Rh5DG245800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0008112
Physical Location & Seq
Forward (+)
28083949 .. 28085471
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG245800.1

Sequence Viewer

Length: 819 bp
ATGGTGCTCGAGGTTTCAGTCGAGGAGATCGCAGAGCCGGAGGTCATCCGCGTCTACACCGAGTACCTCCACGACCTCTTCACCGTCCACGTGGACTCCAAGCGCATCCTCACCGTCCTCACCGACAACGAAGCCGTCGCCTCCAAGTGGCTCAAGGAGGTCCTCCGCTCCAAAGCCTCCAACACCAAGCCTCCTCTCCCTGGCGCCCCCACCACCTTCAGCCCCGACTCCATCTTCGTCGGCCTCGTTGCCGAGCAACACTCCCCCTTCTACGGCTCCCGCCCCTACGACGAAACCGACCAGACCTTCGACCTCCTCACCCTCTGCGTCGGCTCTCACTGCCTCATGTACGAGCTGCCTGGCCCCGAGTACCGCCCCTGGTGGTCCGACGAGCTTCCCTACGACGACGCGCCCAAGGTCTTCAAGGCCTTCTTCCAAAACCCTAGGGTCGTCGTCCTCGGCACCAACATGGCCAAGGTCGCCAAGAGGCTCGATGCCAGGCACGGCATCCAGATCAAGAACGCCGTGGATCTGAACCAGCTCGCCGTCAAGGGGATGCAGAGGCACGATCTGGACCTGGCTCGCTACGACTTTGAGAAGCTGACCATGACGGTGCTCGGGAAGGCGTTTGACGTCATCAAGCCGGAGAGGGTTTACTGGTATCGGAGGCAGGCGTACTGCAACCGCTGGGGAGTTTTTTACCGCGAAGACTACGATAGGCTGACGAGCGAGAAGGTCATGTTCACCACTGTGGATGCTTATCTGCGCCTCATCATGTGCTTCAAGCTTCTGGAGGCCATGGATGGTCCTGAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.52

Weight (kDa)

5.75

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 636
AccB1I GGYRCC 2 cut(s) 203, 461
AccBSI CCGCTC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 54
AccII CGCG 3 cut(s) 51, 410, 705
AciI CCGC 6 cut(s) 49, 166, 280, 373, 685, 703
AclWI GGATC 1 cut(s) 537
AcoI YGGCCR 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 202
AcvI CACGTG 1 cut(s) 91
AcyI GRCGYC 2 cut(s) 204, 633
AfaI GTAC 4 cut(s) 65, 350, 371, 677
AfiI CCNNNNNNNGG 4 cut(s) 147, 200, 272, 552
AgsI TTSAA 2 cut(s) 424, 784
AjnI CCWGG 5 cut(s) 199, 358, 377, 497, 576
AleI CACNNNNGTG 1 cut(s) 749
AluBI AGCT 5 cut(s) 355, 394, 541, 601, 787
AluI AGCT 5 cut(s) 355, 394, 541, 601, 787
Alw21I GWGCWC 2 cut(s) 9, 618
AlwI GGATC 1 cut(s) 537
Ama87I CYCGRG 3 cut(s) 8, 365, 617
AoxI GGCC 5 cut(s) 241, 361, 426, 471, 795
ApeKI GCWGC 1 cut(s) 355
ArsI GACNNNNNNTTYG 4 cut(s) 218, 250, 290, 322
AspA2I CCTAGG 1 cut(s) 443
AspLEI GCGC 4 cut(s) 105, 206, 412, 768
AspS9I GGNCC 5 cut(s) 160, 362, 384, 574, 806
AsuHPI GGTGA 5 cut(s) 73, 103, 112, 310, 736
AvaI CYCGRG 3 cut(s) 8, 365, 617
AvaII GGWCC 4 cut(s) 160, 384, 574, 806
AvrII CCTAGG 1 cut(s) 443
BalI TGGCCA 1 cut(s) 473
BanI GGYRCC 2 cut(s) 203, 461
BbrPI CACGTG 1 cut(s) 91
BbsI GAAGAC 2 cut(s) 412, 714
Bbv12I GWGCWC 2 cut(s) 9, 618
BbvI GCAGC 1 cut(s) 342
BccI CCATC 2 cut(s) 239, 797
BceAI ACGGC 5 cut(s) 119, 289, 509, 520, 530
BciT130I CCWGG 5 cut(s) 201, 360, 379, 499, 578
BfaI CTAG 1 cut(s) 444
BfoI RGCGCY 1 cut(s) 207
BisI GCNGC 1 cut(s) 356
BlnI CCTAGG 1 cut(s) 443
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 5 cut(s) 201, 360, 379, 499, 578
Bme18I GGWCC 4 cut(s) 160, 384, 574, 806
BmeT110I CYCGRG 3 cut(s) 8, 365, 617
