Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008112

Physical Location & Seq

Genomic Coordinates Forward (+)

8223338 .. 8224168

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08314.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTGCTCAACGTTTCAATCAAGGAGATCGATCAGCCGGAGGTCATCCACGCCTACCCCGCCAACGTCCCCAACCTCTTCACCGTACACGTGGACTCTAAGCGCATCTTGACCGTCCTCACCGACCATGACGGCATCGCCTCCAAGTGGCTCACCAAGCTCCTCCGCTCCAAATCCACCAACACCAAGCCTCCTCTCCCCGGCGCCGCCTCCACCTTCCCTCCCGACTCCATCTTCGTCGGCCTTGTCACCGAGGAGAACCTCCCCTTCTACGGCCCTCGCCCCTACGACTCCATCGACCACTGCCTCGACCTCCTCACCCTTTGTGTCGGCTCTCACTACTGCCTCATGCTTGAGCTCAAGGGCGGCTACTATGACCCCCAATCGGAGACCATAGTGGTGCATGATGGAGCTCAACGAGCTCGGCTCGCATCGACGTTTCCAAGCGACGGCGTGCAGACGACGTCAAAGAACGACCAGATCGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

164

Amino Acids

17.98

Weight (kDa)

5.39

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008112)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29360 FvH4_3g20500 FvH4_4g00230 FvH4_4g08314
malus_domestica	MD04G1000100.v1.1
prunus_persica	Prupe.4G184900_v2.0.a1 Prupe.4G185000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0034401 RchiOBHm_Chr5g0034421
rosa_laevigata	RLG00000033545 RLG00000033546
rosa_roxburghii	Rroxscaffold_1G00045880
rosa_rugosa	Rorug05G0145800 Rorug05G0145800
rosa_samantha	Rh5AG237400 Rh5AG237500 Rh5BG238100 Rh5BG238200 Rh5CG268200 Rh5CG268600 Rh5DG245700 Rh5DG245800 Rh6CG402000
rosa_wichuraiana	Rw5G021710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	203
AccBSI	CCGCTC	1 cut(s)	168
AciI	CCGC	4 cut(s)	60, 166, 207, 366
AclI	AACGTT	1 cut(s)	12
AcvI	CACGTG	1 cut(s)	91
AcyI	GRCGYC	2 cut(s)	204, 464
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	5 cut(s)	147, 200, 272, 385, 449
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	18
AluBI	AGCT	4 cut(s)	160, 358, 413, 422
AluI	AGCT	4 cut(s)	160, 358, 413, 422
Alw21I	GWGCWC	4 cut(s)	9, 360, 415, 424
Alw26I	GTCTC	1 cut(s)	383
AoxI	GGCC	2 cut(s)	241, 274
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	2 cut(s)	105, 206
AspS9I	GGNCC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	5 cut(s)	73, 112, 145, 241, 310
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	3 cut(s)	360, 415, 424
BbrPI	CACGTG	1 cut(s)	91
Bbv12I	GWGCWC	4 cut(s)	9, 360, 415, 424
BccI	CCATC	3 cut(s)	239, 302, 401
BceAI	ACGGC	3 cut(s)	148, 289, 466
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	383
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	2 cut(s)	207, 367
BlsI	GCNGC	2 cut(s)	208, 368
Bme1390I	CCNGG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	3 cut(s)	114, 144, 440
BplI	GAGNNNNNCTC	2 cut(s)	411, 443
BpuEI	CTTGAG	2 cut(s)	344, 374
BpuMI	CCSGG	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	91
BsaHI	GRCGYC	2 cut(s)	204, 464
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	199, 252
BsaXI	ACNNNNNCTCC	4 cut(s)	175, 205, 205, 235
Bsc4I	CCNNNNNNNGG	5 cut(s)	147, 200, 272, 385, 449
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	199, 252
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	5 cut(s)	147, 200, 272, 385, 449
BseRI	GAGGAG	4 cut(s)	152, 183, 269, 305
BsgI	GTGCAG	1 cut(s)	476
BshFI	GGCC	2 cut(s)	243, 276
BshNI	GGYRCC	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	30
BsiHKAI	GWGCWC	4 cut(s)	9, 360, 415, 424
BsiSI	CCGG	2 cut(s)	38, 201
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	5 cut(s)	147, 200, 272, 385, 449
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	243, 276
Bso31I	GGTCTC	1 cut(s)	383
Bsp1286I	GDGCHC	4 cut(s)	9, 360, 415, 424
Bsp143I	GATC	3 cut(s)	27, 31, 480
BspACI	CCGC	4 cut(s)	60, 166, 207, 366
BspANI	GGCC	2 cut(s)	243, 276
BspDI	ATCGAT	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	199, 252
BssMI	GATC	3 cut(s)	27, 31, 480
BssNI	GRCGYC	2 cut(s)	204, 464
Bst4CI	ACNGT	2 cut(s)	85, 115
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	2 cut(s)	204, 464
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	429, 455
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	105, 206
BstKTI	GATC	3 cut(s)	30, 34, 483
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	3 cut(s)	27, 31, 480
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 157, 419, 428
BstSCI	CCNGG	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	243, 276
