RchiOBHm_Chr5g0034421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008112
Physical Location & Seq
Forward (+)
28275356 .. 28276551
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31342

Sequence Viewer

Length: 786 bp
ATGGTGCTCGAGGTTTCAGTCGAGGAGATCACAGAGCCGGAGGTCATCCGCGTCTACACCGAGTACCTCCACGACCTCTTCACCATCCATGTGGACTCTAAGCGCATCCTCACTGTCCTCACCGACAACGAAGCCGTCGCCTCCAAGTGGCTCAAGGAGCAACACTCCCCCTTCTACGGCTCCCGCCCCTACGACGAAACCGACCAGACCTTCGACCTCCTCACCCTCTGCGTCGGCTCTCACTGCCTCATGTACGAGCTCCCTGGCCCCGAGTACCGCCCCTGGTGGTCCGACGAGCTTCCCTACGACGACGCGCCCAAGGTCTTCAAGGCCTTCTTCCAAAACCCTAGGGTCGTCGTCCTCGGCACCAGCATGGCCAAGGTCGCCAAGAGGCTCGAGGCCAGGCACGGCATCCAGATCAAAAACGCCGTGGATCTGAACCAGCTCGCCGTCAAAGGGATGCAGAGGCACGATCTGGACCTGGCTCGCTACGACTTTGAGAAGCTGACCATGACGGTGCTCGGGAAGGAGTTTGACGTCATCAAGCCGGAGAGGGTTTACTGGTATCGGAGGCAGGCGTACTGCAACCGCTGGGGAATTTTTTACCGCGAAGACTGCGATAGGCTGACGAGCGAGAAGGTCATGTTCACCACTGTGGATGCTTATTTGCGCCTCATCATGTGCTTCAAGCTTCTGGAGGCCATGGACGGTCCTGGTGAGTCCTCTTCCTCCAACAAGAAGAAGAAGAAGAAGACCAAGAAGAAAACCACCAAAAGGAGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

30.6

Weight (kDa)

8.44

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 365
AccI GTMKAC 1 cut(s) 54
AccII CGCG 3 cut(s) 51, 314, 609
AciI CCGC 5 cut(s) 49, 184, 277, 589, 607
AclWI GGATC 1 cut(s) 441
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 1 cut(s) 597
AcyI GRCGYC 1 cut(s) 537
AfaI GTAC 4 cut(s) 65, 254, 275, 581
AfiI CCNNNNNNNGG 4 cut(s) 147, 176, 456, 774
AgsI TTSAA 2 cut(s) 328, 688
AjnI CCWGG 5 cut(s) 262, 281, 401, 480, 712
AleI CACNNNNGTG 1 cut(s) 653
AluBI AGCT 5 cut(s) 259, 298, 445, 505, 691
AluI AGCT 5 cut(s) 259, 298, 445, 505, 691
Alw21I GWGCWC 3 cut(s) 9, 261, 522
AlwI GGATC 1 cut(s) 441
Ama87I CYCGRG 4 cut(s) 8, 269, 395, 521
AoxI GGCC 5 cut(s) 265, 330, 375, 399, 699
ApoI RAATTY 1 cut(s) 597
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AspA2I CCTAGG 1 cut(s) 347
AspLEI GCGC 3 cut(s) 105, 316, 672
AspS9I GGNCC 4 cut(s) 266, 288, 478, 710
AsuHPI GGTGA 5 cut(s) 73, 112, 214, 640, 728
AvaI CYCGRG 4 cut(s) 8, 269, 395, 521
AvaII GGWCC 3 cut(s) 288, 478, 710
AvrII CCTAGG 1 cut(s) 347
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 3 cut(s) 316, 618, 758
Bbv12I GWGCWC 3 cut(s) 9, 261, 522
BccI CCATC 1 cut(s) 92
BceAI ACGGC 5 cut(s) 119, 193, 413, 424, 434
BciT130I CCWGG 5 cut(s) 264, 283, 403, 482, 714
BfaI CTAG 1 cut(s) 348
BlnI CCTAGG 1 cut(s) 347
Bme1390I CCNGG 5 cut(s) 264, 283, 403, 482, 714
Bme18I GGWCC 3 cut(s) 288, 478, 710
BmeT110I CYCGRG 4 cut(s) 8, 269, 395, 521
BmgT120I GGNCC 4 cut(s) 266, 288, 478, 710
BmiI GGNNCC 4 cut(s) 181, 268, 367, 779
