Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005808

Physical Location & Seq

Genomic Coordinates Reverse (-)

50773017 .. 50775340

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009310

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGACTATGACTATGGCAAGTCTCAAACCCAAACCGATGCGACCCAGAAGCCCTTACCTTCCTCATTCGTTGAACTCAAGAAGAGTCTTCAAGTCTTTGTCTCTTCCCAATCATTCAGTGGGAGCCCCTACACTGGTGGATCAATTCGACCCGACAATCCCAATAGAGCGAGCCGTGACTCCACCCAGCTCATGGTACACCGACCCTTCCTTCTACGCTCAAGAACTCGACTCCGTTTTCTACCGTGGATGGCAAGCCGTAGGATATACTGAACAGATAAAGAATCCTGGGGATTTTTTCACCGGCAGATTGGGGAATGTAGAGTTTGTTGTGTGTCGAGATGAGCATGGCAAGCTTCAAGCTTTCCACAATGTTTGTCGTCATCATGCCTCAATTCTTGCCTACGGAAGTGGCCGAAAGTCGTGTTTCGTGTGCCCTTATCATGGGTGGACATATGGGTTAGATGGCGCACTTCTCAAGGCAACTAGAATAACAGGAATACAGAACTTCAATAAACATGAGTTTGGGCTTACACCAGTAAAAGTAGCTACCTGGGGACCATTTGTTCTTGCAAATATGGAGCCAGAGGTTGACAGTGATGTAGAAACCGTGGCGAGCGAATGGCTTGGGAGCTCTTCAGATGTACTGAGTACAAATGGGGTTGATACATCACTAAGTTATGTTTGTAGACGTGAATATATGATTGAATGTAACTGGAAGGTCTTTTGTGACAACTACTTAGATGGGGGATATCATGTGCCTTATGCACATATAGGCCTAGCTTCTGGTCTTAACCTTGATGGTTACTCTACCACAGTATACGAAAAGGTCAGCATTCAAAAGTGTGAAGGTGGTTCAACAGAGAGGAAAAATGACCATGATCGGCTTGGATCAAAAGCCCTTTATGCTTTCATTTATCCCAATTTCATGATTAATAGGTATGGACCATGGATGGACACCAATCTAGTAATCCCTCTTGGACCTAGGAAATGTCAGGTGATATTTGATTACTTCCTTGAAGCTTCGGTCAAGGATGACAGAGATTACATAGAGAGGAGTTTGAAAGAAAGTGAAAAAGTACAGATGGAAGATGTCATGCTGTGTGAAGGTGTTCAAAGAGGTCTTGAATCACCCGCATACAATATTGGTAGATACGCTCCAACGGTTGAAAATGCAATGCACCATTTTCACTGTCTGCTACATGAGAGCATAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 map00260

Pfam Domains

Protein Families

Rieske Ring_hydroxyl_A

Protein Analysis

407

Amino Acids

45.98

Weight (kDa)