BsuTUI	ATCGAT	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	45
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	429, 455
CfoI	GCGC	2 cut(s)	105, 206
Cfr13I	GGNCC	1 cut(s)	275
ClaI	ATCGAT	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	3 cut(s)	128, 349, 404
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	99
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	3 cut(s)	29, 33, 482
DpnII	GATC	3 cut(s)	27, 31, 480
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Ecl136II	GAGCTC	3 cut(s)	358, 413, 422
Eco24I	GRGCYC	3 cut(s)	360, 415, 424
Eco31I	GGTCTC	1 cut(s)	383
Eco53kI	GAGCTC	3 cut(s)	358, 413, 422
Eco72I	CACGTG	1 cut(s)	91
EcoICRI	GAGCTC	3 cut(s)	358, 413, 422
EcoT38I	GRGCYC	3 cut(s)	360, 415, 424
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
FaeI	CATG	3 cut(s)	131, 352, 407
FaiI	YATR	5 cut(s)	129, 350, 375, 395, 405
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	127, 348, 403
FauI	CCCGC	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	207, 367
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	3 cut(s)	360, 415, 424
Fsp4HI	GCNGC	2 cut(s)	207, 367
GlaI	GCGC	2 cut(s)	104, 205
GluI	GCNGC	2 cut(s)	207, 367
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	243, 276
HapII	CCGG	2 cut(s)	38, 201
HhaI	GCGC	2 cut(s)	105, 206
Hin1I	GRCGYC	2 cut(s)	204, 464
Hin1II	CATG	3 cut(s)	131, 352, 407
Hin6I	GCGC	2 cut(s)	103, 204
HinP1I	GCGC	2 cut(s)	103, 204
HinfI	GANTC	3 cut(s)	95, 227, 290
HpaII	CCGG	2 cut(s)	38, 201
HphI	GGTGA	5 cut(s)	73, 112, 145, 241, 310
Hpy166II	GTNNAC	2 cut(s)	88, 94
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	3 cut(s)	109, 224, 484
Hpy8I	GTNNAC	2 cut(s)	88, 94
Hpy99I	CGWCG	4 cut(s)	242, 439, 452, 466
HpyAV	CCTTC	2 cut(s)	226, 277
HpyCH4III	ACNGT	2 cut(s)	85, 115
HpyCH4IV	ACGT	5 cut(s)	12, 66, 90, 437, 464
HpyCH4V	TGCA	2 cut(s)	403, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 157, 419, 428
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	5 cut(s)	12, 66, 90, 437, 464
Hsp92I	GRCGYC	2 cut(s)	204, 464
Hsp92II	CATG	3 cut(s)	131, 352, 407
HspAI	GCGC	2 cut(s)	103, 204
KasI	GGCGCC	1 cut(s)	203
Kzo9I	GATC	3 cut(s)	27, 31, 480
LmnI	GCTCC	3 cut(s)	165, 173, 410
LpnPI	CCDG	2 cut(s)	51, 214
LweI	GCATC	3 cut(s)	114, 144, 440
MaeII	ACGT	5 cut(s)	12, 66, 90, 437, 464
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	3 cut(s)	29, 33, 482
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	3 cut(s)	27, 31, 480
MboII	GAAGA	2 cut(s)	70, 226
MhlI	GDGCHC	4 cut(s)	9, 360, 415, 424
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	3 cut(s)	89, 221, 284
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	2 cut(s)	38, 201
MspR9I	CCNGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	59, 157, 419, 428
NarI	GGCGCC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	27, 31, 480
NlaIII	CATG	3 cut(s)	131, 352, 407
NlaIV	GGNNCC	1 cut(s)	205
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	2 cut(s)	294, 480
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	208, 368
PleI	GAGTC	3 cut(s)	89, 221, 284
PluTI	GGCGCC	1 cut(s)	207
PmaCI	CACGTG	1 cut(s)	91
PmlI	CACGTG	1 cut(s)	91
PpsI	GAGTC	3 cut(s)	89, 221, 284
Ppu21I	YACGTR	1 cut(s)	91
Psp124BI	GAGCTC	3 cut(s)	360, 415, 424
Psp1406I	AACGTT	1 cut(s)	12
PspCI	CACGTG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	275
PsyI	GACNNNGTC	1 cut(s)	463
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	3 cut(s)	360, 415, 424
SatI	GCNGC	2 cut(s)	207, 367
Sau3AI	GATC	3 cut(s)	27, 31, 480
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	3 cut(s)	89, 221, 284
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	4 cut(s)	9, 360, 415, 424
SfaNI	GCATC	3 cut(s)	114, 144, 440
SfoI	GGCGCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	353, 359
SmoI	CTYRAG	2 cut(s)	353, 359
SsiI	CCGC	4 cut(s)	60, 166, 207, 366
SspDI	GGCGCC	1 cut(s)	203
SstI	GAGCTC	3 cut(s)	360, 415, 424
StyD4I	CCNGG	1 cut(s)	199
TaaI	ACNGT	2 cut(s)	85, 115
TaiI	ACGT	5 cut(s)	15, 69, 93, 440, 467
TaqI	TCGA	5 cut(s)	30, 297, 309, 434, 483
TauI	GCSGC	2 cut(s)	209, 369
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspRI	CASTG	1 cut(s)	308
Tth111I	GACNNNGTC	1 cut(s)	463
ZraI	GACGTC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.