pycom09g04170

Mitochondrial pyruvate carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0005603
Physical Location & Seq
Forward (+)
3072993 .. 3074392
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04170.1

Sequence Viewer

Length: 330 bp
ATGGCAAATTCCAAGCTGCAAGCATTTTGGAACCACCCAGCTGGCCCCAAAACGATTCATTTCTGGGCCCCAACATTTAAATGGGGTCTAACCATTGCAAATATTCTTGACTCAGCAACACCACCAGAGAAACTATCCTATCCTCAGCAATCAGTCCTTGCATGCAGTGGACTAATATGGGCAAGATACGGCACAGTAATTATACCAAAGAATTGGAATCTTGTGAGTGTCAATTTCGCTATGTCTGTAACCGCCATGTATCAACTTTCGCGTAAAATTCAGCATGACTTGTCTATCAAAAACCATGAAGTTGCTGCAGAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MPC

Protein Analysis

110

Amino Acids

12.27

Weight (kDa)

8.82

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPC PF03650 6 - 105 4e-37 Mitochondrial pyruvate carriers
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 271
AciI CCGC 1 cut(s) 252
AcsI RAATTY 2 cut(s) 7, 276
AluBI AGCT 2 cut(s) 16, 41
AluI AGCT 2 cut(s) 16, 41
AoxI GGCC 2 cut(s) 43, 66
ApaI GGGCCC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 16, 314
ApoI RAATTY 2 cut(s) 7, 276
AspS9I GGNCC 3 cut(s) 44, 66, 67
BaeGI GKGCMC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 3, 301
BceAI ACGGC 1 cut(s) 205
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 2 cut(s) 17, 315
BlsI GCNGC 2 cut(s) 18, 316
BmgT120I GGNCC 3 cut(s) 44, 66, 67
BmiI GGNNCC 4 cut(s) 32, 46, 68, 69
Bpu10I CCTNAGC 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 126, 158
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 3, 301
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 45, 68
BsnI GGCC 2 cut(s) 45, 68
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 70
BspACI CCGC 1 cut(s) 252
BspANI GGCC 2 cut(s) 45, 68
BspCNI CTCAG 2 cut(s) 125, 157
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 4 cut(s) 32, 46, 68, 69
BspMAI CTGCAG 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 21, 43, 163
BstDEI CTNAG 2 cut(s) 112, 144
BstFNI CGCG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 3, 301
BstXI CCANNNNNNTGG 2 cut(s) 41, 213
BsuRI GGCC 2 cut(s) 45, 68
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 3 cut(s) 21, 43, 163
Cfr13I GGNCC 3 cut(s) 44, 66, 67
CviAII CATG 4 cut(s) 162, 256, 284, 305
CviJI RGCY 4 cut(s) 16, 41, 45, 68
CviKI_1 RGCY 4 cut(s) 16, 41, 45, 68
DdeI CTNAG 2 cut(s) 112, 144
DraI TTTAAA 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 4 cut(s) 165, 259, 287, 308
FaiI YATR 7 cut(s) 163, 178, 203, 242, 257, 285, 306
FatI CATG 4 cut(s) 161, 255, 283, 304
Fnu4HI GCNGC 2 cut(s) 17, 315
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 17, 315
GluI GCNGC 2 cut(s) 17, 315
GsaI CCCAGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 45, 68
Hin1II CATG 4 cut(s) 165, 259, 287, 308
HinfI GANTC 3 cut(s) 55, 110, 217
Hpy166II GTNNAC 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 5 cut(s) 19, 98, 161, 165, 317
HpyF3I CTNAG 2 cut(s) 112, 144
Hsp92II CATG 4 cut(s) 165, 259, 287, 308
LpnPI CCDG 4 cut(s) 27, 49, 51, 138
Lsp1109I GCAGC 2 cut(s) 3, 301
MaeIII GTNAC 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 5 cut(s) 7, 198, 211, 232, 276
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 1 cut(s) 153
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 79
MspA1I CMGCKG 1 cut(s) 41
MvnI CGCG 1 cut(s) 271
NlaIII CATG 4 cut(s) 165, 259, 287, 308
NlaIV GGNNCC 4 cut(s) 32, 46, 68, 69
NspI RCATGY 1 cut(s) 165
PaeI GCATGC 1 cut(s) 165
PfeI GAWTC 2 cut(s) 55, 217
PkrI GCNGC 2 cut(s) 18, 316
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 37
PspN4I GGNNCC 4 cut(s) 32, 46, 68, 69
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 3 cut(s) 44, 66, 67
PstI CTGCAG 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 79
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 2 cut(s) 17, 315
Sau96I GGNCC 3 cut(s) 44, 66, 67
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 70
SetI ASST 2 cut(s) 18, 43
SfcI CTRYAG 1 cut(s) 315
SmiI ATTTAAAT 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 79
SphI GCATGC 1 cut(s) 165
Sse9I AATT 5 cut(s) 7, 198, 211, 232, 276
SsiI CCGC 1 cut(s) 252
SspI AATATT 1 cut(s) 103
SwaI ATTTAAAT 1 cut(s) 79
TaaI ACNGT 1 cut(s) 196
TasI AATT 5 cut(s) 7, 198, 211, 232, 276
TfiI GAWTC 2 cut(s) 55, 217
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 172
TseI GCWGC 2 cut(s) 16, 314
TspDTI ATGAA 2 cut(s) 47, 321
TspRI CASTG 1 cut(s) 172
XapI RAATTY 2 cut(s) 7, 276
XceI RCATGY 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.