FvH4_6g41830

Mitochondrial pyruvate carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005603
Physical Location & Seq
Reverse (-)
32775879 .. 32777997
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41830.t2

Sequence Viewer

Length: 342 bp
ATGGCAAATTCTAAGCTGCAAGCGCTGTGGAACCACCCTGCCGGCCCTAAAACTATTCATTTCTGGGCTCCAACTTTCAAATGGGGAATAACCATTGCAAATATTCTCGACTCCTCTAAACCACCTGACCAAGTTTCCTATGCTCAACAAACAGTGATTATGGGCAGCGGACTTATATGGGCAAGATGGGGCACAGTTATCACCCCAAAGAACTGGAATCTAGTCAGCGTCAACTTTGGGATGGCCGTCACTTCCATGTTTCAACTCGCACGTAAAACTCAGCATGACTACTTATCTTCCAAAGACCAATTAGCTGCTTCAGAGAACAATGAAGGCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MPC

Protein Analysis

114

Amino Acids

12.59

Weight (kDa)

9.46

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPC PF03650 6 - 92 3.3e-33 Mitochondrial pyruvate carriers
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 303
AfeI AGCGCT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 79, 263
AluBI AGCT 2 cut(s) 16, 314
AluI AGCT 2 cut(s) 16, 314
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 3 cut(s) 43, 243, 334
ApeKI GCWGC 3 cut(s) 16, 165, 314
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 3 cut(s) 3, 177, 301
BccI CCATC 2 cut(s) 180, 235
BceAI ACGGC 1 cut(s) 230
BfaI CTAG 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 3 cut(s) 17, 166, 315
BlsI GCNGC 3 cut(s) 18, 167, 316
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 32, 69
BsaAI YACGTR 1 cut(s) 272
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 3 cut(s) 3, 177, 301
BshFI GGCC 3 cut(s) 45, 245, 336
BsiSI CCGG 1 cut(s) 42
BsnI GGCC 3 cut(s) 45, 245, 336
Bsp1286I GDGCHC 2 cut(s) 70, 194
BspACI CCGC 1 cut(s) 168
BspANI GGCC 3 cut(s) 45, 245, 336
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 2 cut(s) 32, 69
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 154, 196
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 21, 43
BstDEI CTNAG 2 cut(s) 12, 279
BstF5I GGATG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 3, 177, 301
BstXI CCANNNNNNTGG 1 cut(s) 213
BsuRI GGCC 3 cut(s) 45, 245, 336
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 21, 43
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 217
CspCI CAANNNNNGTGG 2 cut(s) 8, 43
CviAII CATG 2 cut(s) 256, 284
CviJI RGCY 6 cut(s) 16, 45, 68, 245, 314, 336
CviKI_1 RGCY 6 cut(s) 16, 45, 68, 245, 314, 336
DdeI CTNAG 2 cut(s) 12, 279
EaeI YGGCCR 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 70
Eco47III AGCGCT 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 2 cut(s) 259, 287
FaiI YATR 6 cut(s) 141, 161, 176, 178, 257, 285
FatI CATG 2 cut(s) 255, 283
Fnu4HI GCNGC 3 cut(s) 17, 166, 315
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 3 cut(s) 17, 166, 315
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 24
GluI GCNGC 3 cut(s) 17, 166, 315
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 3 cut(s) 45, 245, 336
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 259, 287
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 2 cut(s) 110, 217
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 2 cut(s) 154, 196
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 2 cut(s) 19, 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 2 cut(s) 12, 279
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 2 cut(s) 259, 287
HspAI GCGC 1 cut(s) 23
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 49, 51, 55, 138, 199
Lsp1109I GCAGC 3 cut(s) 3, 177, 301
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 247
MboII GAAGA 1 cut(s) 288
MhlI GDGCHC 2 cut(s) 70, 194
MluCI AATT 2 cut(s) 7, 308
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 1 cut(s) 124
MroNI GCCGGC 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 22
NaeI GCCGGC 1 cut(s) 43
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 259, 287
NlaIV GGNNCC 2 cut(s) 32, 69
NmuCI GTSAC 1 cut(s) 247
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 3 cut(s) 18, 167, 316
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 32, 69
PspPI GGNCC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 254
SatI GCNGC 3 cut(s) 17, 166, 315
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 2 cut(s) 70, 194
SetI ASST 4 cut(s) 18, 127, 274, 316
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 2 cut(s) 7, 308
SsiI CCGC 1 cut(s) 168
SspI AATATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 154, 196
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 108
TasI AATT 2 cut(s) 7, 308
TfiI GAWTC 1 cut(s) 217
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 3 cut(s) 16, 165, 314
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 159
XapI RAATTY 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.