Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005808

Physical Location & Seq

Genomic Coordinates Reverse (-)

50858016 .. 50860232

Gene Structure 2217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGACTATGACTATGACTATGGCAACTCTCAAACCCAAACCGATGCGACCCAAAAGCCCTTATCTTCCCCATTCATTGAACTCAAGAAGAATCTTCAATTCCTTGTCTCTCCCCAATCCTTCAGTGGGAGCCCCGACACTGGTGGATCAATTCGACCCGACAATCCCAATAGAGCAAGCCATAAAGAATCCTGGGGACTTTTTCACTGGCAGATTGGGGAATGTAGAGTCTGTTGTGTGTCGAGATGAGCATGGCAAGCTTCAAGCTTTCCACAATGTCTGTCGTCATCATGCCTCAATTCTTGCCTATGGAAGTGGCCGAAAGTCGTGTTTCGTGTGCCCTTATCATGTTAGAACTGGTTTTGTAAATTATTTCTTTGACATGATTACACAAACATATGGGTTAGACGGCGTGCTTCCCATGGCAACTAGGATAACAGGAATACAGAACTTCAATAAACATCTACTTGGGGACTTTGTTCTTGCAAATATGGAGCCAGAGGTTGACTGTGATGTAGAAATCGTGGAGAGCGAATGGCTTGGGAGCTCTTCAGATGTACTGAGTACAAATGGGGTTGATACATCATTAAGTTATGTTTGTAGACGTGAATATACGATTGAATGTAACTGGAAGGTCTTTTGTGACAACTACTTAGATGGGGGATATCATGTGCCTTATGCACATAAAGGCCTAGCATCTGGTCTTAACCTTGATGGTAAACAAGTGACTGAAGTTGTTAAAGAGAGTTCTGATATCATAGTCTTGGATGGCAATTTCGCTACTGTAGCCAAGATTTCCATTGAATTTGGAGTTCGAAAGACTGGTATCGTGGACCATCCTTTGAAATGGATTACTGCTAACTCCGTGTTTCTGGGAATAGTGGGAATAATTCTTGTGATTCAGCTTATCATCATTGAGTTTCTCGGGAAGGCGTTTTTCATGGTAAGGCTTGACTGGAAAGAGTGGCAGTTTTCCCTCACTCTTGGTATTGTCAAAAGATTTTTCTTTCTTTCAAGGTTTCTTTTTATTGTCACCCCGCCCCTCCCTGATGCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 map00260

Pfam Domains

Protein Families

Rieske Ring_hydroxyl_A

Protein Analysis

353

Amino Acids

39.42

Weight (kDa)

6.55

Isoelectric Point (pI)

