FvH4_4g11974

Mitochondrial pyruvate carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005603
Physical Location & Seq
Forward (+)
15695789 .. 15697584
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11974.t1

Sequence Viewer

Length: 354 bp
ATGGCAAATTCTAAGCTGCAAGCACTCTGGAACCACCCCGCCGGCCCTAAAACTATTCATTTCTGGGCTCCGACGTTCAAATGGGGAATAACCATTGCAAATATTCTCGACTCCTCCAAACCACCTGACCAAGTTTCCTATGCACAACAAACAGTGATTACAAGCACTGGACTTATCTGGGCAAGATTTGGCACAGTAATCACCCCGAAGAACTGGAATCTAGTCAGTGTCAGTTTGGGGATGGCTGCCACTTCAACTTTTCAACTTACACGTAAAATTCAGCATGACTACCTATCTTCCAAAGACCAACAAGCTGCTTCAGAGAACATTGAGACCAATAGTAGTCTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MPC

Protein Analysis

118

Amino Acids

12.9

Weight (kDa)

9.46

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPC PF03650 6 - 112 1.3e-35 Mitochondrial pyruvate carriers
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AcsI RAATTY 2 cut(s) 7, 276
AcuI CTGAAG 1 cut(s) 303
AflIII ACRYGT 1 cut(s) 269
AgsI TTSAA 3 cut(s) 79, 255, 263
AluBI AGCT 2 cut(s) 16, 314
AluI AGCT 2 cut(s) 16, 314
Alw26I GTCTC 2 cut(s) 326, 350
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 3 cut(s) 16, 245, 314
ApoI RAATTY 2 cut(s) 7, 276
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 193
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 3 cut(s) 3, 232, 301
BccI CCATC 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 326, 350
BfaI CTAG 1 cut(s) 221
BisI GCNGC 3 cut(s) 17, 246, 315
BlsI GCNGC 3 cut(s) 18, 247, 316
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 32, 69
BsaAI YACGTR 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 326
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 2 cut(s) 172, 218
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 172, 218
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 3 cut(s) 3, 232, 301
BshFI GGCC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 42
BsmAI GTCTC 2 cut(s) 326, 350
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 70
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 32, 69
BspTNI GGTCTC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 2 cut(s) 172, 218
BssAI RCCGGY 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 154, 196
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 21, 43
BstDEI CTNAG 2 cut(s) 12, 347
BstF5I GGATG 1 cut(s) 246
BstMAI GTCTC 2 cut(s) 326, 350
BstV1I GCAGC 3 cut(s) 3, 232, 301
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 3 cut(s) 159, 165, 232
Cac8I GCNNGC 2 cut(s) 21, 43
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 44
CviAII CATG 1 cut(s) 284
CviJI RGCY 5 cut(s) 16, 45, 68, 245, 314
CviKI_1 RGCY 5 cut(s) 16, 45, 68, 245, 314
DdeI CTNAG 2 cut(s) 12, 347
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 1 cut(s) 287
FaiI YATR 2 cut(s) 141, 285
FatI CATG 1 cut(s) 283
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 17, 246, 315
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 3 cut(s) 17, 246, 315
FspBI CTAG 1 cut(s) 221
GluI GCNGC 3 cut(s) 17, 246, 315
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 42
Hin1II CATG 1 cut(s) 287
HinfI GANTC 2 cut(s) 110, 217
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 72, 322
Hpy188III TCNNGA 2 cut(s) 28, 107
Hpy99I CGWCG 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 154, 196
HpyCH4IV ACGT 2 cut(s) 74, 271
HpyCH4V TGCA 3 cut(s) 19, 98, 143
HpyF3I CTNAG 2 cut(s) 12, 347
HpySE526I ACGT 2 cut(s) 74, 271
Hsp92II CATG 1 cut(s) 287
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 7 cut(s) 13, 49, 55, 138, 153, 163, 199
Lsp1109I GCAGC 3 cut(s) 3, 232, 301
MaeI CTAG 1 cut(s) 221
MaeII ACGT 2 cut(s) 74, 271
MboII GAAGA 2 cut(s) 220, 288
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 2 cut(s) 7, 276
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 1 cut(s) 124
MroNI GCCGGC 1 cut(s) 41
MseI TTAA 1 cut(s) 352
MspI CCGG 1 cut(s) 42
NaeI GCCGGC 1 cut(s) 43
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 2 cut(s) 32, 69
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 3 cut(s) 18, 247, 316
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 32, 69
PspPI GGNCC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 3 cut(s) 17, 246, 315
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 70
SetI ASST 6 cut(s) 18, 77, 127, 274, 294, 316
Sse9I AATT 2 cut(s) 7, 276
SsiI CCGC 1 cut(s) 39
SspI AATATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 154, 196
TaiI ACGT 2 cut(s) 77, 274
TaqI TCGA 1 cut(s) 108
TasI AATT 2 cut(s) 7, 276
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TscAI CASTG 3 cut(s) 159, 172, 232
TseI GCWGC 3 cut(s) 16, 245, 314
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 3 cut(s) 159, 172, 232
XapI RAATTY 2 cut(s) 7, 276
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.