RLG00000033545

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008112
Physical Location & Seq
Forward (+)
28779120 .. 28779968
849 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033545

Sequence Viewer

Length: 849 bp
ATGGTGCTGGAAATCGCAGTGATATTCATGAAGCCTGAGCAGCGAACAGCCGTCGAATTCGACGTAGTCCCAAAGCTCTACCACAGACGAGCCGCCGTCCACGACCTCTACACCGTCCACGTGGACTCCACGCAGATCCTCACCGTCGCCACCCGTGACGACAACATCGCGGGAAAATGGCTCACCGAGGTCCTCAAGTCCACCGCCTCCAACACCAAGCCGCTGAACCCTAACCCTGAGTTCAGGCCCGACTCCATCTTCGTCGGCCTAATCGCCGACATGGACTACGAAGTGTACGGCCCCGGCGGCCTCAAGGACCACCCCTACGAGCTCCTCACCGTCTGCGTCGGGTCCCACTGCCTCATGTACCACCTCCCGTGGCCGGACTACCCCGGGACCCCGAAGGTCGTCAAGGCCTTCTTTGAGAACCCCAGGGTGGTGGTGCTTGGAAGGGACATGGCTAAGGTGGCGAACAAGCTGAAGAAAACGCACGGGATCGAGATCAGGAACGCCGTCGATCTGAACGAGCTCGCGATCCGAGGGATGAAGAGGGACGATCTGGACCTCGGCCGCTACGATCTGGACCGGCTCGCCATGACGGTGCTGGGGAAGCACTTCGACGTCCTCAGGCCGGAGGAGAAGCTCTACGAGTGGTGGACCTACGAAAAAGGCCTCTACAGCCAAGACTCGTACGACGAGCGGCTCTGCGACGAGAAGGTCAAGTTCAGTACTCTTGACACCTATCTCGGCTTGTTGATCGGCGCCGCGCTTGTGGAGGCCATTCACGGTGCTCGGTTCTCCGGAGCCACGAAGAAGAAGAAGAAGAAGGCCACCAAAAGGAGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

32.1

Weight (kDa)

8.24

Isoelectric Point (pI)

26.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 716
AatII GACGTC 1 cut(s) 624
AccB1I GGYRCC 1 cut(s) 761
AccBSI CCGCTC 1 cut(s) 700
AccII CGCG 3 cut(s) 170, 533, 767
AccIII TCCGGA 1 cut(s) 800
AciI CCGC 8 cut(s) 93, 170, 204, 221, 306, 571, 700, 765
AclWI GGATC 3 cut(s) 130, 503, 529
AcoI YGGCCR 2 cut(s) 380, 568
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 500
AcvI CACGTG 1 cut(s) 121
AcyI GRCGYC 2 cut(s) 621, 762
AfaI GTAC 4 cut(s) 296, 368, 692, 730
AfiI CCNNNNNNNGG 4 cut(s) 382, 436, 631, 837
AjnI CCWGG 1 cut(s) 431
AluBI AGCT 5 cut(s) 76, 331, 478, 529, 643
AluI AGCT 5 cut(s) 76, 331, 478, 529, 643
Alw21I GWGCWC 3 cut(s) 333, 531, 793
AlwI GGATC 3 cut(s) 130, 503, 529
Ama87I CYCGRG 1 cut(s) 392
Aor13HI TCCGGA 1 cut(s) 800
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
Asp700I GAANNNNTTC 1 cut(s) 614
AspLEI GCGC 2 cut(s) 764, 769
AspS9I GGNCC 9 cut(s) 190, 246, 299, 316, 351, 396, 562, 583, 657
AsuC2I CCSGG 3 cut(s) 303, 393, 394
AsuHPI GGTGA 3 cut(s) 133, 175, 328
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 7 cut(s) 190, 316, 351, 396, 562, 583, 657
AxyI CCTNAGG 1 cut(s) 626
BanI GGYRCC 1 cut(s) 761
BanII GRGCYC 2 cut(s) 333, 531
BbrPI CACGTG 1 cut(s) 121
Bbv12I GWGCWC 3 cut(s) 333, 531, 793
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 263
BceAI ACGGC 4 cut(s) 35, 80, 313, 497
BciT130I CCWGG 1 cut(s) 433
BcnI CCSGG 3 cut(s) 303, 393, 394