27.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	62 - 117	2e-10	Rieske [2Fe-2S] domain
Ring_hydroxyl_A	PF00848	196 - 238	3.1e-09	Ring hydroxylating alpha subunit (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29890
fragaria_vesca	FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930
malus_domestica	MD13G1241100.v1.1
prunus_persica	Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1
pyrus_communis	pycom13g21200
rosa_chinensis	RchiOBHm_Chr4g0398871
rosa_laevigata	RLG00000009310 RLG00000009315
rosa_multiflora	Rmu_ssc0000064.1_g000028
rosa_roxburghii	Rroxscaffold_5G00343910 Rroxscaffold_7G00183470
rosa_rugosa	Rorug04G0012400 Rorug04G0012800 Rorug04G0012900 Rorug04G0013000 Rorug04G0013100
rosa_samantha	Rh4AG090500 Rh4BG087800 Rh4CG098800 Rh4DG082800
rosa_wichuraiana	Rw4G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	601
AciI	CCGC	1 cut(s)	1037
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	3 cut(s)	105, 534, 750
AfaI	GTAC	2 cut(s)	558, 565
AfiI	CCNNNNNNNGG	2 cut(s)	125, 139
AgsI	TTSAA	8 cut(s)	79, 97, 263, 454, 620, 803, 844, 1014
AjiI	CACGTC	1 cut(s)	605
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	4 cut(s)	259, 266, 546, 904
AluI	AGCT	4 cut(s)	259, 266, 546, 904
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	923
AoxI	GGCC	2 cut(s)	316, 688
ApoI	RAATTY	1 cut(s)	803
AspS9I	GGNCC	1 cut(s)	832
AsuHPI	GGTGA	1 cut(s)	1024
AsuII	TTCGAA	1 cut(s)	814
AvaI	CYCGRG	1 cut(s)	923
AvaII	GGWCC	1 cut(s)	832
BaeGI	GKGCMC	1 cut(s)	341
BanII	GRGCYC	2 cut(s)	133, 548
Bbv12I	GWGCWC	1 cut(s)	548
BccI	CCATC	4 cut(s)	650, 707, 761, 843
BceAI	ACGGC	1 cut(s)	424
BciT130I	CCWGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	429, 692
BfmI	CTRYAG	1 cut(s)	783
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	832
BmeT110I	CYCGRG	1 cut(s)	923
BmgBI	CACGTC	1 cut(s)	605
BmgT120I	GGNCC	1 cut(s)	832
BmiI	GGNNCC	2 cut(s)	130, 495
BmrFI	CCNGG	1 cut(s)	192
BmsI	GCATC	3 cut(s)	33, 704, 1039
Bpu14I	TTCGAA	1 cut(s)	814
BpuEI	CTTGAG	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	191, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 139
Bse1I	ACTGG	7 cut(s)	144, 211, 361, 632, 826, 959, 1053
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	191, 420
BseGI	GGATG	2 cut(s)	772, 835
BseLI	CCNNNNNNNGG	2 cut(s)	125, 139
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	7 cut(s)	144, 211, 361, 632, 826, 959, 1053
BseSI	GKGCMC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	318, 690
BsiHKAI	GWGCWC	1 cut(s)	548
BsiHKCI	CYCGRG	1 cut(s)	923
BslFI	GGGAC	2 cut(s)	209, 485
BslI	CCNNNNNNNGG	2 cut(s)	125, 139
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	209, 485
BsnI	GGCC	2 cut(s)	318, 690
BsoBI	CYCGRG	1 cut(s)	923
Bsp119I	TTCGAA	1 cut(s)	814
Bsp1286I	GDGCHC	3 cut(s)	133, 341, 548
Bsp143I	GATC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	1 cut(s)	1037
BspANI	GGCC	2 cut(s)	318, 690
BspCNI	CTCAG	1 cut(s)	552
BspLI	GGNNCC	2 cut(s)	130, 495
BspPI	GGATC	1 cut(s)	153
BspQI	GCTCTTC	1 cut(s)	553
BspT104I	TTCGAA	1 cut(s)	814
BsrI	ACTGG	7 cut(s)	144, 211, 361, 632, 826, 959, 1053
BssECI	CCNNGG	2 cut(s)	191, 420
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	509, 784
Bst6I	CTCTTC	1 cut(s)	553
BstBI	TTCGAA	1 cut(s)	814
BstC8I	GCNNGC	3 cut(s)	177, 257, 413
BstDEI	CTNAG	2 cut(s)	560, 652
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	772, 835
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 785
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	318, 690
BtgI	CCRYGG	1 cut(s)	420
BtrI	CACGTC	1 cut(s)	605
BtsCI	GGATG	2 cut(s)	772, 835
BtsIMutI	CAGTG	3 cut(s)	129, 137, 204
Cac8I	GCNNGC	3 cut(s)	177, 257, 413
Cfr13I	GGNCC	1 cut(s)	832
Csp6I	GTAC	2 cut(s)	557, 564
CviAII	CATG	7 cut(s)	251, 290, 347, 382, 421, 668, 940
CviQI	GTAC	2 cut(s)	557, 564
DdeI	CTNAG	2 cut(s)	560, 652
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	553
