Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000064.1

Orthogroup ID

OG0005808

Physical Location & Seq

Genomic Coordinates Reverse (-)

176771 .. 181382

Gene Structure 4612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000064.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

atgatccttggcaaaaatctcaccttcgatggtggtttggtggccggaaacggccggaattgcttgaaatcgacgaaacctccattcggctacagtaaacttcgcaactcacttccgagctcctccgaccaagccaccgcaaaacaccaccccaggcgtgacaaggaagagggggcgagcctgccggtgcgcagattccgtcacggaacttggaccgcttcaggggaaaagcaaaaaaaagtcaaaagcacagaaagcatggaagcgacgatgactatggcaagcctcaaacccaaaccgatgcgacccaaaagtccttaccttccccatccattgaactcaagaagaatcttcaagtccttgtctctccccaatcattcagtgggagccccgacactggtggatcaattcgacccgacaatcccaatagagcgagctgtgactccacccagctcatggtacaccgacccttccttttacgctcaagaactcgactccgttttctaccgtggctggcaagccgtaggatatactgaacagataaagaatcctggggactttttcaccggcagattggggaatgtagagtttgttgtgtgtcgagatgagcatggcaagcttcaagctttccacaatgtttgtcgtcatcatgcctcaattcttgcctacggaagtggccgaaagtcgtgttttgtttgcccttatcatgcatggacatatgggttagatggcgcgcttctcaaggcaactaggataacaggaatacagaacttcaataaacatgagtttgggcttacaccagtaaaagtagctacttggggaccgtttgttcttgcaaatatggagccagaggttgacagtgatgtagaaatcgtggagagcgaatggcttgggagctcttcagatgtactgagtacaaatggggttgatacatcattaagttatgtttgtagacgtgattatacgattgaatgtaactggaaggtcttttgtgacaactacttagatgggggatatcatgtgccttatgcacataaaggcctagcatctggtcttaaccttgatggttactctaccacagtatacgaaaaggtcagcattcagaagtgtgagggtggttcaacagagaggaaaaatgactatgatcggcttggatcaaaagccctttatgcattcatttatcccaatttcatgattaataggtatggaccatggatggacaccaatctagtaatccctcttggacctaggaaatgtcaggtgatatttgattacttccttgaagcttcggtcaaggatgacagagattacatagagaggagtttgaaagagagtgaaaaagtacagatggaagatgtcatgctgtgtgaaggtgttcaaagaggtcttgaatcacccgcatacaatattggtagatacgctccaacggttgaaaatgcaatgcaccattttcactgtctgctacatgagagcataagaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 map00260

Pfam Domains

Protein Families

Rieske Ring_hydroxyl_A

Protein Analysis

494

Amino Acids

55.68

Weight (kDa)

