Rw2G043620

Mitochondrial pyruvate carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005603
Physical Location & Seq
Reverse (-)
70074157 .. 70075942
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043620.1

Sequence Viewer

Length: 324 bp
ATGGCAAATTCTAAGCTGCAAGCGCTGTGGAACCACCCCGCCGGCCCAAAAACTATTCATTTCTGGGCTCCAACTTTCAAATGGGGAATAACCATTGCAAATATTCTCGACTCCTCTAAACCACCTGAGCAAGTTTCCTATGCTCAACAAGCAGCGATTATGGGCAGTGGACTTATATGGACAAGATGGGGCACAGTAATTACCCCAAAGAACTGGAATCTAGTCAGCGTCAATTTTGGGATGGCTGTCACTTCCATGTTTCAACTTGCACGTAAAACTCAGTTAATACCTTTATTAAACGAGGACGTCTGTTACGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MPC

Protein Analysis

107

Amino Acids

12.02

Weight (kDa)

9.52

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPC PF03650 6 - 94 5.3e-35 Mitochondrial pyruvate carriers
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 309
AciI CCGC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 306
AfeI AGCGCT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 79, 263
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 16, 152
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 3, 164
BccI CCATC 2 cut(s) 180, 235
BfaI CTAG 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 2 cut(s) 17, 153
BlsI GCNGC 2 cut(s) 18, 154
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 32, 69
Bpu10I CCTNAGC 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 306
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 117, 293
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 2 cut(s) 3, 164
BshFI GGCC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 42
BsnI GGCC 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 70, 194
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 118, 292
BspLI GGNNCC 2 cut(s) 32, 69
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 41
BssNI GRCGYC 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 306
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 21, 43
BstDEI CTNAG 3 cut(s) 12, 126, 279
BstF5I GGATG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 22, 149
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 3, 164
BstXI CCANNNNNNTGG 1 cut(s) 213
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 21, 43
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 217
CspCI CAANNNNNGTGG 2 cut(s) 8, 43
CviAII CATG 1 cut(s) 256
CviJI RGCY 4 cut(s) 16, 45, 68, 245
CviKI_1 RGCY 4 cut(s) 16, 45, 68, 245
DdeI CTNAG 3 cut(s) 12, 126, 279
Eco24I GRGCYC 1 cut(s) 70
Eco47III AGCGCT 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 1 cut(s) 259
FaiI YATR 5 cut(s) 141, 161, 176, 178, 257
FatI CATG 1 cut(s) 255
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 17, 153
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 17, 153
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 24
GluI GCNGC 2 cut(s) 17, 153
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 2 cut(s) 110, 217
HpaII CCGG 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 2 cut(s) 271, 306
HpyCH4V TGCA 3 cut(s) 19, 98, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 149
HpyF3I CTNAG 3 cut(s) 12, 126, 279
HpySE526I ACGT 2 cut(s) 271, 306
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 23
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 4 cut(s) 49, 55, 138, 199
Lsp1109I GCAGC 2 cut(s) 3, 164
MaeI CTAG 1 cut(s) 221
MaeII ACGT 2 cut(s) 271, 306
MaeIII GTNAC 2 cut(s) 247, 311
MhlI GDGCHC 2 cut(s) 70, 194
MluCI AATT 3 cut(s) 7, 198, 232
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 2 cut(s) 124, 295
MroNI GCCGGC 1 cut(s) 41
MseI TTAA 2 cut(s) 284, 296
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 22, 149
NaeI GCCGGC 1 cut(s) 43
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 32, 69
NmuCI GTSAC 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 2 cut(s) 18, 154
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 32, 69
PspPI GGNCC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 2 cut(s) 284, 296
SatI GCNGC 2 cut(s) 17, 153
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 2 cut(s) 70, 194
SetI ASST 5 cut(s) 18, 127, 274, 292, 309
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 3 cut(s) 7, 198, 232
SsiI CCGC 1 cut(s) 39
SspI AATATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 2 cut(s) 274, 309
TaqI TCGA 1 cut(s) 108
TasI AATT 3 cut(s) 7, 198, 232
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 284, 296
Tru9I TTAA 2 cut(s) 284, 296
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 2 cut(s) 16, 152
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 172
XapI RAATTY 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XspI CTAG 1 cut(s) 221
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.