6.31

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	84 - 170	1.2e-18	Rieske [2Fe-2S] domain
Ring_hydroxyl_A	PF00848	225 - 402	1.4e-30	Ring hydroxylating alpha subunit (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29890
fragaria_vesca	FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930
malus_domestica	MD13G1241100.v1.1
prunus_persica	Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1
pyrus_communis	pycom13g21200
rosa_chinensis	RchiOBHm_Chr4g0398871
rosa_laevigata	RLG00000009310 RLG00000009315
rosa_multiflora	Rmu_ssc0000064.1_g000028
rosa_roxburghii	Rroxscaffold_5G00343910 Rroxscaffold_7G00183470
rosa_rugosa	Rorug04G0012400 Rorug04G0012800 Rorug04G0012900 Rorug04G0013000 Rorug04G0013100
rosa_samantha	Rh4AG090500 Rh4BG087800 Rh4CG098800 Rh4DG082800
rosa_wichuraiana	Rw4G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	192
AccI	GTMKAC	2 cut(s)	688, 819
AciI	CCGC	1 cut(s)	1134
AclWI	GGATC	2 cut(s)	147, 898
AcoI	YGGCCR	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	4 cut(s)	197, 645, 652, 1080
AfiI	CCNNNNNNNGG	3 cut(s)	133, 192, 443
AjiI	CACGTC	1 cut(s)	692
AjnI	CCWGG	2 cut(s)	286, 551
AloI	GAACNNNNNNTCC	2 cut(s)	549, 581
AluBI	AGCT	7 cut(s)	189, 355, 362, 548, 633, 782, 1022
AluI	AGCT	7 cut(s)	189, 355, 362, 548, 633, 782, 1022
Alw21I	GWGCWC	1 cut(s)	635
Alw26I	GTCTC	2 cut(s)	26, 105
AlwI	GGATC	2 cut(s)	147, 898
AoxI	GGCC	2 cut(s)	412, 775
AseI	ATTAAT	1 cut(s)	933
Asp700I	GAANNNNTTC	1 cut(s)	1110
AspA2I	CCTAGG	1 cut(s)	983
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	3 cut(s)	557, 944, 980
AsuHPI	GGTGA	3 cut(s)	292, 1009, 1122
AvaII	GGWCC	3 cut(s)	557, 944, 980
AvrII	CCTAGG	1 cut(s)	983
BaeGI	GKGCMC	1 cut(s)	437
BanII	GRGCYC	2 cut(s)	127, 635
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	635
BccI	CCATC	6 cut(s)	243, 458, 737, 794, 946, 1078
BceAI	ACGGC	2 cut(s)	158, 242
BciT130I	CCWGG	2 cut(s)	288, 553
BcoDI	GTCTC	2 cut(s)	26, 105
BfaI	CTAG	4 cut(s)	486, 779, 965, 984
BlnI	CCTAGG	1 cut(s)	983
Bme1390I	CCNGG	2 cut(s)	288, 553
Bme18I	GGWCC	3 cut(s)	557, 944, 980
BmgBI	CACGTC	1 cut(s)	692
BmgT120I	GGNCC	3 cut(s)	557, 944, 980
BmiI	GGNNCC	3 cut(s)	124, 558, 582
BmrFI	CCNGG	2 cut(s)	288, 553
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	79
BpuEI	CTTGAG	3 cut(s)	61, 204, 461
BsaJI	CCNNGG	6 cut(s)	244, 287, 552, 609, 947, 983
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 192, 443
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	3 cut(s)	138, 536, 719
Bse3DI	GCAATG	1 cut(s)	1182
BseBI	CCWGG	2 cut(s)	288, 553
BseDI	CCNNGG	6 cut(s)	244, 287, 552, 609, 947, 983
BseGI	GGATG	3 cut(s)	254, 957, 1039
BseLI	CCNNNNNNNGG	3 cut(s)	133, 192, 443
BseMI	GCAATG	1 cut(s)	1182
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	3 cut(s)	138, 536, 719
BseRI	GAGGAG	1 cut(s)	1069
BseSI	GKGCMC	1 cut(s)	437
BseYI	CCCAGC	1 cut(s)	185
BshFI	GGCC	2 cut(s)	414, 777
BsiHKAI	GWGCWC	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	3 cut(s)	133, 192, 443
BsmAI	GTCTC	2 cut(s)	26, 105
BsmFI	GGGAC	1 cut(s)	570
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	2 cut(s)	414, 777
Bsp1286I	GDGCHC	3 cut(s)	127, 437, 635
Bsp143I	GATC	3 cut(s)	139, 880, 890
Bsp19I	CCATGG	1 cut(s)	947