8.31

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29890
fragaria_vesca	FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930
malus_domestica	MD13G1241100.v1.1
prunus_persica	Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1
pyrus_communis	pycom13g21200
rosa_chinensis	RchiOBHm_Chr4g0398871
rosa_laevigata	RLG00000009310 RLG00000009315
rosa_multiflora	Rmu_ssc0000064.1_g000028
rosa_roxburghii	Rroxscaffold_5G00343910 Rroxscaffold_7G00183470
rosa_rugosa	Rorug04G0012400 Rorug04G0012800 Rorug04G0012900 Rorug04G0013000 Rorug04G0013100
rosa_samantha	Rh4AG090500 Rh4BG087800 Rh4CG098800 Rh4DG082800
rosa_wichuraiana	Rw4G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	312
Acc16I	TGCGCA	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccI	GTMKAC	2 cut(s)	952, 1083
AccII	CGCG	1 cut(s)	734
AciI	CCGC	3 cut(s)	138, 216, 1398
AclWI	GGATC	2 cut(s)	411, 1162
AcoI	YGGCCR	3 cut(s)	42, 52, 676
AcuI	CTGAAG	2 cut(s)	204, 885
AfaI	GTAC	4 cut(s)	461, 909, 916, 1344
AfiI	CCNNNNNNNGG	4 cut(s)	86, 222, 397, 456
AjiI	CACGTC	1 cut(s)	956
AjnI	CCWGG	2 cut(s)	152, 550
AloI	GAACNNNNNNTCC	2 cut(s)	813, 845
AluBI	AGCT	8 cut(s)	120, 437, 453, 619, 626, 812, 897, 1286
AluI	AGCT	8 cut(s)	120, 437, 453, 619, 626, 812, 897, 1286
Alw21I	GWGCWC	2 cut(s)	122, 899
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	411, 1162
AoxI	GGCC	4 cut(s)	42, 52, 676, 1039
AseI	ATTAAT	1 cut(s)	1197
Asp700I	GAANNNNTTC	1 cut(s)	1374
AspA2I	CCTAGG	1 cut(s)	1247
AspLEI	GCGC	3 cut(s)	192, 734, 736
AspS9I	GGNCC	4 cut(s)	213, 821, 1208, 1244
AsuHPI	GGTGA	4 cut(s)	13, 556, 1273, 1386
AvaII	GGWCC	4 cut(s)	213, 821, 1208, 1244
AvrII	CCTAGG	1 cut(s)	1247
BanII	GRGCYC	3 cut(s)	122, 391, 899
Bbv12I	GWGCWC	2 cut(s)	122, 899
BccI	CCATC	7 cut(s)	23, 336, 722, 1001, 1058, 1210, 1342
BceAI	ACGGC	2 cut(s)	67, 506
BciT130I	CCWGG	2 cut(s)	154, 552
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	4 cut(s)	750, 1043, 1229, 1248
BfmI	CTRYAG	1 cut(s)	91
BlnI	CCTAGG	1 cut(s)	1247
Bme1390I	CCNGG	2 cut(s)	154, 552
Bme18I	GGWCC	4 cut(s)	213, 821, 1208, 1244
BmgBI	CACGTC	1 cut(s)	956
BmgT120I	GGNCC	4 cut(s)	213, 821, 1208, 1244
BmiI	GGNNCC	3 cut(s)	388, 822, 846
BmrFI	CCNGG	2 cut(s)	154, 552
BmsI	GCATC	2 cut(s)	291, 1055
BpuEI	CTTGAG	3 cut(s)	325, 468, 725
BsaJI	CCNNGG	6 cut(s)	7, 152, 508, 551, 1211, 1247
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 222, 397, 456
Bse118I	RCCGGY	2 cut(s)	184, 566
Bse1I	ACTGG	3 cut(s)	402, 800, 983
Bse3DI	GCAATG	1 cut(s)	1446
BseBI	CCWGG	2 cut(s)	154, 552
BseDI	CCNNGG	6 cut(s)	7, 152, 508, 551, 1211, 1247
BseGI	GGATG	3 cut(s)	328, 1221, 1303
BseLI	CCNNNNNNNGG	4 cut(s)	86, 222, 397, 456
BseMI	GCAATG	1 cut(s)	1446
BseMII	CTCAG	1 cut(s)	902
