Rh6CG402000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008112
Physical Location & Seq
Reverse (-)
58837516 .. 58839294
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG402000.1

Sequence Viewer

Length: 339 bp
ATGCATGTCGAGGAGATAGCAGAGCCGGAGGTCATCCGTGTCTACACCGAGTACCTCCACGACCTCTTCACCGTCCACGTGGACTCCAAGCGCATCCTCACCGTCCTTACCGACAACGAAGCCATCGCCTCCAAGTGGCTCAAGGAGGTCCTCCGCTCCAAAGCCTCCAACACCAAGCCTCCTCTCCCCGGCACCCTCACCACCTTCAGCCCCGACTCCATCTTCGTCGGCCTCGTCGCCGAGCAACACTCCCCCTTCTACTGCTCCCGCCCCTATGACGAAACCGACCAGACCTTCGACTTCCTCACCCTCTGCGTCGGCTCCCACTGCCTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.73

Weight (kDa)

5.04

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccBSI CCGCTC 1 cut(s) 156
AccI GTMKAC 1 cut(s) 42
AciI CCGC 2 cut(s) 154, 268
AcuI CTGAAG 1 cut(s) 190
AcvI CACGTG 1 cut(s) 79
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 135, 188
AoxI GGCC 1 cut(s) 229
ArsI GACNNNNNNTTYG 4 cut(s) 206, 238, 278, 310
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 4 cut(s) 61, 91, 190, 298
AvaII GGWCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 191
BbrPI CACGTG 1 cut(s) 79
BccI CCATC 2 cut(s) 131, 227
BcnI CCSGG 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 2 cut(s) 193, 322
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 187
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 163, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 188
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 2 cut(s) 33, 93
BseLI CCNNNNNNNGG 2 cut(s) 135, 188
BseRI GAGGAG 2 cut(s) 26, 171
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 191
BsiSI CCGG 2 cut(s) 26, 189
BslI CCNNNNNNNGG 2 cut(s) 135, 188
BsnI GGCC 1 cut(s) 231
BspACI CCGC 2 cut(s) 154, 268
BspANI GGCC 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 193, 322
BspT107I GGYRCC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 73, 103
Bst6I CTCTTC 1 cut(s) 71
BstBAI YACGTR 1 cut(s) 79
BstF5I GGATG 2 cut(s) 33, 93
BstHHI GCGC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 187
BsuRI GGCC 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 2 cut(s) 33, 93
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 325
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 1 cut(s) 304
Csp6I GTAC 1 cut(s) 52
CviAII CATG 2 cut(s) 5, 334
CviJI RGCY 8 cut(s) 25, 122, 139, 164, 178, 210, 231, 321
CviKI_1 RGCY 8 cut(s) 25, 122, 139, 164, 178, 210, 231, 321
CviQI GTAC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 190
Eco72I CACGTG 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 337
FaiI YATR 3 cut(s) 6, 276, 335
FatI CATG 2 cut(s) 4, 333
FauI CCCGC 1 cut(s) 275
FblI GTMKAC 1 cut(s) 42
FokI GGATG 2 cut(s) 20, 80
GlaI GCGC 1 cut(s) 92
HaeIII GGCC 1 cut(s) 231
HapII CCGG 2 cut(s) 26, 189
HgaI GACGC 1 cut(s) 304
HhaI GCGC 1 cut(s) 93
Hin1II CATG 2 cut(s) 8, 337
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 2 cut(s) 83, 215
HpaII CCGG 2 cut(s) 26, 189
HphI GGTGA 4 cut(s) 61, 91, 190, 298
Hpy166II GTNNAC 3 cut(s) 43, 76, 82
Hpy8I GTNNAC 3 cut(s) 43, 76, 82
Hpy99I CGWCG 3 cut(s) 230, 239, 320
HpyAV CCTTC 3 cut(s) 214, 265, 304
HpyCH4III ACNGT 2 cut(s) 73, 103
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 8, 337
HspAI GCGC 1 cut(s) 91
LmnI GCTCC 3 cut(s) 161, 269, 326
LpnPI CCDG 3 cut(s) 39, 202, 302
LweI GCATC 1 cut(s) 102
MaeII ACGT 1 cut(s) 78
MbiI CCGCTC 1 cut(s) 156
MboII GAAGA 2 cut(s) 58, 214
MlyI GAGTC 2 cut(s) 77, 209
MmeI TCCRAC 1 cut(s) 192
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 2 cut(s) 26, 189
MspR9I CCNGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 327
NciI CCSGG 1 cut(s) 189
NlaIII CATG 2 cut(s) 8, 337
NlaIV GGNNCC 2 cut(s) 193, 322
NmeAIII GCCGAG 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PleI GAGTC 2 cut(s) 77, 209
PmaCI CACGTG 1 cut(s) 79
PmlI CACGTG 1 cut(s) 79
PpsI GAGTC 2 cut(s) 77, 209
Ppu21I YACGTR 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
PspCI CACGTG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 193, 322
PspPI GGNCC 1 cut(s) 148
PspPPI RGGWCCY 1 cut(s) 148
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 2 cut(s) 77, 209
ScrFI CCNGG 1 cut(s) 189
SetI ASST 7 cut(s) 33, 57, 66, 81, 150, 206, 296
SfaNI GCATC 1 cut(s) 102
SinI GGWCC 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SsiI CCGC 2 cut(s) 154, 268
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 73, 103
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 9, 297
TscAI CASTG 1 cut(s) 332
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 148
XceI RCATGY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.