Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005603

Physical Location & Seq

Genomic Coordinates Forward (+)

3062983 .. 3065103

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCCTTCGGAAGAGGCTGAAATACTCGATCGATCTTGTAACTTTAGTGGTAGAAAGCGTTTACCCACACTCAAAGTCAAGCTTAAATCTCACCTCCTCTATACTTCACTTTCTTTGAATTCAACCCCAAATTATTGGAAGGACCACTATGATAATGATTTTATATATAAGCTTTTATCTTCTTCTTCCTCAGTTATGCTGTATATTCAATCAGATCTCCCGAAGGGATCCGAGAATCATTTCATGGCAAATTCCAAGCTGCAAGCATTTTGGAACCACCCAGCTGGCCCCAAAACGATTCATTTCTGGGCCCCAACATTTAAATGGGGTCTAACCATTGCAAATATTCTTGACTCAGCAACACCACCAGAGAAACTATCCTATCCTCAACAATCAGTCCTTGCATGCAGTGGACTAATATGGGCAAGATACAGCACAGTAATTATACCAAAGAACTGGAATCTTGTGAGTGTCAATTTCGCTATGTCTGTAACCGCCATGTATCAACTTTCCCGTAAAATTCAGCATGACTTGTCTATCAAAAACCAAGAAGTTGCTGCAGAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

191

Amino Acids

21.66

Weight (kDa)