BseNI	ACTGG	3 cut(s)	402, 800, 983
BsePI	GCGCGC	1 cut(s)	732
BseRI	GAGGAG	2 cut(s)	112, 1333
BseX3I	CGGCCG	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	734
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	4 cut(s)	44, 54, 678, 1041
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	122, 899
BsiSI	CCGG	4 cut(s)	45, 55, 185, 567
BslFI	GGGAC	2 cut(s)	569, 834
BslI	CCNNNNNNNGG	4 cut(s)	86, 222, 397, 456
BsmAI	GTCTC	1 cut(s)	369
BsmFI	GGGAC	2 cut(s)	569, 834
BsmI	GAATGC	2 cut(s)	1098, 1172
BsnI	GGCC	4 cut(s)	44, 54, 678, 1041
Bsp1286I	GDGCHC	3 cut(s)	122, 391, 899
Bsp143I	GATC	4 cut(s)	3, 403, 1144, 1154
Bsp19I	CCATGG	1 cut(s)	1211
BspACI	CCGC	3 cut(s)	138, 216, 1398
BspANI	GGCC	4 cut(s)	44, 54, 678, 1041
BspCNI	CTCAG	1 cut(s)	903
BspFNI	CGCG	1 cut(s)	734
BspHI	TCATGA	1 cut(s)	1191
BspLI	GGNNCC	3 cut(s)	388, 822, 846
BspPI	GGATC	2 cut(s)	411, 1162
BspQI	GCTCTTC	1 cut(s)	904
BsrDI	GCAATG	1 cut(s)	1446
BsrFI	RCCGGY	2 cut(s)	184, 566
BsrI	ACTGG	3 cut(s)	402, 800, 983
BssAI	RCCGGY	2 cut(s)	184, 566
BssECI	CCNNGG	6 cut(s)	7, 152, 508, 551, 1211, 1247
BssHII	GCGCGC	1 cut(s)	732
BssMI	GATC	4 cut(s)	3, 403, 1144, 1154
BssNAI	GTATAC	1 cut(s)	1084
BssT1I	CCWWGG	3 cut(s)	7, 1211, 1247
Bst1107I	GTATAC	1 cut(s)	1084
Bst2UI	CCWGG	2 cut(s)	154, 552
Bst4CI	ACNGT	7 cut(s)	95, 509, 825, 860, 1081, 1429, 1457
Bst6I	CTCTTC	2 cut(s)	162, 904
BstC8I	GCNNGC	8 cut(s)	178, 182, 283, 435, 515, 519, 617, 734
BstDEI	CTNAG	2 cut(s)	911, 1003
BstDSI	CCRYGG	2 cut(s)	508, 1211
BstF5I	GGATG	3 cut(s)	328, 1221, 1303
BstFNI	CGCG	1 cut(s)	734
BstHHI	GCGC	3 cut(s)	192, 734, 736
BstKTI	GATC	4 cut(s)	6, 406, 1147, 1157
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	4 cut(s)	3, 403, 1144, 1154
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 255, 616, 1169
BstNI	CCWGG	2 cut(s)	154, 552
BstSCI	CCNGG	2 cut(s)	152, 550
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	734
BstZ17I	GTATAC	1 cut(s)	1084
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	4 cut(s)	44, 54, 678, 1041
BtgI	CCRYGG	2 cut(s)	508, 1211
BtrI	CACGTC	1 cut(s)	956
BtsCI	GGATG	3 cut(s)	328, 1221, 1303
BtsIMutI	CAGTG	4 cut(s)	387, 395, 865, 1453
Cac8I	GCNNGC	8 cut(s)	178, 182, 283, 435, 515, 519, 617, 734
CciI	TCATGA	1 cut(s)	1191
CfoI	GCGC	3 cut(s)	192, 734, 736
Cfr10I	RCCGGY	2 cut(s)	184, 566
Cfr13I	GGNCC	4 cut(s)	213, 821, 1208, 1244
Csp6I	GTAC	4 cut(s)	460, 908, 915, 1343
CspCI	CAANNNNNGTGG	2 cut(s)	620, 655
CviQI	GTAC	4 cut(s)	460, 908, 915, 1343
DdeI	CTNAG	2 cut(s)	911, 1003
DpnI	GATC	4 cut(s)	5, 405, 1146, 1156
DpnII	GATC	4 cut(s)	3, 403, 1144, 1154
DrdI	GACNNNNNNGTC	1 cut(s)	312
DseDI	GACNNNNNNGTC	1 cut(s)	312
EaeI	YGGCCR	3 cut(s)	42, 52, 676