Ecl136II	GAGCTC	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	690
Eco24I	GRGCYC	2 cut(s)	133, 548
Eco32I	GATATC	2 cut(s)	665, 754
Eco47I	GGWCC	1 cut(s)	832
Eco53kI	GAGCTC	1 cut(s)	546
Eco57I	CTGAAG	3 cut(s)	105, 534, 750
Eco88I	CYCGRG	1 cut(s)	923
EcoICRI	GAGCTC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	190
EcoRV	GATATC	2 cut(s)	665, 754
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	2 cut(s)	133, 548
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	7 cut(s)	254, 293, 350, 385, 424, 671, 943
FaqI	GGGAC	2 cut(s)	209, 485
FatI	CATG	7 cut(s)	250, 289, 346, 381, 420, 667, 939
FauI	CCCGC	1 cut(s)	1044
FauNDI	CATATG	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	601
FokI	GGATG	2 cut(s)	779, 822
FriOI	GRGCYC	2 cut(s)	133, 548
FspBI	CTAG	2 cut(s)	429, 692
HaeIII	GGCC	2 cut(s)	318, 690
Hin1II	CATG	7 cut(s)	254, 293, 350, 385, 424, 671, 943
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	2 cut(s)	257, 264
HinfI	GANTC	4 cut(s)	90, 187, 227, 898
HphI	GGTGA	1 cut(s)	1024
Hpy166II	GTNNAC	4 cut(s)	505, 602, 719, 832
Hpy188I	TCNGA	2 cut(s)	553, 751
Hpy188III	TCNNGA	3 cut(s)	84, 242, 925
Hpy8I	GTNNAC	4 cut(s)	505, 602, 719, 832
HpyAV	CCTTC	3 cut(s)	129, 625, 922
HpyCH4III	ACNGT	2 cut(s)	509, 784
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	2 cut(s)	485, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 785
HpyF3I	CTNAG	2 cut(s)	560, 652
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	7 cut(s)	254, 293, 350, 385, 424, 671, 943
Kzo9I	GATC	1 cut(s)	145
LguI	GCTCTTC	1 cut(s)	553
LmnI	GCTCC	3 cut(s)	128, 493, 543
LweI	GCATC	3 cut(s)	33, 704, 1039
MaeI	CTAG	2 cut(s)	429, 692
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	4 cut(s)	623, 641, 724, 1030
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	4 cut(s)	56, 85, 99, 540
MhlI	GDGCHC	3 cut(s)	133, 341, 548
MluCI	AATT	7 cut(s)	97, 149, 297, 367, 772, 803, 888
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	4 cut(s)	304, 493, 986, 1052
MseI	TTAA	4 cut(s)	587, 705, 738, 1057
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	256, 785
NcoI	CCATGG	1 cut(s)	420
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	7 cut(s)	254, 293, 350, 385, 424, 671, 943
NlaIV	GGNNCC	2 cut(s)	130, 495
NmuCI	GTSAC	3 cut(s)	641, 724, 1030
NspV	TTCGAA	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	690
PciSI	GCTCTTC	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	90, 187, 898
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	130, 495
PspPI	GGNCC	1 cut(s)	832
RsaI	GTAC	2 cut(s)	558, 565
RsaNI	GTAC	2 cut(s)	557, 564
SacI	GAGCTC	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	553
SaqAI	TTAA	4 cut(s)	587, 705, 738, 1057
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	832
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	3 cut(s)	133, 341, 548
SetI	ASST	9 cut(s)	261, 268, 504, 548, 607, 636, 711, 906, 1019
SfaNI	GCATC	3 cut(s)	33, 704, 1039
SfcI	CTRYAG	1 cut(s)	783
SfuI	TTCGAA	1 cut(s)	814
SinI	GGWCC	1 cut(s)	832
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	7 cut(s)	97, 149, 297, 367, 772, 803, 888
SseBI	AGGCCT	1 cut(s)	690
SsiI	CCGC	1 cut(s)	1037
SspMI	CTAG	2 cut(s)	429, 692
SstI	GAGCTC	1 cut(s)	548
StuI	AGGCCT	1 cut(s)	690
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	509, 784
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	3 cut(s)	153, 241, 814
TasI	AATT	7 cut(s)	97, 149, 297, 367, 772, 803, 888
TatI	WGTACW	2 cut(s)	556, 563
TfiI	GAWTC	3 cut(s)	90, 187, 898
Tru1I	TTAA	4 cut(s)	587, 705, 738, 1057
Tru9I	TTAA	4 cut(s)	587, 705, 738, 1057
TscAI	CASTG	3 cut(s)	129, 144, 211
TseFI	GTSAC	3 cut(s)	641, 724, 1030
Tsp45I	GTSAC	3 cut(s)	641, 724, 1030
TspDTI	ATGAA	2 cut(s)	63, 928
TspGWI	ACGGA	1 cut(s)	853
TspRI	CASTG	3 cut(s)	129, 144, 211
VpaK11BI	GGWCC	1 cut(s)	832
XapI	RAATTY	1 cut(s)	803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	2 cut(s)	429, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.