Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005808

Physical Location & Seq

Genomic Coordinates Forward (+)

13755289 .. 13757857

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAAGCGACGATGACTATGACTATGGCAAGTCTCAAACCCAAATCGATACGACCCAAAAGCCCTTACCTTCCCCATTCATTGAACTCAAGAAGAATCTTCAAGTCCTTGTCTCTCCCCAATCCTCCAGTCGGAGCCCCGACACTGGTGGATCAATTCGACCCGACGATCCCAATAGAGCGAGCCGTGACTCCACCCACCTCATGGTACACCGACCCTTCCTTTTACGCTCAAGAACTCGACTCCGTTTTCTACCGTGGATGGCAAGCCGTTGGATATACTGAACAGATAAAGAATCCTGGGGAATTTTTCACCGGCAGATTGGGGAATGTAGAGTTTGTTGTGTGTCGAGATGAGCATGGCAAGCTTCAAGCTTTCCACAATGTTTGTCGTCATCATGCCTCAATTCTTGCCTACGGAAGTGGCCGAAAGTCGTGTTTCGTGTGCCCTTATCATGGGTGGACATATGGATTGGACGGCGCACTTCTCAAGGCAACTAGAATAACAGGAATACAGAACTTCAATAAACATGAGTTTGGGCTTACACCAGTAAAAGTAGCTACTTGGGGGCCGTTTGTTCTTGCAAATATGGAGCCAGAGGTTGACTGTGATGTAGAAATCGTGGAGAGCGAATGGCTTGGGAGCTCTTCAGATGTACTGAGTACAAATGGGGTTGATTCATCATTAAGTTATGTTTGTAGACGTGAATATACGATTGAATGTAACTGGAAGGTCTTTTGTGACAACTACTTAGATGGGGGATATCATGTGCCTTATGCACATAAAGGCCTAGCATCTGGTCTTAACCTTGATGGTTACTCTACCACAGTATACGAAAAGGTCAGCATTCAAAAGTGTGAAGGTGGTTCAACAGAGAGGAAAAATGACTATGATCGGCTTGGATCAAAAGCCCTTTATGCTTTCATTTATCCCAATTTCATGATTAATAGGTATGGACCATGGATGGACACCAATCTAGTAATCCCTCTTGGACATAGGAAATGTCAGGTGATATTTGATTACTTCCTTGAAGCTTTGGTCAAGGATGACAGAGATTTCATAGAGAGGAGTTTGAAAGAGAGTGAAAAAGTACAGATGGAAGATGTCATGCTGTGTGAAGGTGTTCAAAGAGGTCTTGAATCACCCGCATACAATATTGGTAGATACGCTCCAACGGTTGAAAATGCAATGCACCATTTTCACTGTCTGCTACATGAGAGCATAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 map00260

Pfam Domains

Protein Families

Rieske Ring_hydroxyl_A

Protein Analysis

410

Amino Acids

46.5

Weight (kDa)