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	162, 904
EarI	CTCTTC	2 cut(s)	162, 904
Ecl136II	GAGCTC	2 cut(s)	120, 897
EclXI	CGGCCG	1 cut(s)	52
Eco130I	CCWWGG	3 cut(s)	7, 1211, 1247
Eco147I	AGGCCT	1 cut(s)	1041
Eco24I	GRGCYC	3 cut(s)	122, 391, 899
Eco32I	GATATC	1 cut(s)	1016
Eco47I	GGWCC	4 cut(s)	213, 821, 1208, 1244
Eco52I	CGGCCG	1 cut(s)	52
Eco53kI	GAGCTC	2 cut(s)	120, 897
Eco57I	CTGAAG	2 cut(s)	204, 885
EcoICRI	GAGCTC	2 cut(s)	120, 897
EcoRII	CCWGG	2 cut(s)	152, 550
EcoRV	GATATC	1 cut(s)	1016
EcoT14I	CCWWGG	3 cut(s)	7, 1211, 1247
EcoT22I	ATGCAT	2 cut(s)	712, 1174
EcoT38I	GRGCYC	3 cut(s)	122, 391, 899
ErhI	CCWWGG	3 cut(s)	7, 1211, 1247
FaqI	GGGAC	2 cut(s)	569, 834
FauI	CCCGC	1 cut(s)	1405
FauNDI	CATATG	1 cut(s)	718
FblI	GTMKAC	2 cut(s)	952, 1083
FokI	GGATG	3 cut(s)	315, 1228, 1310
FriOI	GRGCYC	3 cut(s)	122, 391, 899
FspBI	CTAG	4 cut(s)	750, 1043, 1229, 1248
FspI	TGCGCA	1 cut(s)	191
GlaI	GCGC	3 cut(s)	191, 733, 735
GsaI	CCCAGC	1 cut(s)	453
HaeIII	GGCC	4 cut(s)	44, 54, 678, 1041
HapII	CCGG	4 cut(s)	45, 55, 185, 567
HhaI	GCGC	3 cut(s)	192, 734, 736
Hin6I	GCGC	3 cut(s)	190, 732, 734
HinP1I	GCGC	3 cut(s)	190, 732, 734
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	3 cut(s)	617, 624, 1284
HinfI	GANTC	6 cut(s)	195, 348, 442, 494, 547, 1391
HpaII	CCGG	4 cut(s)	45, 55, 185, 567
HphI	GGTGA	4 cut(s)	13, 556, 1273, 1386
Hpy166II	GTNNAC	5 cut(s)	98, 462, 856, 953, 1084
Hpy188I	TCNGA	4 cut(s)	117, 127, 904, 1104
Hpy188III	TCNNGA	5 cut(s)	342, 485, 602, 1192, 1388
Hpy8I	GTNNAC	5 cut(s)	98, 462, 856, 953, 1084
Hpy99I	CGWCG	2 cut(s)	76, 271
HpyAV	CCTTC	5 cut(s)	34, 332, 480, 976, 1364
HpyCH4III	ACNGT	7 cut(s)	95, 509, 825, 860, 1081, 1429, 1457
HpyCH4IV	ACGT	1 cut(s)	955
HpyCH4V	TGCA	6 cut(s)	710, 836, 1031, 1172, 1439, 1444
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 255, 616, 1169
HpyF3I	CTNAG	2 cut(s)	911, 1003
HpySE526I	ACGT	1 cut(s)	955
HspAI	GCGC	3 cut(s)	190, 732, 734
Kzo9I	GATC	4 cut(s)	3, 403, 1144, 1154
LguI	GCTCTTC	1 cut(s)	904
LmnI	GCTCC	5 cut(s)	125, 386, 844, 894, 1426
LweI	GCATC	2 cut(s)	291, 1055
MaeI	CTAG	4 cut(s)	750, 1043, 1229, 1248
MaeII	ACGT	1 cut(s)	955
MaeIII	GTNAC	6 cut(s)	158, 200, 439, 974, 992, 1067
MalI	GATC	4 cut(s)	5, 405, 1146, 1156
MboI	GATC	4 cut(s)	3, 403, 1144, 1154
MboII	GAAGA	5 cut(s)	179, 343, 357, 891, 1364
MhlI	GDGCHC	3 cut(s)	122, 391, 899
MluCI	AATT	4 cut(s)	58, 407, 657, 1186
MlyI	GAGTC	2 cut(s)	436, 488
MmeI	TCCRAC	2 cut(s)	150, 1448
Mph1103I	ATGCAT	2 cut(s)	712, 1174
MroXI	GAANNNNTTC	1 cut(s)	1374
MseI	TTAA	3 cut(s)	938, 1056, 1197
MspI	CCGG	4 cut(s)	45, 55, 185, 567
MspR9I	CCNGG	2 cut(s)	154, 552
Mva1269I	GAATGC	2 cut(s)	1098, 1172
MvaI	CCWGG	2 cut(s)	154, 552