BfmI CTRYAG 1 cut(s) 676
BfoI RGCGCY 1 cut(s) 765
BglI GCCNNNNNGGC 1 cut(s) 306
BisI GCNGC 7 cut(s) 41, 93, 221, 307, 571, 701, 765
BlsI GCNGC 7 cut(s) 42, 94, 222, 308, 572, 702, 766
BmcAI AGTACT 1 cut(s) 730
Bme1390I CCNGG 4 cut(s) 303, 393, 394, 433
Bme18I GGWCC 7 cut(s) 190, 316, 351, 396, 562, 583, 657
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 9 cut(s) 190, 246, 299, 316, 351, 396, 562, 583, 657
BmiI GGNNCC 8 cut(s) 301, 352, 353, 397, 398, 763, 805, 842
BmrFI CCNGG 4 cut(s) 303, 393, 394, 433
Bpu10I CCTNAGC 2 cut(s) 36, 462
BpuEI CTTGAG 2 cut(s) 179, 296
BpuMI CCSGG 3 cut(s) 303, 393, 394
BsaAI YACGTR 1 cut(s) 121
BsaBI GATNNNNATC 1 cut(s) 500
BsaHI GRCGYC 2 cut(s) 621, 762
BsaJI CCNNGG 9 cut(s) 186, 301, 377, 391, 392, 431, 432, 538, 565
BsaWI WCCGGW 1 cut(s) 800
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 4 cut(s) 382, 436, 631, 837
Bse118I RCCGGY 1 cut(s) 585
Bse1I ACTGG 1 cut(s) 844
Bse21I CCTNAGG 1 cut(s) 626
Bse8I GATNNNNATC 1 cut(s) 500
BseAI TCCGGA 1 cut(s) 800
BseBI CCWGG 1 cut(s) 433
BseDI CCNNGG 9 cut(s) 186, 301, 377, 391, 392, 431, 432, 538, 565
BseGI GGATG 1 cut(s) 549
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 4 cut(s) 382, 436, 631, 837
BseMII CTCAG 3 cut(s) 27, 228, 640
BseNI ACTGG 1 cut(s) 844
BseRI GAGGAG 2 cut(s) 323, 650
BseX3I CGGCCG 1 cut(s) 568
BseXI GCAGC 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 604
Bsh1236I CGCG 3 cut(s) 170, 533, 767
Bsh1285I CGRYCG 1 cut(s) 571
BshNI GGYRCC 1 cut(s) 761
BsiEI CGRYCG 1 cut(s) 571
BsiHKAI GWGCWC 3 cut(s) 333, 531, 793
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 6 cut(s) 303, 383, 393, 586, 632, 801
BsiWI CGTACG 1 cut(s) 690
BslFI GGGAC 5 cut(s) 53, 337, 409, 467, 566
BslI CCNNNNNNNGG 4 cut(s) 382, 436, 631, 837
BsmFI GGGAC 5 cut(s) 53, 337, 409, 467, 566
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 3 cut(s) 333, 531, 793
Bsp13I TCCGGA 1 cut(s) 800
Bsp143I GATC 8 cut(s) 135, 495, 501, 517, 534, 556, 577, 756
Bsp68I TCGCGA 1 cut(s) 533
BspACI CCGC 8 cut(s) 93, 170, 204, 221, 306, 571, 700, 765
BspCNI CTCAG 3 cut(s) 28, 229, 639
BspEI TCCGGA 1 cut(s) 800
BspFNI CGCG 3 cut(s) 170, 533, 767
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 8 cut(s) 301, 352, 353, 397, 398, 763, 805, 842
BspPI GGATC 3 cut(s) 130, 503, 529
BspT107I GGYRCC 1 cut(s) 761
BsrBI CCGCTC 1 cut(s) 700
BsrFI RCCGGY 1 cut(s) 585
BsrI ACTGG 1 cut(s) 844
BssAI RCCGGY 1 cut(s) 585
BssECI CCNNGG 9 cut(s) 186, 301, 377, 391, 392, 431, 432, 538, 565
BssMI GATC 8 cut(s) 135, 495, 501, 517, 534, 556, 577, 756
BssNI GRCGYC 2 cut(s) 621, 762
