Rroxscaffold_7G00183470

Choline monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005808
Physical Location & Seq
Reverse (-)
22540029 .. 22540658
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183470.1

Sequence Viewer

Length: 291 bp
ATGGAAGTTGTCCACATTCACTCACCAAAAGCATGGAAATGGATCAGATTCAGTTCAATCCTGGAGGAGTTTGGGCTTACACCAGTAAAAGCAGCTACTTGGGGACCGTTTGTTCTTGCAAACATGGAGCCAGAGGTTGACAGTGATGTAGAAATCATGGAGAGCGAATGGCTTGGGAGCTCTTCAGTTGTACTGAGTACAAATGGGGTTGACACATCATTAAGTTATGTTTGTAGACGTGATTATATGATTGAGTGTAACTGGAAAGTCTTTTTTTTGACAACTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 map00260
Pfam Domains
Protein Families
Rieske Ring_hydroxyl_A

Protein Analysis

96

Amino Acids

10.98

Weight (kDa)

4.69

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AclWI GGATC 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 2 cut(s) 192, 199
AgsI TTSAA 1 cut(s) 57
AjiI CACGTC 1 cut(s) 239
AjnI CCWGG 1 cut(s) 60
AloI GAACNNNNNNTCC 2 cut(s) 96, 128
AluBI AGCT 2 cut(s) 95, 180
AluI AGCT 2 cut(s) 95, 180
Alw21I GWGCWC 1 cut(s) 182
AlwI GGATC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 15
AvaII GGWCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 62
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 2 cut(s) 105, 129
BmrFI CCNGG 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 83, 266
BseBI CCWGG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 83, 266
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 182
BslFI GGGAC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 105, 129
BspPI GGATC 1 cut(s) 50
BspQI GCTCTTC 1 cut(s) 187
BsrI ACTGG 2 cut(s) 83, 266
BssMI GATC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 108, 143
Bst6I CTCTTC 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 194, 288
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 104
Csp6I GTAC 2 cut(s) 191, 198
CviAII CATG 3 cut(s) 33, 124, 157
CviJI RGCY 5 cut(s) 76, 95, 130, 172, 180
CviKI_1 RGCY 5 cut(s) 76, 95, 130, 172, 180
CviQI GTAC 2 cut(s) 191, 198
DdeI CTNAG 2 cut(s) 194, 288
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Ecl136II GAGCTC 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 182
FaeI CATG 3 cut(s) 36, 127, 160
FaiI YATR 6 cut(s) 34, 125, 158, 228, 246, 248
FaqI GGGAC 1 cut(s) 117
FatI CATG 3 cut(s) 32, 123, 156
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
GsuI CTGGAG 1 cut(s) 83
Hin1II CATG 3 cut(s) 36, 127, 160
HincII GTYRAC 2 cut(s) 139, 211
HindII GTYRAC 2 cut(s) 139, 211
HinfI GANTC 1 cut(s) 48
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 4 cut(s) 13, 139, 211, 236
Hpy188I TCNGA 1 cut(s) 47
Hpy8I GTNNAC 4 cut(s) 13, 139, 211, 236
HpyCH4III ACNGT 2 cut(s) 108, 143
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 119
HpyF3I CTNAG 2 cut(s) 194, 288
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 3 cut(s) 36, 127, 160
Kzo9I GATC 1 cut(s) 42
LguI GCTCTTC 1 cut(s) 187
LmnI GCTCC 2 cut(s) 127, 177
LpnPI CCDG 5 cut(s) 47, 74, 96, 144, 247
Lsp1109I GCAGC 1 cut(s) 104
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 182
MnlI CCTC 2 cut(s) 58, 127
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
NdeII GATC 1 cut(s) 42
NlaIII CATG 3 cut(s) 36, 127, 160
NlaIV GGNNCC 2 cut(s) 105, 129
PciSI GCTCTTC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 48
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 105, 129
PspPI GGNCC 1 cut(s) 104
RsaI GTAC 2 cut(s) 192, 199
RsaNI GTAC 2 cut(s) 191, 198
RseI CAYNNNNRTG 1 cut(s) 37
SacI GAGCTC 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 182
SetI ASST 4 cut(s) 97, 138, 182, 241
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 37
SstI GAGCTC 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 108, 143
TaiI ACGT 1 cut(s) 241
TatI WGTACW 2 cut(s) 190, 197
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 92
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.