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	4 cut(s)	60, 255, 616, 1169
NcoI	CCATGG	1 cut(s)	1211
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	4 cut(s)	3, 403, 1144, 1154
NlaIV	GGNNCC	3 cut(s)	388, 822, 846
NmuCI	GTSAC	4 cut(s)	158, 200, 439, 992
NsbI	TGCGCA	1 cut(s)	191
NsiI	ATGCAT	2 cut(s)	712, 1174
PagI	TCATGA	1 cut(s)	1191
PauI	GCGCGC	1 cut(s)	732
PceI	AGGCCT	1 cut(s)	1041
PciSI	GCTCTTC	1 cut(s)	904
PcsI	WCGNNNNNNNCGW	1 cut(s)	879
PctI	GAATGC	2 cut(s)	1098, 1172
PdmI	GAANNNNTTC	1 cut(s)	1374
PfeI	GAWTC	4 cut(s)	195, 348, 547, 1391
PflMI	CCANNNNNTGG	1 cut(s)	456
PleI	GAGTC	2 cut(s)	436, 488
PpsI	GAGTC	2 cut(s)	436, 488
PshBI	ATTAAT	1 cut(s)	1197
Psp124BI	GAGCTC	2 cut(s)	122, 899
Psp6I	CCWGG	2 cut(s)	152, 550
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	2 cut(s)	152, 550
PspN4I	GGNNCC	3 cut(s)	388, 822, 846
PspPI	GGNCC	4 cut(s)	213, 821, 1208, 1244
PteI	GCGCGC	1 cut(s)	732
RsaI	GTAC	4 cut(s)	461, 909, 916, 1344
RsaNI	GTAC	4 cut(s)	460, 908, 915, 1343
SacI	GAGCTC	2 cut(s)	122, 899
SapI	GCTCTTC	1 cut(s)	904
SaqAI	TTAA	3 cut(s)	938, 1056, 1197
Sau3AI	GATC	4 cut(s)	3, 403, 1144, 1154
Sau96I	GGNCC	4 cut(s)	213, 821, 1208, 1244
SchI	GAGTC	2 cut(s)	436, 488
ScrFI	CCNGG	2 cut(s)	154, 552
SduI	GDGCHC	3 cut(s)	122, 391, 899
SfaNI	GCATC	2 cut(s)	291, 1055
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	4 cut(s)	213, 821, 1208, 1244
SmlI	CTYRAG	3 cut(s)	340, 483, 740
SmoI	CTYRAG	3 cut(s)	340, 483, 740
Sse9I	AATT	4 cut(s)	58, 407, 657, 1186
SseBI	AGGCCT	1 cut(s)	1041
SsiI	CCGC	3 cut(s)	138, 216, 1398
SspI	AATATT	1 cut(s)	1408
SspMI	CTAG	4 cut(s)	750, 1043, 1229, 1248
SstI	GAGCTC	2 cut(s)	122, 899
StuI	AGGCCT	1 cut(s)	1041
StyD4I	CCNGG	2 cut(s)	152, 550
StyI	CCWWGG	3 cut(s)	7, 1211, 1247
TaaI	ACNGT	7 cut(s)	95, 509, 825, 860, 1081, 1429, 1457
TaiI	ACGT	1 cut(s)	958
TaqI	TCGA	5 cut(s)	27, 71, 411, 492, 601
TaqII	GACCGA	1 cut(s)	1279
TasI	AATT	4 cut(s)	58, 407, 657, 1186
TatI	WGTACW	3 cut(s)	907, 914, 1342
TfiI	GAWTC	4 cut(s)	195, 348, 547, 1391
Tru1I	TTAA	3 cut(s)	938, 1056, 1197
Tru9I	TTAA	3 cut(s)	938, 1056, 1197
TscAI	CASTG	4 cut(s)	387, 402, 865, 1460
TseFI	GTSAC	4 cut(s)	158, 200, 439, 992
Tsp45I	GTSAC	4 cut(s)	158, 200, 439, 992
TspDTI	ATGAA	2 cut(s)	1165, 1180
TspGWI	ACGGA	4 cut(s)	188, 219, 487, 684
TspRI	CASTG	4 cut(s)	387, 402, 865, 1460
Van91I	CCANNNNNTGG	1 cut(s)	456
VpaK11BI	GGWCC	4 cut(s)	213, 821, 1208, 1244
VspI	ATTAAT	1 cut(s)	1197
XcmI	CCANNNNNNNNNTGG	2 cut(s)	379, 453
XmaJI	CCTAGG	1 cut(s)	1247
XmiI	GTMKAC	2 cut(s)	952, 1083
XmnI	GAANNNNTTC	1 cut(s)	1374
XspI	CTAG	4 cut(s)	750, 1043, 1229, 1248
Zsp2I	ATGCAT	2 cut(s)	712, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.