Bst2UI CCWGG 1 cut(s) 433
Bst4CI ACNGT 5 cut(s) 115, 145, 340, 601, 788
Bst6I CTCTTC 1 cut(s) 542
BstACI GRCGYC 2 cut(s) 621, 762
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 531, 591
BstDEI CTNAG 4 cut(s) 36, 237, 462, 626
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 549
BstFNI CGCG 3 cut(s) 170, 533, 767
BstH2I RGCGCY 1 cut(s) 765
BstHHI GCGC 2 cut(s) 764, 769
BstKTI GATC 8 cut(s) 138, 498, 504, 520, 537, 559, 580, 759
BstMBI GATC 8 cut(s) 135, 495, 501, 517, 534, 556, 577, 756
BstMCI CGRYCG 1 cut(s) 571
BstMWI GCNNNNNNNGC 5 cut(s) 40, 306, 467, 610, 678
BstNI CCWGG 1 cut(s) 433
BstSCI CCNGG 4 cut(s) 301, 391, 392, 431
BstSFI CTRYAG 1 cut(s) 676
BstUI CGCG 3 cut(s) 170, 533, 767
BstV1I GCAGC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 1 cut(s) 135
BstZI CGGCCG 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 626
BtgI CCRYGG 1 cut(s) 377
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 549
BtsI GCAGTG 2 cut(s) 24, 355
BtsIMutI CAGTG 2 cut(s) 24, 355
BtuMI TCGCGA 1 cut(s) 533
Cac8I GCNNGC 2 cut(s) 531, 591
CciI TCATGA 1 cut(s) 27
CfoI GCGC 2 cut(s) 764, 769
Cfr10I RCCGGY 1 cut(s) 585
Cfr13I GGNCC 9 cut(s) 190, 246, 299, 316, 351, 396, 562, 583, 657
Cfr9I CCCGGG 1 cut(s) 392
CseI GACGC 1 cut(s) 334
Csp6I GTAC 4 cut(s) 295, 367, 691, 729
CviAII CATG 5 cut(s) 28, 280, 364, 457, 595
CviQI GTAC 4 cut(s) 295, 367, 691, 729
DdeI CTNAG 4 cut(s) 36, 237, 462, 626
DinI GGCGCC 1 cut(s) 763
DpnI GATC 8 cut(s) 137, 497, 503, 519, 536, 558, 579, 758
DpnII GATC 8 cut(s) 135, 495, 501, 517, 534, 556, 577, 756
DrdI GACNNNNNNGTC 1 cut(s) 716
DseDI GACNNNNNNGTC 1 cut(s) 716
EaeI YGGCCR 2 cut(s) 380, 568
EagI CGGCCG 1 cut(s) 568
Eam1104I CTCTTC 1 cut(s) 542
EarI CTCTTC 1 cut(s) 542
Ecl136II GAGCTC 2 cut(s) 331, 529
EclXI CGGCCG 1 cut(s) 568
Eco147I AGGCCT 2 cut(s) 416, 672
Eco24I GRGCYC 2 cut(s) 333, 531
Eco47I GGWCC 7 cut(s) 190, 316, 351, 396, 562, 583, 657
Eco52I CGGCCG 1 cut(s) 568
Eco53kI GAGCTC 2 cut(s) 331, 529
Eco57I CTGAAG 1 cut(s) 500
Eco72I CACGTG 1 cut(s) 121
Eco81I CCTNAGG 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 392
EcoICRI GAGCTC 2 cut(s) 331, 529
EcoO109I RGGNCCY 3 cut(s) 190, 351, 396
EcoRI GAATTC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 431
EcoT38I GRGCYC 2 cut(s) 333, 531
EgeI GGCGCC 1 cut(s) 763
EheI GGCGCC 1 cut(s) 763
FaeI CATG 5 cut(s) 31, 283, 367, 460, 598
FaiI YATR 5 cut(s) 29, 281, 365, 458, 596
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 5 cut(s) 53, 337, 409, 467, 566
FatI CATG 5 cut(s) 27, 279, 363, 456, 594