BmgT120I GGNCC 5 cut(s) 160, 362, 384, 574, 806
BmiI GGNNCC 4 cut(s) 205, 277, 364, 463
BmrFI CCNGG 5 cut(s) 201, 360, 379, 499, 578
BmsI GCATC 5 cut(s) 114, 484, 516, 546, 745
BpiI GAAGAC 2 cut(s) 412, 714
BplI GAGNNNNNCTC 2 cut(s) 245, 277
BpmI CTGGAG 1 cut(s) 812
BpuEI CTTGAG 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 759
BsaHI GRCGYC 2 cut(s) 204, 633
BsaJI CCNNGG 8 cut(s) 199, 377, 414, 443, 457, 474, 525, 798
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 175, 205
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 200, 272, 552
Bse1I ACTGG 1 cut(s) 662
Bse8I GATNNNNATC 1 cut(s) 759
BseBI CCWGG 5 cut(s) 201, 360, 379, 499, 578
BseDI CCNNGG 8 cut(s) 199, 377, 414, 443, 457, 474, 525, 798
BseGI GGATG 6 cut(s) 45, 105, 507, 561, 760, 808
BseJI GATNNNNATC 1 cut(s) 759
BseLI CCNNNNNNNGG 4 cut(s) 147, 200, 272, 552
BseMII CTCAG 1 cut(s) 801
BseNI ACTGG 1 cut(s) 662
BseRI GAGGAG 3 cut(s) 38, 183, 305
BseXI GCAGC 1 cut(s) 342
BseYI CCCAGC 1 cut(s) 687
Bsh1236I CGCG 3 cut(s) 51, 410, 705
BshFI GGCC 5 cut(s) 243, 363, 428, 473, 797
BshNI GGYRCC 2 cut(s) 203, 461
BsiHKAI GWGCWC 2 cut(s) 9, 618
BsiHKCI CYCGRG 3 cut(s) 8, 365, 617
BsiSI CCGG 2 cut(s) 38, 644
BslI CCNNNNNNNGG 4 cut(s) 147, 200, 272, 552
BsnI GGCC 5 cut(s) 243, 363, 428, 473, 797
BsoBI CYCGRG 3 cut(s) 8, 365, 617
Bsp1286I GDGCHC 2 cut(s) 9, 618
Bsp143I GATC 4 cut(s) 27, 513, 529, 568
Bsp19I CCATGG 1 cut(s) 798
BspACI CCGC 6 cut(s) 49, 166, 280, 373, 685, 703
BspANI GGCC 5 cut(s) 243, 363, 428, 473, 797
BspCNI CTCAG 1 cut(s) 802
BspFNI CGCG 3 cut(s) 51, 410, 705
BspLI GGNNCC 4 cut(s) 205, 277, 364, 463
BspPI GGATC 1 cut(s) 537
BspT107I GGYRCC 2 cut(s) 203, 461
BsrBI CCGCTC 1 cut(s) 168
BsrI ACTGG 1 cut(s) 662
BssECI CCNNGG 8 cut(s) 199, 377, 414, 443, 457, 474, 525, 798
BssMI GATC 4 cut(s) 27, 513, 529, 568
BssNI GRCGYC 2 cut(s) 204, 633
BssT1I CCWWGG 4 cut(s) 414, 443, 474, 798
Bst2UI CCWGG 5 cut(s) 201, 360, 379, 499, 578
Bst4CI ACNGT 4 cut(s) 85, 115, 613, 751
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 2 cut(s) 204, 633
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 543, 583, 672
BstDEI CTNAG 1 cut(s) 810
BstDSI CCRYGG 2 cut(s) 525, 798
BstF5I GGATG 6 cut(s) 45, 105, 507, 561, 760, 808
BstFNI CGCG 3 cut(s) 51, 410, 705
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 4 cut(s) 105, 206, 412, 768
BstKTI GATC 4 cut(s) 30, 516, 532, 571
BstMBI GATC 4 cut(s) 27, 513, 529, 568
BstMWI GCNNNNNNNGC 2 cut(s) 339, 479
BstNI CCWGG 5 cut(s) 201, 360, 379, 499, 578
BstSCI CCNGG 5 cut(s) 199, 358, 377, 497, 576
BstUI CGCG 3 cut(s) 51, 410, 705
BstV1I GCAGC 1 cut(s) 342
BstV2I GAAGAC 2 cut(s) 412, 714
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 5 cut(s) 243, 363, 428, 473, 797
BtgI CCRYGG 2 cut(s) 525, 798
BtsCI GGATG 6 cut(s) 45, 105, 507, 561, 760, 808