BmrFI CCNGG 5 cut(s) 264, 283, 403, 482, 714
BmsI GCATC 4 cut(s) 114, 420, 450, 649
BpiI GAAGAC 3 cut(s) 316, 618, 758
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpmI CTGGAG 1 cut(s) 716
BpuEI CTTGAG 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 537
BsaJI CCNNGG 8 cut(s) 262, 281, 318, 347, 361, 378, 429, 702
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 176, 456, 774
Bse1I ACTGG 2 cut(s) 566, 781
BseBI CCWGG 5 cut(s) 264, 283, 403, 482, 714
BseDI CCNNGG 8 cut(s) 262, 281, 318, 347, 361, 378, 429, 702
BseGI GGATG 6 cut(s) 45, 84, 105, 411, 465, 664
BseLI CCNNNNNNNGG 4 cut(s) 147, 176, 456, 774
BseNI ACTGG 2 cut(s) 566, 781
BseRI GAGGAG 2 cut(s) 38, 209
BseYI CCCAGC 1 cut(s) 591
Bsh1236I CGCG 3 cut(s) 51, 314, 609
BshFI GGCC 5 cut(s) 267, 332, 377, 401, 701
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 3 cut(s) 9, 261, 522
BsiHKCI CYCGRG 4 cut(s) 8, 269, 395, 521
BsiSI CCGG 2 cut(s) 38, 548
BslI CCNNNNNNNGG 4 cut(s) 147, 176, 456, 774
BsnI GGCC 5 cut(s) 267, 332, 377, 401, 701
BsoBI CYCGRG 4 cut(s) 8, 269, 395, 521
Bsp1286I GDGCHC 3 cut(s) 9, 261, 522
Bsp143I GATC 4 cut(s) 27, 417, 433, 472
Bsp19I CCATGG 1 cut(s) 702
BspACI CCGC 5 cut(s) 49, 184, 277, 589, 607
BspANI GGCC 5 cut(s) 267, 332, 377, 401, 701
BspFNI CGCG 3 cut(s) 51, 314, 609
BspLI GGNNCC 4 cut(s) 181, 268, 367, 779
BspPI GGATC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 365
BsrI ACTGG 2 cut(s) 566, 781
BssECI CCNNGG 8 cut(s) 262, 281, 318, 347, 361, 378, 429, 702
BssMI GATC 4 cut(s) 27, 417, 433, 472
BssNI GRCGYC 1 cut(s) 537
BssT1I CCWWGG 4 cut(s) 318, 347, 378, 702
Bst2UI CCWGG 5 cut(s) 264, 283, 403, 482, 714
Bst4CI ACNGT 4 cut(s) 115, 517, 655, 710
Bst6I CTCTTC 2 cut(s) 83, 730
BstACI GRCGYC 1 cut(s) 537
BstC8I GCNNGC 3 cut(s) 447, 487, 576
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 2 cut(s) 429, 702
BstF5I GGATG 6 cut(s) 45, 84, 105, 411, 465, 664
BstFNI CGCG 3 cut(s) 51, 314, 609
BstHHI GCGC 3 cut(s) 105, 316, 672
BstKTI GATC 4 cut(s) 30, 420, 436, 475
BstMBI GATC 4 cut(s) 27, 417, 433, 472
BstMWI GCNNNNNNNGC 4 cut(s) 157, 243, 383, 615
BstNI CCWGG 5 cut(s) 264, 283, 403, 482, 714
BstSCI CCNGG 5 cut(s) 262, 281, 401, 480, 712
BstUI CGCG 3 cut(s) 51, 314, 609
BstV2I GAAGAC 3 cut(s) 316, 618, 758
BstX2I RGATCY 1 cut(s) 433
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 5 cut(s) 267, 332, 377, 401, 701
BtgI CCRYGG 2 cut(s) 429, 702
BtsCI GGATG 6 cut(s) 45, 84, 105, 411, 465, 664
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 3 cut(s) 111, 241, 651
Cac8I GCNNGC 3 cut(s) 447, 487, 576
