Rroxscaffold_1G00045880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008112
Physical Location & Seq
Reverse (-)
65040531 .. 65041767
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045880.1

Sequence Viewer

Length: 843 bp
ATGGTGCTGGAAATCGCCGTCAAGTTCATGAAGCCGGAGCCTCGAACCGCCGTCGAACTCGACGTAGTCCCAAAGCTCTTCCACAGACGCGCCGTCCACGACCTCTACACCGTCCACGTGGACTCCACGCAGATCCTCACTGTCTCCACCCGCGACGACAACATCGCCGGCAAATGGCTCACCGAGGTCCTCAAGTCCACAACCTCCAACACCAAGCCGCTGAACCCTAACCCCGAGTTCAGGCCCGACTCCATCTTCGTCGGCTTAATCGCCGACATGGACTACGAAGTGTACGGCCCCGGCGGCCTCCAGGACCACCCCTACGAGCTCCTCACCGTTTGCGTCGGGTCCCACTGCCTCATGTACCGCCTCCCGTGGCCGGACTACCCCGGGACGCCGAAGGTCGTCAAGGCCTTCTTTGAGAACCCCAGGGTGGTGGTGCTCGGAAGGGACATGGCTAAGGTGGCGAACAAGCTGAAGAAAACGCACGGGATCGAGATCAGGAACGCCGTCGATCTGAACCAGCTCGCTATCCGAGGGATGAAGAGGGACGATCTGGACCTCGGCCGCTACGATCTGGACCGCCTAGCCATGACCGTGCTGGGGAAGCACTTCGACGTCATCAGGCCGGAGGAGAAGCTCTACGAGTGGTGGACCTACGAAAAAGGCCTCTACGGCCAAGACTCGTACGACGAGCGGCTCTGCGACGAGAAGGTCAAGTTCAGTACTCTTGACACCCATCTCTGCTTGTTGATCGGCACCGCGCTTGCGGAGGCCATTCACGGTGGTCGGTTCTCGGGCGCCACCAAGAAGAAGAAGAAGGCCACCAAAAGGAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.94

Weight (kDa)

8.5

Isoelectric Point (pI)

25.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 713
AatII GACGTC 1 cut(s) 621
AccB1I GGYRCC 2 cut(s) 758, 800
AccBSI CCGCTC 1 cut(s) 697
AccII CGCG 3 cut(s) 90, 153, 764
AclWI GGATC 2 cut(s) 127, 500
AcoI YGGCCR 3 cut(s) 377, 565, 676
AcuI CTGAAG 1 cut(s) 497
AcvI CACGTG 1 cut(s) 118
AcyI GRCGYC 3 cut(s) 395, 618, 801
AfaI GTAC 4 cut(s) 293, 365, 689, 727
AfiI CCNNNNNNNGG 7 cut(s) 174, 240, 379, 433, 603, 831, 834
AhdI GACNNNNNGTC 1 cut(s) 92
AjnI CCWGG 2 cut(s) 309, 428
AluBI AGCT 5 cut(s) 76, 328, 475, 526, 640
AluI AGCT 5 cut(s) 76, 328, 475, 526, 640
Alw21I GWGCWC 2 cut(s) 330, 444
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 2 cut(s) 127, 500
Ama87I CYCGRG 3 cut(s) 233, 389, 796
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
Asp700I GAANNNNTTC 1 cut(s) 611
AspLEI GCGC 3 cut(s) 92, 766, 803
AspS9I GGNCC 8 cut(s) 187, 243, 296, 313, 348, 559, 580, 654
AsuC2I CCSGG 3 cut(s) 300, 390, 391
AsuHPI GGTGA 2 cut(s) 172, 325
AvaI CYCGRG 3 cut(s) 233, 389, 796
AvaII GGWCC 6 cut(s) 187, 313, 348, 559, 580, 654
BanI GGYRCC 2 cut(s) 758, 800
BanII GRGCYC 1 cut(s) 330
BbrPI CACGTG 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 330, 444
BccI CCATC 2 cut(s) 260, 747
BceAI ACGGC 6 cut(s) 2, 35, 77, 310, 494, 691
BciT130I CCWGG 2 cut(s) 311, 430
BcnI CCSGG 3 cut(s) 300, 390, 391
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 587
BfoI RGCGCY 1 cut(s) 804
BglI GCCNNNNNGGC 2 cut(s) 303, 675
BisI GCNGC 4 cut(s) 218, 304, 568, 698
BlsI GCNGC 4 cut(s) 219, 305, 569, 699
BmcAI AGTACT 1 cut(s) 727
Bme1390I CCNGG 5 cut(s) 300, 311, 390, 391, 430
Bme18I GGWCC 6 cut(s) 187, 313, 348, 559, 580, 654
BmeRI GACNNNNNGTC 1 cut(s) 92
BmeT110I CYCGRG 3 cut(s) 233, 389, 796
BmgT120I GGNCC 8 cut(s) 187, 243, 296, 313, 348, 559, 580, 654
BmiI GGNNCC 6 cut(s) 39, 298, 349, 350, 760, 802
BmrFI CCNGG 5 cut(s) 300, 311, 390, 391, 430