6.17

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	88 - 174	1.1e-18	Rieske [2Fe-2S] domain
Ring_hydroxyl_A	PF00848	229 - 406	3.5e-30	Ring hydroxylating alpha subunit (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29890
fragaria_vesca	FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930 FvH4_4g06930
malus_domestica	MD13G1241100.v1.1
prunus_persica	Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1 Prupe.1G072500_v2.0.a1
pyrus_communis	pycom13g21200
rosa_chinensis	RchiOBHm_Chr4g0398871
rosa_laevigata	RLG00000009310 RLG00000009315
rosa_multiflora	Rmu_ssc0000064.1_g000028
rosa_roxburghii	Rroxscaffold_5G00343910 Rroxscaffold_7G00183470
rosa_rugosa	Rorug04G0012400 Rorug04G0012800 Rorug04G0012900 Rorug04G0013000 Rorug04G0013100
rosa_samantha	Rh4AG090500 Rh4BG087800 Rh4CG098800 Rh4DG082800
rosa_wichuraiana	Rw4G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	204
AccI	GTMKAC	2 cut(s)	700, 831
AciI	CCGC	1 cut(s)	1146
AclWI	GGATC	3 cut(s)	159, 163, 910
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	4 cut(s)	209, 657, 664, 1092
AfiI	CCNNNNNNNGG	4 cut(s)	131, 145, 204, 455
AjiI	CACGTC	1 cut(s)	704
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	5 cut(s)	367, 374, 560, 645, 1034
AluI	AGCT	5 cut(s)	367, 374, 560, 645, 1034
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	2 cut(s)	38, 117
AlwI	GGATC	3 cut(s)	159, 163, 910
AoxI	GGCC	3 cut(s)	424, 569, 787
ApoI	RAATTY	1 cut(s)	305
AseI	ATTAAT	1 cut(s)	945
Asp700I	GAANNNNTTC	1 cut(s)	1122
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	2 cut(s)	569, 956
AsuHPI	GGTGA	3 cut(s)	304, 1021, 1134
AvaII	GGWCC	1 cut(s)	956
BaeGI	GKGCMC	1 cut(s)	449
BanII	GRGCYC	2 cut(s)	139, 647
Bbv12I	GWGCWC	1 cut(s)	647
BccI	CCATC	5 cut(s)	255, 749, 806, 958, 1090
BceAI	ACGGC	4 cut(s)	170, 254, 493, 556
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	38, 117
BfaI	CTAG	3 cut(s)	498, 791, 977
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	956
BmgBI	CACGTC	1 cut(s)	704
BmgT120I	GGNCC	2 cut(s)	569, 956
BmiI	GGNNCC	3 cut(s)	136, 570, 594
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	803
BpmI	CTGGAG	1 cut(s)	111
BpuEI	CTTGAG	3 cut(s)	73, 216, 473
Bsa29I	ATCGAT	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	256, 299, 959
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 145, 204, 455
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	4 cut(s)	128, 150, 548, 731
Bse3DI	GCAATG	1 cut(s)	1194
BseBI	CCWGG	1 cut(s)	300
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	3 cut(s)	256, 299, 959
BseGI	GGATG	3 cut(s)	266, 969, 1051
BseLI	CCNNNNNNNGG	4 cut(s)	131, 145, 204, 455
BseMI	GCAATG	1 cut(s)	1194
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	4 cut(s)	128, 150, 548, 731
BseRI	GAGGAG	1 cut(s)	1081
BseSI	GKGCMC	1 cut(s)	449
BshFI	GGCC	3 cut(s)	426, 571, 789
BshVI	ATCGAT	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	4 cut(s)	131, 145, 204, 455
BsmAI	GTCTC	2 cut(s)	38, 117
BsmI	GAATGC	1 cut(s)	846
BsnI	GGCC	3 cut(s)	426, 571, 789
Bsp1286I	GDGCHC	3 cut(s)	139, 449, 647