CfoI GCGC 3 cut(s) 105, 316, 672
Cfr13I GGNCC 4 cut(s) 266, 288, 478, 710
CseI GACGC 3 cut(s) 40, 220, 320
Csp6I GTAC 4 cut(s) 64, 253, 274, 580
CviAII CATG 7 cut(s) 89, 250, 373, 511, 643, 679, 703
CviQI GTAC 4 cut(s) 64, 253, 274, 580
DdeI CTNAG 1 cut(s) 99
DpnI GATC 4 cut(s) 29, 419, 435, 474
DpnII GATC 4 cut(s) 27, 417, 433, 472
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 2 cut(s) 83, 730
EarI CTCTTC 2 cut(s) 83, 730
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 4 cut(s) 318, 347, 378, 702
Eco147I AGGCCT 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 3 cut(s) 288, 478, 710
Eco53kI GAGCTC 1 cut(s) 259
Eco88I CYCGRG 4 cut(s) 8, 269, 395, 521
EcoICRI GAGCTC 1 cut(s) 259
EcoRII CCWGG 5 cut(s) 262, 281, 401, 480, 712
EcoT14I CCWWGG 4 cut(s) 318, 347, 378, 702
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 4 cut(s) 318, 347, 378, 702
FaeI CATG 7 cut(s) 92, 253, 376, 514, 646, 682, 706
FaiI YATR 7 cut(s) 90, 251, 374, 512, 644, 680, 704
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 7 cut(s) 88, 249, 372, 510, 642, 678, 702
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 1 cut(s) 54
FokI GGATG 6 cut(s) 32, 71, 92, 398, 472, 671
FriOI GRGCYC 1 cut(s) 261
FspBI CTAG 1 cut(s) 348
GlaI GCGC 3 cut(s) 104, 315, 671
GsaI CCCAGC 1 cut(s) 595
GsuI CTGGAG 1 cut(s) 716
HaeIII GGCC 5 cut(s) 267, 332, 377, 401, 701
HapII CCGG 2 cut(s) 38, 548
HgaI GACGC 3 cut(s) 40, 220, 320
HhaI GCGC 3 cut(s) 105, 316, 672
Hin1I GRCGYC 1 cut(s) 537
Hin1II CATG 7 cut(s) 92, 253, 376, 514, 646, 682, 706
Hin6I GCGC 3 cut(s) 103, 314, 670
HinP1I GCGC 3 cut(s) 103, 314, 670
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 2 cut(s) 95, 719
HpaII CCGG 2 cut(s) 38, 548
HphI GGTGA 5 cut(s) 73, 112, 214, 640, 728
Hpy166II GTNNAC 4 cut(s) 55, 94, 559, 648
Hpy188I TCNGA 3 cut(s) 292, 438, 570
Hpy188III TCNNGA 4 cut(s) 415, 476, 523, 695
Hpy8I GTNNAC 4 cut(s) 55, 94, 559, 648
Hpy99I CGWCG 7 cut(s) 140, 197, 236, 296, 311, 314, 359
HpyAV CCTTC 5 cut(s) 181, 220, 343, 520, 631
HpyCH4III ACNGT 4 cut(s) 115, 517, 655, 710
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 2 cut(s) 463, 585
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 243, 383, 615
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 537
Hsp92I GRCGYC 1 cut(s) 537
Hsp92II CATG 7 cut(s) 92, 253, 376, 514, 646, 682, 706
HspAI GCGC 3 cut(s) 103, 314, 670
Kzo9I GATC 4 cut(s) 27, 417, 433, 472
LmnI GCTCC 4 cut(s) 157, 185, 264, 777
LweI GCATC 4 cut(s) 114, 420, 450, 649
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 537
MalI GATC 4 cut(s) 29, 419, 435, 474