BspACI	CCGC	1 cut(s)	1134
BspANI	GGCC	2 cut(s)	414, 777
BspCNI	CTCAG	1 cut(s)	639
BspHI	TCATGA	1 cut(s)	927
BspLI	GGNNCC	3 cut(s)	124, 558, 582
BspPI	GGATC	2 cut(s)	147, 898
BspQI	GCTCTTC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	1182
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	3 cut(s)	138, 536, 719
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	6 cut(s)	244, 287, 552, 609, 947, 983
BssMI	GATC	3 cut(s)	139, 880, 890
BssNAI	GTATAC	1 cut(s)	820
BssT1I	CCWWGG	2 cut(s)	947, 983
Bst1107I	GTATAC	1 cut(s)	820
Bst2UI	CCWGG	2 cut(s)	288, 553
Bst4CI	ACNGT	6 cut(s)	245, 596, 610, 817, 1165, 1193
Bst6I	CTCTTC	3 cut(s)	76, 108, 640
BstC8I	GCNNGC	4 cut(s)	171, 255, 353, 616
BstDEI	CTNAG	3 cut(s)	647, 674, 739
BstDSI	CCRYGG	3 cut(s)	244, 609, 947
BstF5I	GGATG	3 cut(s)	254, 957, 1039
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	3 cut(s)	142, 883, 893
BstMAI	GTCTC	2 cut(s)	26, 105
BstMBI	GATC	3 cut(s)	139, 880, 890
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 905
BstNI	CCWGG	2 cut(s)	288, 553
BstSCI	CCNGG	2 cut(s)	286, 551
BstSLI	GKGCMC	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	820
BsuRI	GGCC	2 cut(s)	414, 777
BtgI	CCRYGG	3 cut(s)	244, 609, 947
BtrI	CACGTC	1 cut(s)	692
BtsCI	GGATG	3 cut(s)	254, 957, 1039
BtsIMutI	CAGTG	4 cut(s)	123, 131, 601, 1189
Cac8I	GCNNGC	4 cut(s)	171, 255, 353, 616
CciI	TCATGA	1 cut(s)	927
CfoI	GCGC	1 cut(s)	470
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	3 cut(s)	557, 944, 980
Csp6I	GTAC	4 cut(s)	196, 644, 651, 1079
CspCI	CAANNNNNGTGG	2 cut(s)	356, 391
CviQI	GTAC	4 cut(s)	196, 644, 651, 1079
DdeI	CTNAG	3 cut(s)	647, 674, 739
DpnI	GATC	3 cut(s)	141, 882, 892
DpnII	GATC	3 cut(s)	139, 880, 890
EaeI	YGGCCR	1 cut(s)	412
Eam1104I	CTCTTC	3 cut(s)	76, 108, 640
EarI	CTCTTC	3 cut(s)	76, 108, 640
Ecl136II	GAGCTC	1 cut(s)	633
Eco130I	CCWWGG	2 cut(s)	947, 983
Eco147I	AGGCCT	1 cut(s)	777
Eco24I	GRGCYC	2 cut(s)	127, 635
Eco32I	GATATC	1 cut(s)	752
Eco47I	GGWCC	3 cut(s)	557, 944, 980
Eco53kI	GAGCTC	1 cut(s)	633
Eco57I	CTGAAG	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	633
EcoRII	CCWGG	2 cut(s)	286, 551
EcoRV	GATATC	1 cut(s)	752
EcoT14I	CCWWGG	2 cut(s)	947, 983
EcoT38I	GRGCYC	2 cut(s)	127, 635
ErhI	CCWWGG	2 cut(s)	947, 983
FaqI	GGGAC	1 cut(s)	570
FauI	CCCGC	1 cut(s)	1141
FauNDI	CATATG	1 cut(s)	454
FblI	GTMKAC	2 cut(s)	688, 819
FokI	GGATG	3 cut(s)	261, 964, 1046
FriOI	GRGCYC	2 cut(s)	127, 635
FspBI	CTAG	4 cut(s)	486, 779, 965, 984
GlaI	GCGC	1 cut(s)	469
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	414, 777
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	470
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	3 cut(s)	353, 360, 1020
HinfI	GANTC	5 cut(s)	84, 178, 230, 283, 1127
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	3 cut(s)	292, 1009, 1122
Hpy166II	GTNNAC	5 cut(s)	198, 450, 592, 689, 820
Hpy188I	TCNGA	1 cut(s)	640
Hpy188III	TCNNGA	5 cut(s)	78, 221, 338, 928, 1124
Hpy8I	GTNNAC	5 cut(s)	198, 450, 592, 689, 820
HpyAV	CCTTC	6 cut(s)	68, 216, 220, 712, 842, 1100
HpyCH4III	ACNGT	6 cut(s)	245, 596, 610, 817, 1165, 1193
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	4 cut(s)	572, 767, 1175, 1180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 905