Bsp143I	GATC	4 cut(s)	151, 168, 892, 902
Bsp19I	CCATGG	1 cut(s)	959
BspACI	CCGC	1 cut(s)	1146
BspANI	GGCC	3 cut(s)	426, 571, 789
BspCNI	CTCAG	1 cut(s)	651
BspDI	ATCGAT	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	939
BspLI	GGNNCC	3 cut(s)	136, 570, 594
BspPI	GGATC	3 cut(s)	159, 163, 910
BspQI	GCTCTTC	1 cut(s)	652
BsrDI	GCAATG	1 cut(s)	1194
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	4 cut(s)	128, 150, 548, 731
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	3 cut(s)	256, 299, 959
BssMI	GATC	4 cut(s)	151, 168, 892, 902
BssNAI	GTATAC	1 cut(s)	832
BssT1I	CCWWGG	1 cut(s)	959
Bst1107I	GTATAC	1 cut(s)	832
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	5 cut(s)	257, 608, 829, 1177, 1205
Bst6I	CTCTTC	1 cut(s)	652
BstC8I	GCNNGC	3 cut(s)	183, 267, 365
BstDEI	CTNAG	2 cut(s)	659, 751
BstDSI	CCRYGG	2 cut(s)	256, 959
BstF5I	GGATG	3 cut(s)	266, 969, 1051
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	4 cut(s)	154, 171, 895, 905
BstMAI	GTCTC	2 cut(s)	38, 117
BstMBI	GATC	4 cut(s)	151, 168, 892, 902
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 917
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	449
BstZ17I	GTATAC	1 cut(s)	832
Bsu15I	ATCGAT	1 cut(s)	47
BsuRI	GGCC	3 cut(s)	426, 571, 789
BsuTUI	ATCGAT	1 cut(s)	47
BtgI	CCRYGG	2 cut(s)	256, 959
BtrI	CACGTC	1 cut(s)	704
BtsCI	GGATG	3 cut(s)	266, 969, 1051
BtsIMutI	CAGTG	2 cut(s)	143, 1201
Cac8I	GCNNGC	3 cut(s)	183, 267, 365
CciI	TCATGA	1 cut(s)	939
CfoI	GCGC	1 cut(s)	482
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	569, 956
ClaI	ATCGAT	1 cut(s)	47
Csp6I	GTAC	4 cut(s)	208, 656, 663, 1091
CspCI	CAANNNNNGTGG	2 cut(s)	368, 403
CviQI	GTAC	4 cut(s)	208, 656, 663, 1091
DdeI	CTNAG	2 cut(s)	659, 751
DpnI	GATC	4 cut(s)	153, 170, 894, 904
DpnII	GATC	4 cut(s)	151, 168, 892, 902
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	652
EarI	CTCTTC	1 cut(s)	652
Ecl136II	GAGCTC	1 cut(s)	645
Eco130I	CCWWGG	1 cut(s)	959
Eco147I	AGGCCT	1 cut(s)	789
Eco24I	GRGCYC	2 cut(s)	139, 647
Eco32I	GATATC	1 cut(s)	764
Eco47I	GGWCC	1 cut(s)	956
Eco53kI	GAGCTC	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	959
EcoT38I	GRGCYC	2 cut(s)	139, 647
ErhI	CCWWGG	1 cut(s)	959
FauI	CCCGC	1 cut(s)	1153
FauNDI	CATATG	1 cut(s)	466
FblI	GTMKAC	2 cut(s)	700, 831
FokI	GGATG	3 cut(s)	273, 976, 1058
FriOI	GRGCYC	2 cut(s)	139, 647
FspBI	CTAG	3 cut(s)	498, 791, 977
GlaI	GCGC	1 cut(s)	481
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	426, 571, 789
HapII	CCGG	1 cut(s)	315
HhaI	GCGC	1 cut(s)	482
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	3 cut(s)	365, 372, 1032
HinfI	GANTC	6 cut(s)	96, 190, 242, 295, 677, 1139
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	3 cut(s)	304, 1021, 1134
Hpy166II	GTNNAC	5 cut(s)	210, 462, 604, 701, 832
Hpy188I	TCNGA	2 cut(s)	134, 652
Hpy188III	TCNNGA	5 cut(s)	90, 233, 350, 940, 1136
Hpy8I	GTNNAC	5 cut(s)	210, 462, 604, 701, 832
Hpy99I	CGWCG	2 cut(s)	13, 169
HpyAV	CCTTC	5 cut(s)	80, 228, 724, 854, 1112
HpyCH4III	ACNGT	5 cut(s)	257, 608, 829, 1177, 1205
