Rroxscaffold_2G00092060

Mitochondrial pyruvate carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005603
Physical Location & Seq
Forward (+)
13621767 .. 13622978
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00092060.1

Sequence Viewer

Length: 342 bp
ATGGCAAATTCTAAGCTGCAAGCGCTGTGGAACCACCCCGCTGGCCCTAAAACTATTCATTTCTGGGCTCCAACTTTCAAATGGGGAATAACCATTGCAAATATTCTCGACTCCTCTAAACCACCTGAGCAAGTTTCCTATGCTCAACAAACAGCGATTATGGGCAGTGGACTTATATGGACAAGATGGGGCACAGTAATTACCCCAAAGAACTGGAATCTAGTCAGCGTCAATTTTGGGATGGCTGTCACTTCCATGTTTCAACTTGCACGTAAAACTCAGCATGACTACTTATCTTCCGATCACCAACAAGCTGCTTCAGAGAGCATTGAAGACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MPC

Protein Analysis

113

Amino Acids

12.66

Weight (kDa)

8.11

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPC PF03650 6 - 111 4.6e-38 Mitochondrial pyruvate carriers
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 303
AfeI AGCGCT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 79, 263, 332
AluBI AGCT 2 cut(s) 16, 314
AluI AGCT 2 cut(s) 16, 314
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 16, 314
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 3, 301
BccI CCATC 2 cut(s) 180, 235
BfaI CTAG 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 2 cut(s) 17, 315
BlsI GCNGC 2 cut(s) 18, 316
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 32, 69
Bpu10I CCTNAGC 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 117, 293
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 2 cut(s) 3, 301
BshFI GGCC 1 cut(s) 45
BsnI GGCC 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 70, 194
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 118, 292
BspLI GGNNCC 2 cut(s) 32, 69
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 218
BssMI GATC 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 21, 43
BstDEI CTNAG 3 cut(s) 12, 126, 279
BstF5I GGATG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 3, 301
BstXI CCANNNNNNTGG 2 cut(s) 41, 213
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 21, 43
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 217
CspCI CAANNNNNGTGG 2 cut(s) 8, 43
CviAII CATG 2 cut(s) 256, 284
CviJI RGCY 5 cut(s) 16, 45, 68, 245, 314
CviKI_1 RGCY 5 cut(s) 16, 45, 68, 245, 314
DdeI CTNAG 3 cut(s) 12, 126, 279
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 70
Eco47III AGCGCT 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 2 cut(s) 259, 287
FaiI YATR 6 cut(s) 141, 161, 176, 178, 257, 285
FatI CATG 2 cut(s) 255, 283
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 17, 315
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 17, 315
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 24
GluI GCNGC 2 cut(s) 17, 315
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 45
HgaI GACGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 259, 287
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 2 cut(s) 110, 217
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 301, 322
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 19, 98, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 3 cut(s) 12, 126, 279
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 2 cut(s) 259, 287
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 4 cut(s) 27, 49, 138, 199
Lsp1109I GCAGC 2 cut(s) 3, 301
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 247
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 1 cut(s) 288
MhlI GDGCHC 2 cut(s) 70, 194
MluCI AATT 3 cut(s) 7, 198, 232
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 1 cut(s) 124
MslI CAYNNNNRTG 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 1 cut(s) 301
NlaIII CATG 2 cut(s) 259, 287
NlaIV GGNNCC 2 cut(s) 32, 69
NmuCI GTSAC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 2 cut(s) 18, 316
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 32, 69
PspPI GGNCC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 254
SatI GCNGC 2 cut(s) 17, 315
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 2 cut(s) 70, 194
SetI ASST 4 cut(s) 18, 127, 274, 316
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 3 cut(s) 7, 198, 232
SsiI CCGC 1 cut(s) 39
SspI AATATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 108
TasI AATT 3 cut(s) 7, 198, 232
TfiI GAWTC 1 cut(s) 217
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 2 cut(s) 16, 314
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 172
XapI RAATTY 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.