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 3 cut(s) 300, 390, 391
BsaAI YACGTR 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 497
BsaHI GRCGYC 3 cut(s) 395, 618, 801
BsaJI CCNNGG 9 cut(s) 183, 298, 374, 388, 389, 428, 429, 535, 562
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 7 cut(s) 174, 240, 379, 433, 603, 831, 834
Bse118I RCCGGY 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 497
BseBI CCWGG 2 cut(s) 311, 430
BseDI CCNNGG 9 cut(s) 183, 298, 374, 388, 389, 428, 429, 535, 562
BseGI GGATG 1 cut(s) 546
BseJI GATNNNNATC 1 cut(s) 497
BseLI CCNNNNNNNGG 7 cut(s) 174, 240, 379, 433, 603, 831, 834
BseRI GAGGAG 2 cut(s) 320, 647
BseX3I CGGCCG 1 cut(s) 565
BseYI CCCAGC 1 cut(s) 601
Bsh1236I CGCG 3 cut(s) 90, 153, 764
Bsh1285I CGRYCG 1 cut(s) 568
BshNI GGYRCC 2 cut(s) 758, 800
BsiEI CGRYCG 1 cut(s) 568
BsiHKAI GWGCWC 2 cut(s) 330, 444
BsiHKCI CYCGRG 3 cut(s) 233, 389, 796
BsiSI CCGG 6 cut(s) 35, 168, 300, 380, 390, 629
BsiWI CGTACG 1 cut(s) 687
BslFI GGGAC 5 cut(s) 53, 334, 406, 464, 563
BslI CCNNNNNNNGG 7 cut(s) 174, 240, 379, 433, 603, 831, 834
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 5 cut(s) 53, 334, 406, 464, 563
BsoBI CYCGRG 3 cut(s) 233, 389, 796
Bsp1286I GDGCHC 2 cut(s) 330, 444
Bsp143I GATC 7 cut(s) 132, 492, 498, 514, 553, 574, 753
BspFNI CGCG 3 cut(s) 90, 153, 764
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 6 cut(s) 39, 298, 349, 350, 760, 802
BspPI GGATC 2 cut(s) 127, 500
BspQI GCTCTTC 1 cut(s) 83
BspT107I GGYRCC 2 cut(s) 758, 800
BsrBI CCGCTC 1 cut(s) 697
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 9 cut(s) 183, 298, 374, 388, 389, 428, 429, 535, 562
BssMI GATC 7 cut(s) 132, 492, 498, 514, 553, 574, 753
BssNI GRCGYC 3 cut(s) 395, 618, 801
Bst2UI CCWGG 2 cut(s) 311, 430
Bst4CI ACNGT 5 cut(s) 112, 142, 337, 598, 785
Bst6I CTCTTC 2 cut(s) 83, 539
BstACI GRCGYC 3 cut(s) 395, 618, 801
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 3 cut(s) 169, 528, 768
BstDEI CTNAG 1 cut(s) 459
BstDSI CCRYGG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 3 cut(s) 90, 153, 764
BstH2I RGCGCY 1 cut(s) 804
BstHHI GCGC 3 cut(s) 92, 766, 803
BstKTI GATC 7 cut(s) 135, 495, 501, 517, 556, 577, 756
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 7 cut(s) 132, 492, 498, 514, 553, 574, 753
BstMCI CGRYCG 1 cut(s) 568
BstMWI GCNNNNNNNGC 4 cut(s) 303, 464, 607, 675
BstNI CCWGG 2 cut(s) 311, 430
BstSCI CCNGG 5 cut(s) 298, 309, 388, 389, 428
BstUI CGCG 3 cut(s) 90, 153, 764
BstX2I RGATCY 1 cut(s) 132
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 1 cut(s) 132
BstZI CGGCCG 1 cut(s) 565
BtgI CCRYGG 1 cut(s) 374
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 546
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 138, 352
Cac8I GCNNGC 3 cut(s) 169, 528, 768
CciI TCATGA 1 cut(s) 27
CfoI GCGC 3 cut(s) 92, 766, 803
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 8 cut(s) 187, 243, 296, 313, 348, 559, 580, 654
Cfr9I CCCGGG 1 cut(s) 389
CseI GACGC 3 cut(s) 96, 331, 403
Csp6I GTAC 4 cut(s) 292, 364, 688, 726
CviAII CATG 5 cut(s) 28, 277, 361, 454, 592