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	4 cut(s)	584, 779, 1187, 1192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 917
HpyF3I	CTNAG	2 cut(s)	659, 751
HpySE526I	ACGT	1 cut(s)	703
HspAI	GCGC	1 cut(s)	480
Kzo9I	GATC	4 cut(s)	151, 168, 892, 902
LguI	GCTCTTC	1 cut(s)	652
LmnI	GCTCC	4 cut(s)	134, 592, 642, 1174
LweI	GCATC	1 cut(s)	803
MaeI	CTAG	3 cut(s)	498, 791, 977
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	4 cut(s)	187, 722, 740, 815
MalI	GATC	4 cut(s)	153, 170, 894, 904
MboI	GATC	4 cut(s)	151, 168, 892, 902
MboII	GAAGA	4 cut(s)	91, 105, 639, 1112
MhlI	GDGCHC	3 cut(s)	139, 449, 647
MluCI	AATT	4 cut(s)	155, 305, 405, 934
MlyI	GAGTC	2 cut(s)	184, 236
MmeI	TCCRAC	3 cut(s)	112, 253, 1196
MnlI	CCTC	8 cut(s)	135, 211, 412, 592, 870, 996, 1059, 1124
MroXI	GAANNNNTTC	1 cut(s)	1122
MseI	TTAA	3 cut(s)	686, 804, 945
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	364, 917
NcoI	CCATGG	1 cut(s)	959
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	4 cut(s)	151, 168, 892, 902
NlaIV	GGNNCC	3 cut(s)	136, 570, 594
NmuCI	GTSAC	2 cut(s)	187, 740
PagI	TCATGA	1 cut(s)	939
PceI	AGGCCT	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	652
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PctI	GAATGC	1 cut(s)	846
PdmI	GAANNNNTTC	1 cut(s)	1122
PfeI	GAWTC	4 cut(s)	96, 295, 677, 1139
PflMI	CCANNNNNTGG	1 cut(s)	204
PleI	GAGTC	2 cut(s)	184, 236
PpsI	GAGTC	2 cut(s)	184, 236
PshBI	ATTAAT	1 cut(s)	945
Psp124BI	GAGCTC	1 cut(s)	647
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	136, 570, 594
PspPI	GGNCC	2 cut(s)	569, 956
RsaI	GTAC	4 cut(s)	209, 657, 664, 1092
RsaNI	GTAC	4 cut(s)	208, 656, 663, 1091
SacI	GAGCTC	1 cut(s)	647
SapI	GCTCTTC	1 cut(s)	652
SaqAI	TTAA	3 cut(s)	686, 804, 945
Sau3AI	GATC	4 cut(s)	151, 168, 892, 902
Sau96I	GGNCC	2 cut(s)	569, 956
SchI	GAGTC	2 cut(s)	184, 236
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	3 cut(s)	139, 449, 647
SfaNI	GCATC	1 cut(s)	803
SinI	GGWCC	1 cut(s)	956
SmlI	CTYRAG	3 cut(s)	88, 231, 488
SmoI	CTYRAG	3 cut(s)	88, 231, 488
Sse9I	AATT	4 cut(s)	155, 305, 405, 934
SseBI	AGGCCT	1 cut(s)	789
SsiI	CCGC	1 cut(s)	1146
SspI	AATATT	1 cut(s)	1156
SspMI	CTAG	3 cut(s)	498, 791, 977
SstI	GAGCTC	1 cut(s)	647
StuI	AGGCCT	1 cut(s)	789
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	959
TaaI	ACNGT	5 cut(s)	257, 608, 829, 1177, 1205
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	4 cut(s)	47, 159, 240, 349
TasI	AATT	4 cut(s)	155, 305, 405, 934
TatI	WGTACW	3 cut(s)	655, 662, 1090
TfiI	GAWTC	4 cut(s)	96, 295, 677, 1139
Tru1I	TTAA	3 cut(s)	686, 804, 945
Tru9I	TTAA	3 cut(s)	686, 804, 945
TscAI	CASTG	2 cut(s)	150, 1208
TseFI	GTSAC	2 cut(s)	187, 740
Tsp45I	GTSAC	2 cut(s)	187, 740
TspDTI	ATGAA	5 cut(s)	69, 669, 913, 928, 1048
TspGWI	ACGGA	2 cut(s)	235, 432
TspRI	CASTG	2 cut(s)	150, 1208
Van91I	CCANNNNNTGG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	956
VspI	ATTAAT	1 cut(s)	945
XapI	RAATTY	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XmiI	GTMKAC	2 cut(s)	700, 831
XmnI	GAANNNNTTC	1 cut(s)	1122
XspI	CTAG	3 cut(s)	498, 791, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.