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 7 cut(s) 41, 93, 221, 307, 571, 701, 765
FokI GGATG 1 cut(s) 556
FriOI GRGCYC 2 cut(s) 333, 531
Fsp4HI GCNGC 7 cut(s) 41, 93, 221, 307, 571, 701, 765
GlaI GCGC 2 cut(s) 763, 768
GluI GCNGC 7 cut(s) 41, 93, 221, 307, 571, 701, 765
GsaI CCCAGC 1 cut(s) 608
HaeII RGCGCY 1 cut(s) 765
HapII CCGG 6 cut(s) 303, 383, 393, 586, 632, 801
HgaI GACGC 1 cut(s) 334
HhaI GCGC 2 cut(s) 764, 769
Hin1I GRCGYC 2 cut(s) 621, 762
Hin1II CATG 5 cut(s) 31, 283, 367, 460, 598
Hin6I GCGC 2 cut(s) 762, 767
HinP1I GCGC 2 cut(s) 762, 767
HinfI GANTC 3 cut(s) 125, 251, 686
HpaII CCGG 6 cut(s) 303, 383, 393, 586, 632, 801
HphI GGTGA 3 cut(s) 133, 175, 328
Hpy166II GTNNAC 6 cut(s) 100, 118, 124, 201, 295, 657
Hpy188I TCNGA 2 cut(s) 522, 539
Hpy188III TCNNGA 8 cut(s) 28, 499, 505, 532, 560, 581, 734, 801
Hpy8I GTNNAC 6 cut(s) 100, 118, 124, 201, 295, 657
Hpy99I CGWCG 9 cut(s) 56, 65, 149, 266, 350, 518, 623, 698, 713
HpyAV CCTTC 5 cut(s) 397, 427, 444, 709, 820
HpyCH4III ACNGT 5 cut(s) 115, 145, 340, 601, 788
HpyCH4IV ACGT 3 cut(s) 63, 120, 621
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 306, 467, 610, 678
HpyF3I CTNAG 4 cut(s) 36, 237, 462, 626
HpySE526I ACGT 3 cut(s) 63, 120, 621
Hsp92I GRCGYC 2 cut(s) 621, 762
Hsp92II CATG 5 cut(s) 31, 283, 367, 460, 598
HspAI GCGC 2 cut(s) 762, 767
KasI GGCGCC 1 cut(s) 761
KflI GGGWCCC 2 cut(s) 351, 396
Kpn2I TCCGGA 1 cut(s) 800
Kzo9I GATC 8 cut(s) 135, 495, 501, 517, 534, 556, 577, 756
LmnI GCTCC 3 cut(s) 336, 803, 840
Lsp1109I GCAGC 1 cut(s) 52
MaeII ACGT 3 cut(s) 63, 120, 621
MaeIII GTNAC 1 cut(s) 155
MalI GATC 8 cut(s) 137, 497, 503, 519, 536, 558, 579, 758
MbiI CCGCTC 1 cut(s) 700
MboI GATC 8 cut(s) 135, 495, 501, 517, 534, 556, 577, 756
MboII GAAGA 8 cut(s) 250, 493, 559, 823, 826, 829, 832, 835
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 3 cut(s) 333, 531, 793
MluCI AATT 1 cut(s) 56
Mly113I GGCGCC 1 cut(s) 762
MlyI GAGTC 3 cut(s) 119, 245, 680
MmeI TCCRAC 1 cut(s) 234
MroI TCCGGA 1 cut(s) 800
MroXI GAANNNNTTC 1 cut(s) 614
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 223
MspI CCGG 6 cut(s) 303, 383, 393, 586, 632, 801
MspR9I CCNGG 4 cut(s) 303, 393, 394, 433
MteI GCGCNGCGC 1 cut(s) 765
MvaI CCWGG 1 cut(s) 433
MvnI CGCG 3 cut(s) 170, 533, 767
MwoI GCNNNNNNNGC 5 cut(s) 40, 306, 467, 610, 678
NarI GGCGCC 1 cut(s) 762
NciI CCSGG 3 cut(s) 303, 393, 394
NdeII GATC 8 cut(s) 135, 495, 501, 517, 534, 556, 577, 756
NlaIII CATG 5 cut(s) 31, 283, 367, 460, 598
NlaIV GGNNCC 8 cut(s) 301, 352, 353, 397, 398, 763, 805, 842
NmeAIII GCCGAG 2 cut(s) 546, 726
NmuCI GTSAC 1 cut(s) 155
NruI TCGCGA 1 cut(s) 533