MboI GATC 4 cut(s) 27, 417, 433, 472
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 3 cut(s) 9, 261, 522
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 1 cut(s) 597
MluNI TGGCCA 1 cut(s) 377
MlyI GAGTC 2 cut(s) 89, 728
MmeI TCCRAC 2 cut(s) 315, 756
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MslI CAYNNNNRTG 4 cut(s) 89, 371, 515, 653
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 591
MspI CCGG 2 cut(s) 38, 548
MspR9I CCNGG 5 cut(s) 264, 283, 403, 482, 714
MvaI CCWGG 5 cut(s) 264, 283, 403, 482, 714
MvnI CGCG 3 cut(s) 51, 314, 609
MwoI GCNNNNNNNGC 4 cut(s) 157, 243, 383, 615
NcoI CCATGG 1 cut(s) 702
NdeII GATC 4 cut(s) 27, 417, 433, 472
NlaIII CATG 7 cut(s) 92, 253, 376, 514, 646, 682, 706
NlaIV GGNNCC 4 cut(s) 181, 268, 367, 779
NmeAIII GCCGAG 1 cut(s) 342
OliI CACNNNNGTG 1 cut(s) 653
PaeR7I CTCGAG 2 cut(s) 8, 395
PceI AGGCCT 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PleI GAGTC 2 cut(s) 89, 727
PpsI GAGTC 2 cut(s) 89, 727
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 5 cut(s) 262, 281, 401, 480, 712
PspFI CCCAGC 1 cut(s) 591
PspGI CCWGG 5 cut(s) 262, 281, 401, 480, 712
PspN4I GGNNCC 4 cut(s) 181, 268, 367, 779
PspPI GGNCC 4 cut(s) 266, 288, 478, 710
PspXI VCTCGAGB 2 cut(s) 8, 395
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 4 cut(s) 65, 254, 275, 581
RsaNI GTAC 4 cut(s) 64, 253, 274, 580
RseI CAYNNNNRTG 4 cut(s) 89, 371, 515, 653
SacI GAGCTC 1 cut(s) 261
Sau3AI GATC 4 cut(s) 27, 417, 433, 472
Sau96I GGNCC 4 cut(s) 266, 288, 478, 710
SchI GAGTC 2 cut(s) 89, 728
ScrFI CCNGG 5 cut(s) 264, 283, 403, 482, 714
SduI GDGCHC 3 cut(s) 9, 261, 522
SfaNI GCATC 4 cut(s) 114, 420, 450, 649
Sfr274I CTCGAG 2 cut(s) 8, 395
SinI GGWCC 3 cut(s) 288, 478, 710
SlaI CTCGAG 2 cut(s) 8, 395
SmiMI CAYNNNNRTG 4 cut(s) 89, 371, 515, 653
SmlI CTYRAG 3 cut(s) 8, 152, 395
SmoI CTYRAG 3 cut(s) 8, 152, 395
Sse9I AATT 1 cut(s) 597
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 5 cut(s) 49, 184, 277, 589, 607
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 261
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 5 cut(s) 262, 281, 401, 480, 712
StyI CCWWGG 4 cut(s) 318, 347, 378, 702
TaaI ACNGT 4 cut(s) 115, 517, 655, 710
TaiI ACGT 1 cut(s) 540
TaqI TCGA 4 cut(s) 9, 21, 213, 396
TasI AATT 1 cut(s) 597
TscAI CASTG 3 cut(s) 118, 248, 658
TspRI CASTG 3 cut(s) 118, 248, 658
VpaK11BI GGWCC 3 cut(s) 288, 478, 710
XapI RAATTY 1 cut(s) 597
XhoI CTCGAG 2 cut(s) 8, 395
XmaJI CCTAGG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 348
ZraI GACGTC 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.