CviQI GTAC 4 cut(s) 292, 364, 688, 726
DdeI CTNAG 1 cut(s) 459
DinI GGCGCC 1 cut(s) 802
DpnI GATC 7 cut(s) 134, 494, 500, 516, 555, 576, 755
DpnII GATC 7 cut(s) 132, 492, 498, 514, 553, 574, 753
DrdI GACNNNNNNGTC 1 cut(s) 713
DriI GACNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 713
EaeI YGGCCR 3 cut(s) 377, 565, 676
EagI CGGCCG 1 cut(s) 565
Eam1104I CTCTTC 2 cut(s) 83, 539
Eam1105I GACNNNNNGTC 1 cut(s) 92
EarI CTCTTC 2 cut(s) 83, 539
Ecl136II GAGCTC 1 cut(s) 328
EclXI CGGCCG 1 cut(s) 565
Eco147I AGGCCT 2 cut(s) 413, 669
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 6 cut(s) 187, 313, 348, 559, 580, 654
Eco52I CGGCCG 1 cut(s) 565
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 497
Eco72I CACGTG 1 cut(s) 118
Eco88I CYCGRG 3 cut(s) 233, 389, 796
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 2 cut(s) 187, 348
EcoRII CCWGG 2 cut(s) 309, 428
EcoT38I GRGCYC 1 cut(s) 330
EgeI GGCGCC 1 cut(s) 802
EheI GGCGCC 1 cut(s) 802
FaeI CATG 5 cut(s) 31, 280, 364, 457, 595
FaiI YATR 5 cut(s) 29, 278, 362, 455, 593
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 5 cut(s) 53, 334, 406, 464, 563
FatI CATG 5 cut(s) 27, 276, 360, 453, 591
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 4 cut(s) 218, 304, 568, 698
FokI GGATG 1 cut(s) 553
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 4 cut(s) 218, 304, 568, 698
FspBI CTAG 1 cut(s) 587
GlaI GCGC 3 cut(s) 91, 765, 802
GluI GCNGC 4 cut(s) 218, 304, 568, 698
GsaI CCCAGC 1 cut(s) 605
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 804
HapII CCGG 6 cut(s) 35, 168, 300, 380, 390, 629
HgaI GACGC 3 cut(s) 96, 331, 403
HhaI GCGC 3 cut(s) 92, 766, 803
Hin1I GRCGYC 3 cut(s) 395, 618, 801
Hin1II CATG 5 cut(s) 31, 280, 364, 457, 595
Hin6I GCGC 3 cut(s) 90, 764, 801
HinP1I GCGC 3 cut(s) 90, 764, 801
HinfI GANTC 3 cut(s) 122, 248, 683
HpaII CCGG 6 cut(s) 35, 168, 300, 380, 390, 629
HphI GGTGA 2 cut(s) 172, 325
Hpy166II GTNNAC 6 cut(s) 97, 115, 121, 198, 292, 654
Hpy188I TCNGA 3 cut(s) 446, 519, 536
Hpy188III TCNNGA 6 cut(s) 28, 496, 502, 557, 578, 731
Hpy8I GTNNAC 6 cut(s) 97, 115, 121, 198, 292, 654
Hpy99I CGWCG 9 cut(s) 56, 65, 158, 263, 347, 515, 620, 695, 710
HpyAV CCTTC 5 cut(s) 394, 424, 441, 706, 814
HpyCH4III ACNGT 5 cut(s) 112, 142, 337, 598, 785
HpyCH4IV ACGT 3 cut(s) 63, 117, 618
HpyF10VI GCNNNNNNNGC 4 cut(s) 303, 464, 607, 675
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 3 cut(s) 63, 117, 618
Hsp92I GRCGYC 3 cut(s) 395, 618, 801
Hsp92II CATG 5 cut(s) 31, 280, 364, 457, 595
HspAI GCGC 3 cut(s) 90, 764, 801
KasI GGCGCC 1 cut(s) 800
KflI GGGWCCC 1 cut(s) 348
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Kzo9I GATC 7 cut(s) 132, 492, 498, 514, 553, 574, 753
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 2 cut(s) 37, 333
MaeI CTAG 1 cut(s) 587
MaeII ACGT 3 cut(s) 63, 117, 618
MalI GATC 7 cut(s) 134, 494, 500, 516, 555, 576, 755
MbiI CCGCTC 1 cut(s) 697
MboI GATC 7 cut(s) 132, 492, 498, 514, 553, 574, 753
MboII GAAGA 7 cut(s) 70, 247, 490, 556, 823, 826, 829
MflI RGATCY 1 cut(s) 132
MhlI GDGCHC 2 cut(s) 330, 444
Mly113I GGCGCC 1 cut(s) 801