PagI TCATGA 1 cut(s) 27
PasI CCCWGGG 1 cut(s) 432
PceI AGGCCT 2 cut(s) 416, 672
PcsI WCGNNNNNNNCGW 3 cut(s) 60, 522, 573
PdmI GAANNNNTTC 1 cut(s) 614
Pfl23II CGTACG 1 cut(s) 690
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 7 cut(s) 42, 94, 222, 308, 572, 702, 766
PleI GAGTC 3 cut(s) 119, 245, 680
PluTI GGCGCC 1 cut(s) 765
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
PpsI GAGTC 3 cut(s) 119, 245, 680
Ppu21I YACGTR 1 cut(s) 121
PpuMI RGGWCCY 3 cut(s) 190, 351, 396
Psp124BI GAGCTC 2 cut(s) 333, 531
Psp5II RGGWCCY 3 cut(s) 190, 351, 396
Psp6I CCWGG 1 cut(s) 431
PspCI CACGTG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 604
PspGI CCWGG 1 cut(s) 431
PspLI CGTACG 1 cut(s) 690
PspN4I GGNNCC 8 cut(s) 301, 352, 353, 397, 398, 763, 805, 842
PspPI GGNCC 9 cut(s) 190, 246, 299, 316, 351, 396, 562, 583, 657
PspPPI RGGWCCY 3 cut(s) 190, 351, 396
PsuI RGATCY 1 cut(s) 135
PsyI GACNNNGTC 1 cut(s) 65
RruI TCGCGA 1 cut(s) 533
RsaI GTAC 4 cut(s) 296, 368, 692, 730
RsaNI GTAC 4 cut(s) 295, 367, 691, 729
RseI CAYNNNNRTG 1 cut(s) 599
SacI GAGCTC 2 cut(s) 333, 531
SatI GCNGC 7 cut(s) 41, 93, 221, 307, 571, 701, 765
Sau3AI GATC 8 cut(s) 135, 495, 501, 517, 534, 556, 577, 756
Sau96I GGNCC 9 cut(s) 190, 246, 299, 316, 351, 396, 562, 583, 657
ScaI AGTACT 1 cut(s) 730
SchI GAGTC 3 cut(s) 119, 245, 680
ScrFI CCNGG 4 cut(s) 303, 393, 394, 433
SduI GDGCHC 3 cut(s) 333, 531, 793
SfcI CTRYAG 1 cut(s) 676
SfiI GGCCNNNNNGGCC 1 cut(s) 306
SfoI GGCGCC 1 cut(s) 763
SinI GGWCC 7 cut(s) 190, 316, 351, 396, 562, 583, 657
SmaI CCCGGG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 2 cut(s) 194, 311
SmoI CTYRAG 2 cut(s) 194, 311
Sse9I AATT 1 cut(s) 56
SseBI AGGCCT 2 cut(s) 416, 672
SsiI CCGC 8 cut(s) 93, 170, 204, 221, 306, 571, 700, 765
SspDI GGCGCC 1 cut(s) 761
SstI GAGCTC 2 cut(s) 333, 531
StuI AGGCCT 2 cut(s) 416, 672
StyD4I CCNGG 4 cut(s) 301, 391, 392, 431
TaaI ACNGT 5 cut(s) 115, 145, 340, 601, 788
TaiI ACGT 3 cut(s) 66, 123, 624
TaqI TCGA 5 cut(s) 54, 60, 498, 516, 618
TasI AATT 1 cut(s) 56
TatI WGTACW 1 cut(s) 728
TauI GCSGC 6 cut(s) 95, 223, 309, 573, 703, 767
TscAI CASTG 2 cut(s) 24, 362
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 16, 44, 560
TspMI CCCGGG 1 cut(s) 392
TspRI CASTG 2 cut(s) 24, 362
Tth111I GACNNNGTC 1 cut(s) 65
VpaK11BI GGWCC 7 cut(s) 190, 316, 351, 396, 562, 583, 657
XapI RAATTY 1 cut(s) 56
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XmaI CCCGGG 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 614
ZraI GACGTC 1 cut(s) 622
ZrmI AGTACT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.