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 337, 747
Cac8I GCNNGC 3 cut(s) 543, 583, 672
CfoI GCGC 4 cut(s) 105, 206, 412, 768
Cfr13I GGNCC 5 cut(s) 160, 362, 384, 574, 806
CseI GACGC 3 cut(s) 40, 316, 416
Csp6I GTAC 4 cut(s) 64, 349, 370, 676
CviAII CATG 6 cut(s) 346, 469, 607, 739, 775, 799
CviQI GTAC 4 cut(s) 64, 349, 370, 676
DdeI CTNAG 1 cut(s) 810
DinI GGCGCC 1 cut(s) 205
DpnI GATC 4 cut(s) 29, 515, 531, 570
DpnII GATC 4 cut(s) 27, 513, 529, 568
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco130I CCWWGG 4 cut(s) 414, 443, 474, 798
Eco147I AGGCCT 1 cut(s) 428
Eco47I GGWCC 4 cut(s) 160, 384, 574, 806
Eco57I CTGAAG 1 cut(s) 202
Eco72I CACGTG 1 cut(s) 91
Eco88I CYCGRG 3 cut(s) 8, 365, 617
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 5 cut(s) 199, 358, 377, 497, 576
EcoT14I CCWWGG 4 cut(s) 414, 443, 474, 798
EgeI GGCGCC 1 cut(s) 205
EheI GGCGCC 1 cut(s) 205
ErhI CCWWGG 4 cut(s) 414, 443, 474, 798
FaeI CATG 6 cut(s) 349, 472, 610, 742, 778, 802
FaiI YATR 6 cut(s) 347, 470, 608, 740, 776, 800
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FatI CATG 6 cut(s) 345, 468, 606, 738, 774, 798
FauI CCCGC 1 cut(s) 287
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 6 cut(s) 32, 92, 494, 568, 767, 815
Fsp4HI GCNGC 1 cut(s) 356
FspBI CTAG 1 cut(s) 444
GlaI GCGC 4 cut(s) 104, 205, 411, 767
GluI GCNGC 1 cut(s) 356
GsaI CCCAGC 1 cut(s) 691
GsuI CTGGAG 1 cut(s) 812
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 5 cut(s) 243, 363, 428, 473, 797
HapII CCGG 2 cut(s) 38, 644
HgaI GACGC 3 cut(s) 40, 316, 416
HhaI GCGC 4 cut(s) 105, 206, 412, 768
Hin1I GRCGYC 2 cut(s) 204, 633
Hin1II CATG 6 cut(s) 349, 472, 610, 742, 778, 802
Hin6I GCGC 4 cut(s) 103, 204, 410, 766
HinP1I GCGC 4 cut(s) 103, 204, 410, 766
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 2 cut(s) 95, 227
HpaII CCGG 2 cut(s) 38, 644
HphI GGTGA 5 cut(s) 73, 103, 112, 310, 736
Hpy166II GTNNAC 5 cut(s) 55, 88, 94, 655, 744
Hpy188I TCNGA 3 cut(s) 388, 534, 666
Hpy188III TCNNGA 6 cut(s) 511, 517, 572, 619, 791, 809
Hpy8I GTNNAC 5 cut(s) 55, 88, 94, 655, 744
Hpy99I CGWCG 8 cut(s) 140, 242, 293, 332, 392, 407, 410, 455
HpyAV CCTTC 6 cut(s) 226, 277, 316, 439, 616, 727
HpyCH4III ACNGT 4 cut(s) 85, 115, 613, 751
HpyCH4IV ACGT 2 cut(s) 90, 633
HpyCH4V TGCA 2 cut(s) 559, 681
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 479
HpyF3I CTNAG 1 cut(s) 810
HpySE526I ACGT 2 cut(s) 90, 633
Hsp92I GRCGYC 2 cut(s) 204, 633
Hsp92II CATG 6 cut(s) 349, 472, 610, 742, 778, 802
HspAI GCGC 4 cut(s) 103, 204, 410, 766
KasI GGCGCC 1 cut(s) 203
Kzo9I GATC 4 cut(s) 27, 513, 529, 568
LmnI GCTCC 2 cut(s) 173, 281
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 5 cut(s) 114, 484, 516, 546, 745
MaeI CTAG 1 cut(s) 444
MaeII ACGT 2 cut(s) 90, 633
MalI GATC 4 cut(s) 29, 515, 531, 570
MbiI CCGCTC 1 cut(s) 168