8.79

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05590 AT4G05590 AT4G05590
fragaria_vesca	FvH4_4g11974 FvH4_4g11974 FvH4_6g41830 FvH4_6g41830
malus_domestica	MD09G1116900.v1.1 MD17G1108400.v1.1
prunus_persica	Prupe.3G207000_v2.0.a1 Prupe.3G207100_v2.0.a1 Prupe.3G207600_v2.0.a1 Prupe.3G207600_v2.0.a1 Prupe.3G207600_v2.0.a1 Prupe.3G207800_v2.0.a1 Prupe.3G207800_v2.0.a1
pyrus_communis	pycom09g04160 pycom09g04170 pycom09g04180
rosa_chinensis	RchiOBHm_Chr2g0157631
rosa_multiflora	Rmu_sc0000195.1_g000051
rosa_roxburghii	Rroxscaffold_2G00092060
rosa_rugosa	Rorug02G0462500
rosa_samantha	Rh2AG526600 Rh2BG541500 Rh2CG511300 Rh2DG550000
rosa_wichuraiana	Rw2G043620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	2 cut(s)	222, 235
AcsI	RAATTY	3 cut(s)	118, 250, 519
AgsI	TTSAA	3 cut(s)	118, 123, 209
AluBI	AGCT	4 cut(s)	82, 172, 259, 284
AluI	AGCT	4 cut(s)	82, 172, 259, 284
AlwI	GGATC	2 cut(s)	222, 235
AoxI	GGCC	2 cut(s)	286, 309
ApaI	GGGCCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	259, 557
ApoI	RAATTY	3 cut(s)	118, 250, 519
Asp700I	GAANNNNTTC	1 cut(s)	239
AspS9I	GGNCC	4 cut(s)	142, 287, 309, 310
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	313
BamHI	GGATCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	246, 544
BfmI	CTRYAG	1 cut(s)	558
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	2 cut(s)	260, 558
BlsI	GCNGC	2 cut(s)	261, 559
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	4 cut(s)	142, 287, 309, 310
BmiI	GGNNCC	5 cut(s)	229, 275, 289, 311, 312
Bsa29I	ATCGAT	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	204, 369
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	246, 544
BseYI	CCCAGC	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	288, 311
BshVI	ATCGAT	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	31
BsnI	GGCC	2 cut(s)	288, 311
Bsp120I	GGGCCC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	28, 32, 214, 227
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	2 cut(s)	288, 311
BspCNI	CTCAG	2 cut(s)	203, 368
BspDI	ATCGAT	1 cut(s)	31
BspLI	GGNNCC	5 cut(s)	229, 275, 289, 311, 312
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	2 cut(s)	222, 235
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	461
BssMI	GATC	4 cut(s)	28, 32, 214, 227
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	6
BstC8I	GCNNGC	3 cut(s)	264, 286, 406
BstDEI	CTNAG	2 cut(s)	190, 355
BstKTI	GATC	4 cut(s)	31, 35, 217, 230
BstMBI	GATC	4 cut(s)	28, 32, 214, 227
BstMCI	CGRYCG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	2 cut(s)	246, 544
BstX2I	RGATCY	2 cut(s)	214, 227
BstXI	CCANNNNNNTGG	3 cut(s)	135, 284, 456
BstYI	RGATCY	2 cut(s)	214, 227
Bsu15I	ATCGAT	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	288, 311
BsuTUI	ATCGAT	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	3 cut(s)	264, 286, 406
Cfr13I	GGNCC	4 cut(s)	142, 287, 309, 310
ClaI	ATCGAT	1 cut(s)	31
CviAII	CATG	4 cut(s)	244, 405, 499, 527
CviJI	RGCY	7 cut(s)	17, 82, 172, 259, 284, 288, 311
CviKI_1	RGCY	7 cut(s)	17, 82, 172, 259, 284, 288, 311
DdeI	CTNAG	2 cut(s)	190, 355
DpnI	GATC	4 cut(s)	30, 34, 216, 229
DpnII	GATC	4 cut(s)	28, 32, 214, 227
DraI	TTTAAA	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRI	GAATTC	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	313
FaeI	CATG	4 cut(s)	247, 408, 502, 530
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FatI	CATG	4 cut(s)	243, 404, 498, 526
Fnu4HI	GCNGC	2 cut(s)	260, 558
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	260, 558
GluI	GCNGC	2 cut(s)	260, 558
GsaI	CCCAGC	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	288, 311
Hin1II	CATG	4 cut(s)	247, 408, 502, 530
HindIII	AAGCTT	2 cut(s)	80, 170
HinfI	GANTC	4 cut(s)	235, 298, 353, 460
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	62, 413
Hpy188I	TCNGA	3 cut(s)	10, 214, 232
Hpy188III	TCNNGA	2 cut(s)	220, 350
Hpy8I	GTNNAC	2 cut(s)	62, 413
HpyAV	CCTTC	3 cut(s)	15, 133, 217
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	5 cut(s)	262, 341, 404, 408, 560
HpyF3I	CTNAG	2 cut(s)	190, 355
Hsp92II	CATG	4 cut(s)	247, 408, 502, 530
Kzo9I	GATC	4 cut(s)	28, 32, 214, 227
LpnPI	CCDG	5 cut(s)	270, 292, 294, 381, 442
Lsp1109I	GCAGC	2 cut(s)	246, 544
MaeIII	GTNAC	2 cut(s)	38, 490
MalI	GATC	4 cut(s)	30, 34, 216, 229
MboI	GATC	4 cut(s)	28, 32, 214, 227
MboII	GAAGA	4 cut(s)	23, 171, 174, 177
MflI	RGATCY	2 cut(s)	214, 227
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	6 cut(s)	118, 130, 250, 441, 475, 519
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	5 cut(s)	7, 104, 107, 199, 396
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	2 cut(s)	84, 321
MslI	CAYNNNNRTG	1 cut(s)	322
MspA1I	CMGCKG	1 cut(s)	284
NdeII	GATC	4 cut(s)	28, 32, 214, 227
NlaIII	CATG	4 cut(s)	247, 408, 502, 530
NlaIV	GGNNCC	5 cut(s)	229, 275, 289, 311, 312
NspI	RCATGY	1 cut(s)	408
PaeI	GCATGC	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	235, 298, 460
PkrI	GCNGC	2 cut(s)	261, 559
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	5 cut(s)	229, 275, 289, 311, 312
PspOMI	GGGCCC	1 cut(s)	309
PspPI	GGNCC	4 cut(s)	142, 287, 309, 310
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	2 cut(s)	214, 227
PvuI	CGATCG	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	322
SaqAI	TTAA	2 cut(s)	84, 321
SatI	GCNGC	2 cut(s)	260, 558
Sau3AI	GATC	4 cut(s)	28, 32, 214, 227
Sau96I	GGNCC	4 cut(s)	142, 287, 309, 310
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	5 cut(s)	84, 96, 174, 261, 286
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	142
SmiI	ATTTAAAT	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	322
SphI	GCATGC	1 cut(s)	408
Sse9I	AATT	6 cut(s)	118, 130, 250, 441, 475, 519
SsiI	CCGC	1 cut(s)	495
SspI	AATATT	1 cut(s)	346
SwaI	ATTTAAAT	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	27, 31
TasI	AATT	6 cut(s)	118, 130, 250, 441, 475, 519
TfiI	GAWTC	3 cut(s)	235, 298, 460
Tru1I	TTAA	2 cut(s)	84, 321
Tru9I	TTAA	2 cut(s)	84, 321
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	2 cut(s)	259, 557
TspDTI	ATGAA	2 cut(s)	232, 290
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	3 cut(s)	118, 250, 519
XceI	RCATGY	1 cut(s)	408
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.