MlyI GAGTC 3 cut(s) 116, 242, 677
MmeI TCCRAC 1 cut(s) 231
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 6 cut(s) 35, 168, 300, 380, 390, 629
MspR9I CCNGG 5 cut(s) 300, 311, 390, 391, 430
MvaI CCWGG 2 cut(s) 311, 430
MvnI CGCG 3 cut(s) 90, 153, 764
MwoI GCNNNNNNNGC 4 cut(s) 303, 464, 607, 675
NaeI GCCGGC 1 cut(s) 169
NarI GGCGCC 1 cut(s) 801
NciI CCSGG 3 cut(s) 300, 390, 391
NdeII GATC 7 cut(s) 132, 492, 498, 514, 553, 574, 753
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 5 cut(s) 31, 280, 364, 457, 595
NlaIV GGNNCC 6 cut(s) 39, 298, 349, 350, 760, 802
NmeAIII GCCGAG 1 cut(s) 543
PagI TCATGA 1 cut(s) 27
PasI CCCWGGG 1 cut(s) 429
PceI AGGCCT 2 cut(s) 413, 669
PciSI GCTCTTC 1 cut(s) 83
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 570
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 611
Pfl23II CGTACG 1 cut(s) 687
PflFI GACNNNGTC 1 cut(s) 65
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 4 cut(s) 219, 305, 569, 699
PleI GAGTC 3 cut(s) 116, 242, 677
PluTI GGCGCC 1 cut(s) 804
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 3 cut(s) 116, 242, 677
Ppu21I YACGTR 1 cut(s) 118
PpuMI RGGWCCY 2 cut(s) 187, 348
Psp124BI GAGCTC 1 cut(s) 330
Psp5II RGGWCCY 2 cut(s) 187, 348
Psp6I CCWGG 2 cut(s) 309, 428
PspCI CACGTG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 601
PspGI CCWGG 2 cut(s) 309, 428
PspLI CGTACG 1 cut(s) 687
PspN4I GGNNCC 6 cut(s) 39, 298, 349, 350, 760, 802
PspPI GGNCC 8 cut(s) 187, 243, 296, 313, 348, 559, 580, 654
PspPPI RGGWCCY 2 cut(s) 187, 348
PsuI RGATCY 1 cut(s) 132
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 4 cut(s) 293, 365, 689, 727
RsaNI GTAC 4 cut(s) 292, 364, 688, 726
RseI CAYNNNNRTG 1 cut(s) 596
SacI GAGCTC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 4 cut(s) 218, 304, 568, 698
Sau3AI GATC 7 cut(s) 132, 492, 498, 514, 553, 574, 753
Sau96I GGNCC 8 cut(s) 187, 243, 296, 313, 348, 559, 580, 654
ScaI AGTACT 1 cut(s) 727
SchI GAGTC 3 cut(s) 116, 242, 677
ScrFI CCNGG 5 cut(s) 300, 311, 390, 391, 430
SduI GDGCHC 2 cut(s) 330, 444
SfiI GGCCNNNNNGGCC 2 cut(s) 303, 675
SfoI GGCGCC 1 cut(s) 802
SinI GGWCC 6 cut(s) 187, 313, 348, 559, 580, 654
SmaI CCCGGG 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SseBI AGGCCT 2 cut(s) 413, 669
SspDI GGCGCC 1 cut(s) 800
SspMI CTAG 1 cut(s) 587
SstI GAGCTC 1 cut(s) 330
StuI AGGCCT 2 cut(s) 413, 669
StyD4I CCNGG 5 cut(s) 298, 309, 388, 389, 428
TaaI ACNGT 5 cut(s) 112, 142, 337, 598, 785
TaiI ACGT 3 cut(s) 66, 120, 621
TaqI TCGA 6 cut(s) 43, 54, 60, 495, 513, 615
TatI WGTACW 1 cut(s) 725
TauI GCSGC 4 cut(s) 220, 306, 570, 700
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 2 cut(s) 145, 359
TspDTI ATGAA 3 cut(s) 16, 44, 557
TspMI CCCGGG 1 cut(s) 389
TspRI CASTG 2 cut(s) 145, 359
Tth111I GACNNNGTC 1 cut(s) 65
VpaK11BI GGWCC 6 cut(s) 187, 313, 348, 559, 580, 654
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XmaI CCCGGG 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 1 cut(s) 587
ZraI GACGTC 1 cut(s) 619
ZrmI AGTACT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.