MD17G1108400.v1.1

Mitochondrial pyruvate carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0005603
Physical Location & Seq
Forward (+)
9305733 .. 9308423
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1108400.v1.1.491

Sequence Viewer

Length: 327 bp
ATGGCAAATCCCAAGCTGAGAGCACTTTGGAACCACCCAGCTGGCCCTAAAACTATCCATTTCTGGGCCCCAACATTTAAATGGGGTCTAACCATTGCAAATATTCTCGACTCAGCAAAACCACCAGAGAAACTATCCTATCCTCAGCAATCAGCCCTTGCATCCACCGGACTTATATGGGCAAGATACAGCGCAGTAATTACACCAAAGAATTGGAATCTTTTGAGTGTTAGTTTCGCGATGTCTGTAACCGCTATGTATCAACTTTCGCGTAAAATTCAGCATGACTTATCCACCAAAAACCAAGAAGTTGCTGCAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MPC

Protein Analysis

109

Amino Acids

12.09

Weight (kDa)

9.75

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPC PF03650 6 - 105 6.3e-39 Mitochondrial pyruvate carriers
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 239, 271
AciI CCGC 1 cut(s) 252
AcsI RAATTY 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 64
AluBI AGCT 2 cut(s) 16, 41
AluI AGCT 2 cut(s) 16, 41
Alw21I GWGCWC 1 cut(s) 25
AoxI GGCC 2 cut(s) 43, 66
ApaI GGGCCC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 276
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 3 cut(s) 44, 66, 67
BaeGI GKGCMC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 25
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 301
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BmgT120I GGNCC 3 cut(s) 44, 66, 67
BmiI GGNNCC 3 cut(s) 32, 68, 69
BmsI GCATC 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 3 cut(s) 8, 126, 158
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 1 cut(s) 301
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 2 cut(s) 239, 271
BshFI GGCC 2 cut(s) 45, 68
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 64
BsnI GGCC 2 cut(s) 45, 68
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 25, 70
Bsp68I TCGCGA 1 cut(s) 239
BspACI CCGC 1 cut(s) 252
BspANI GGCC 2 cut(s) 45, 68
BspCNI CTCAG 3 cut(s) 9, 125, 157
BspFNI CGCG 2 cut(s) 239, 271
BspLI GGNNCC 3 cut(s) 32, 68, 69
BspMAI CTGCAG 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 3 cut(s) 17, 112, 144
BstF5I GGATG 1 cut(s) 161
BstFNI CGCG 2 cut(s) 239, 271
BstHHI GCGC 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 2 cut(s) 239, 271
BstV1I GCAGC 1 cut(s) 301
BstXI CCANNNNNNTGG 2 cut(s) 41, 213
BsuRI GGCC 2 cut(s) 45, 68
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 161
BtuMI TCGCGA 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 3 cut(s) 44, 66, 67
CviAII CATG 1 cut(s) 284
CviJI RGCY 5 cut(s) 16, 41, 45, 68, 155
CviKI_1 RGCY 5 cut(s) 16, 41, 45, 68, 155
DdeI CTNAG 3 cut(s) 17, 112, 144
DraI TTTAAA 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 1 cut(s) 287
FaiI YATR 4 cut(s) 176, 178, 257, 285
FatI CATG 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 148
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 315
GlaI GCGC 1 cut(s) 193
GluI GCNGC 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 45, 68
HapII CCGG 1 cut(s) 168
HhaI GCGC 1 cut(s) 194
Hin1II CATG 1 cut(s) 287
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 2 cut(s) 110, 217
HpaII CCGG 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 107, 238
HpyCH4V TGCA 3 cut(s) 98, 161, 317
HpyF3I CTNAG 3 cut(s) 17, 112, 144
Hsp92II CATG 1 cut(s) 287
HspAI GCGC 1 cut(s) 192
LpnPI CCDG 5 cut(s) 27, 49, 51, 138, 181
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 247
MhlI GDGCHC 2 cut(s) 25, 70
MluCI AATT 3 cut(s) 198, 211, 276
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 1 cut(s) 153
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 79
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 168
MvnI CGCG 2 cut(s) 239, 271
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 3 cut(s) 32, 68, 69
NruI TCGCGA 1 cut(s) 239
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 37
PspN4I GGNNCC 3 cut(s) 32, 68, 69
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 3 cut(s) 44, 66, 67
PstI CTGCAG 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 41
RruI TCGCGA 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 79
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 315
Sau96I GGNCC 3 cut(s) 44, 66, 67
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 2 cut(s) 25, 70
SetI ASST 2 cut(s) 18, 43
SfaNI GCATC 1 cut(s) 170
SfcI CTRYAG 1 cut(s) 315
SmiI ATTTAAAT 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 79
Sse9I AATT 3 cut(s) 198, 211, 276
SsiI CCGC 1 cut(s) 252
SspI AATATT 1 cut(s) 103
SwaI ATTTAAAT 1 cut(s) 79
TaqI TCGA 1 cut(s) 108
TasI AATT 3 cut(s) 198, 211, 276
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseI GCWGC 1 cut(s) 314
XapI RAATTY 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.