MboI GATC 4 cut(s) 27, 513, 529, 568
MboII GAAGA 5 cut(s) 70, 226, 412, 424, 719
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 2 cut(s) 9, 618
MlsI TGGCCA 1 cut(s) 473
MluNI TGGCCA 1 cut(s) 473
Mly113I GGCGCC 1 cut(s) 204
MlyI GAGTC 2 cut(s) 89, 221
MmeI TCCRAC 2 cut(s) 204, 411
Mox20I TGGCCA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 473
MslI CAYNNNNRTG 3 cut(s) 467, 611, 749
Msp20I TGGCCA 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 687
MspI CCGG 2 cut(s) 38, 644
MspR9I CCNGG 5 cut(s) 201, 360, 379, 499, 578
MvaI CCWGG 5 cut(s) 201, 360, 379, 499, 578
MvnI CGCG 3 cut(s) 51, 410, 705
MwoI GCNNNNNNNGC 2 cut(s) 339, 479
NarI GGCGCC 1 cut(s) 204
NcoI CCATGG 1 cut(s) 798
NdeII GATC 4 cut(s) 27, 513, 529, 568
NlaIII CATG 6 cut(s) 349, 472, 610, 742, 778, 802
NlaIV GGNNCC 4 cut(s) 205, 277, 364, 463
NmeAIII GCCGAG 2 cut(s) 277, 438
OliI CACNNNNGTG 1 cut(s) 749
PaeR7I CTCGAG 1 cut(s) 8
PceI AGGCCT 1 cut(s) 428
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 294
PkrI GCNGC 1 cut(s) 357
PleI GAGTC 2 cut(s) 89, 221
PluTI GGCGCC 1 cut(s) 207
PmaCI CACGTG 1 cut(s) 91
PmlI CACGTG 1 cut(s) 91
PpsI GAGTC 2 cut(s) 89, 221
Ppu21I YACGTR 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 5 cut(s) 199, 358, 377, 497, 576
PspCI CACGTG 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 687
PspGI CCWGG 5 cut(s) 199, 358, 377, 497, 576
PspN4I GGNNCC 4 cut(s) 205, 277, 364, 463
PspPI GGNCC 5 cut(s) 160, 362, 384, 574, 806
PspPPI RGGWCCY 1 cut(s) 160
PspXI VCTCGAGB 1 cut(s) 8
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 4 cut(s) 65, 350, 371, 677
RsaNI GTAC 4 cut(s) 64, 349, 370, 676
RseI CAYNNNNRTG 3 cut(s) 467, 611, 749
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 4 cut(s) 27, 513, 529, 568
Sau96I GGNCC 5 cut(s) 160, 362, 384, 574, 806
SchI GAGTC 2 cut(s) 89, 221
ScrFI CCNGG 5 cut(s) 201, 360, 379, 499, 578
SduI GDGCHC 2 cut(s) 9, 618
SfaNI GCATC 5 cut(s) 114, 484, 516, 546, 745
SfoI GGCGCC 1 cut(s) 205
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 4 cut(s) 160, 384, 574, 806
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 3 cut(s) 467, 611, 749
SmlI CTYRAG 2 cut(s) 8, 152
SmoI CTYRAG 2 cut(s) 8, 152
SseBI AGGCCT 1 cut(s) 428
SsiI CCGC 6 cut(s) 49, 166, 280, 373, 685, 703
SspDI GGCGCC 1 cut(s) 203
SspMI CTAG 1 cut(s) 444
StuI AGGCCT 1 cut(s) 428
StyD4I CCNGG 5 cut(s) 199, 358, 377, 497, 576
StyI CCWWGG 4 cut(s) 414, 443, 474, 798
TaaI ACNGT 4 cut(s) 85, 115, 613, 751
TaiI ACGT 2 cut(s) 93, 636
TaqI TCGA 4 cut(s) 9, 21, 309, 492
TscAI CASTG 2 cut(s) 344, 754
TseI GCWGC 1 cut(s) 355
TspRI CASTG 2 cut(s) 344, 754
VpaK11BI GGWCC 4 cut(s) 160, 384, 574, 806
XhoI CTCGAG 1 cut(s) 8
XmaJI CCTAGG 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 444
ZraI GACGTC 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.