HpyF3I	CTNAG	3 cut(s)	647, 674, 739
HpySE526I	ACGT	1 cut(s)	691
HspAI	GCGC	1 cut(s)	468
Kzo9I	GATC	3 cut(s)	139, 880, 890
LguI	GCTCTTC	1 cut(s)	640
LmnI	GCTCC	4 cut(s)	122, 580, 630, 1162
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	4 cut(s)	486, 779, 965, 984
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	4 cut(s)	175, 710, 728, 803
MalI	GATC	3 cut(s)	141, 882, 892
MboI	GATC	3 cut(s)	139, 880, 890
MboII	GAAGA	5 cut(s)	79, 93, 95, 627, 1100
MhlI	GDGCHC	3 cut(s)	127, 437, 635
MluCI	AATT	3 cut(s)	143, 393, 922
MlyI	GAGTC	3 cut(s)	93, 172, 224
MmeI	TCCRAC	1 cut(s)	1184
MnlI	CCTC	7 cut(s)	72, 400, 580, 858, 984, 1047, 1112
MroXI	GAANNNNTTC	1 cut(s)	1110
MseI	TTAA	2 cut(s)	792, 933
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	2 cut(s)	288, 553
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	2 cut(s)	288, 553
MwoI	GCNNNNNNNGC	2 cut(s)	352, 905
NcoI	CCATGG	1 cut(s)	947
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	3 cut(s)	139, 880, 890
NlaIV	GGNNCC	3 cut(s)	124, 558, 582
NmuCI	GTSAC	2 cut(s)	175, 728
PagI	TCATGA	1 cut(s)	927
PceI	AGGCCT	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	640
PctI	GAATGC	1 cut(s)	834
PdmI	GAANNNNTTC	1 cut(s)	1110
PfeI	GAWTC	2 cut(s)	283, 1127
PflMI	CCANNNNNTGG	1 cut(s)	192
PleI	GAGTC	3 cut(s)	92, 172, 224
PpsI	GAGTC	3 cut(s)	92, 172, 224
PshBI	ATTAAT	1 cut(s)	933
Psp124BI	GAGCTC	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	286, 551
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	2 cut(s)	286, 551
PspN4I	GGNNCC	3 cut(s)	124, 558, 582
PspPI	GGNCC	3 cut(s)	557, 944, 980
RsaI	GTAC	4 cut(s)	197, 645, 652, 1080
RsaNI	GTAC	4 cut(s)	196, 644, 651, 1079
SacI	GAGCTC	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	640
SaqAI	TTAA	2 cut(s)	792, 933
Sau3AI	GATC	3 cut(s)	139, 880, 890
Sau96I	GGNCC	3 cut(s)	557, 944, 980
SchI	GAGTC	3 cut(s)	93, 172, 224
ScrFI	CCNGG	2 cut(s)	288, 553
SduI	GDGCHC	3 cut(s)	127, 437, 635
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	3 cut(s)	557, 944, 980
SmlI	CTYRAG	3 cut(s)	76, 219, 476
SmoI	CTYRAG	3 cut(s)	76, 219, 476
Sse9I	AATT	3 cut(s)	143, 393, 922
SseBI	AGGCCT	1 cut(s)	777
SsiI	CCGC	1 cut(s)	1134
SspI	AATATT	1 cut(s)	1144
SspMI	CTAG	4 cut(s)	486, 779, 965, 984
SstI	GAGCTC	1 cut(s)	635
StuI	AGGCCT	1 cut(s)	777
StyD4I	CCNGG	2 cut(s)	286, 551
StyI	CCWWGG	2 cut(s)	947, 983
TaaI	ACNGT	6 cut(s)	245, 596, 610, 817, 1165, 1193
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	3 cut(s)	147, 228, 337
TaqII	GACCGA	1 cut(s)	1015
TasI	AATT	3 cut(s)	143, 393, 922
TatI	WGTACW	3 cut(s)	643, 650, 1078
TfiI	GAWTC	2 cut(s)	283, 1127
Tru1I	TTAA	2 cut(s)	792, 933
Tru9I	TTAA	2 cut(s)	792, 933
TscAI	CASTG	4 cut(s)	123, 138, 601, 1196
TseFI	GTSAC	2 cut(s)	175, 728
Tsp45I	GTSAC	2 cut(s)	175, 728
TspDTI	ATGAA	2 cut(s)	901, 916
TspGWI	ACGGA	2 cut(s)	223, 420
TspRI	CASTG	4 cut(s)	123, 138, 601, 1196
Van91I	CCANNNNNTGG	1 cut(s)	192
VpaK11BI	GGWCC	3 cut(s)	557, 944, 980
VspI	ATTAAT	1 cut(s)	933
XcmI	CCANNNNNNNNNTGG	3 cut(s)	115, 189, 884
XmaJI	CCTAGG	1 cut(s)	983
XmiI	GTMKAC	2 cut(s)	688, 819
XmnI	GAANNNNTTC	1 cut(s)	1110
XspI	CTAG	4 cut(s)	486, 779, 965, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.