Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000195.1

Orthogroup ID

OG0005603

Physical Location & Seq

Genomic Coordinates Reverse (-)

190067 .. 191306

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000195.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggcaaattctaagctgcaagcgctgtggaaccaccccgccggcccaaaaactattcatttctgggctccaactttcaaatggggaataaccattgcaaatattctcgactcctctaaaccacctgagcaagtttcctatgctcaacaagcagcgattatgggcagtggacttatatggacaagatggggcacagtaattaccccaaagaactggaatctagtcagcgtcaattttgggatggctgtcacttccatgtttcaacttgcacgtaaaactcagcatgactacttatctcccaatgaccaacaaggcgaacaagctgcttcagagagcattgaagaccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

116

Amino Acids

12.93

Weight (kDa)

6.82

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05590 AT4G05590 AT4G05590
fragaria_vesca	FvH4_4g11974 FvH4_4g11974 FvH4_6g41830 FvH4_6g41830
malus_domestica	MD09G1116900.v1.1 MD17G1108400.v1.1
prunus_persica	Prupe.3G207000_v2.0.a1 Prupe.3G207100_v2.0.a1 Prupe.3G207600_v2.0.a1 Prupe.3G207600_v2.0.a1 Prupe.3G207600_v2.0.a1 Prupe.3G207800_v2.0.a1 Prupe.3G207800_v2.0.a1
pyrus_communis	pycom09g04160 pycom09g04170 pycom09g04180
rosa_chinensis	RchiOBHm_Chr2g0157631
rosa_multiflora	Rmu_sc0000195.1_g000051
rosa_roxburghii	Rroxscaffold_2G00092060
rosa_rugosa	Rorug02G0462500
rosa_samantha	Rh2AG526600 Rh2BG541500 Rh2CG511300 Rh2DG550000
rosa_wichuraiana	Rw2G043620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	312
AfeI	AGCGCT	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	79, 263, 341
AluBI	AGCT	2 cut(s)	16, 323
AluI	AGCT	2 cut(s)	16, 323
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	3 cut(s)	16, 152, 323
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	3 cut(s)	3, 164, 310
BccI	CCATC	2 cut(s)	180, 235
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BfaI	CTAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	3 cut(s)	17, 153, 324
BlsI	GCNGC	3 cut(s)	18, 154, 325
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	32, 69
Bpu10I	CCTNAGC	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	117, 293
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	3, 164, 310
BshFI	GGCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	42
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	70, 194
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	118, 292
BspLI	GGNNCC	2 cut(s)	32, 69
BsrDI	GCAATG	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	21, 43
BstDEI	CTNAG	3 cut(s)	12, 126, 279
BstF5I	GGATG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 149
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	3, 164, 310
BstXI	CCANNNNNNTGG	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	21, 43
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	8, 43
CviAII	CATG	2 cut(s)	256, 284
CviJI	RGCY	5 cut(s)	16, 45, 68, 245, 323
CviKI_1	RGCY	5 cut(s)	16, 45, 68, 245, 323
DdeI	CTNAG	3 cut(s)	12, 126, 279
Eco24I	GRGCYC	1 cut(s)	70
Eco47III	AGCGCT	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	2 cut(s)	259, 287
FaiI	YATR	6 cut(s)	141, 161, 176, 178, 257, 285
FatI	CATG	2 cut(s)	255, 283
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	17, 153, 324
FokI	GGATG	1 cut(s)	253
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	3 cut(s)	17, 153, 324
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	17, 153, 324
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	42
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	259, 287
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	2 cut(s)	110, 217
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	19, 98, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 149
HpyF3I	CTNAG	3 cut(s)	12, 126, 279
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	2 cut(s)	259, 287
HspAI	GCGC	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	4 cut(s)	49, 55, 138, 199
Lsp1109I	GCAGC	3 cut(s)	3, 164, 310
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	70, 194
MluCI	AATT	3 cut(s)	7, 198, 232
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	1 cut(s)	124
MroNI	GCCGGC	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	22, 149
NaeI	GCCGGC	1 cut(s)	43
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	259, 287
NlaIV	GGNNCC	2 cut(s)	32, 69
NmuCI	GTSAC	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	18, 154, 325
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Ppu21I	YACGTR	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	32, 69
PspPI	GGNCC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	254
SatI	GCNGC	3 cut(s)	17, 153, 324
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	70, 194
SetI	ASST	4 cut(s)	18, 127, 274, 325
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	7, 198, 232
SsiI	CCGC	1 cut(s)	39
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	108
TasI	AATT	3 cut(s)	7, 198, 232
TfiI	GAWTC	1 cut(s)	217
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	3 cut(s)	16, 152, 323
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.