MD09G1116900.v1.1

Mitochondrial pyruvate carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0005603
Physical Location & Seq
Forward (+)
8991364 .. 8993344
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1116900.v1.1.491

Sequence Viewer

Length: 330 bp
ATGGCAAATTCCAAGCTGCAAGCATTTTGGAACCACCCAGCTGGCCCCAAAACGATCCATTTCTGGGCCCCAACATTTAAATGGGGTCTAACCATTGCAAATATTCTTGACTCAGCAACACCACCAGAGAAACTATCCTATCCTCAGCAGTCAGTCCTTGCATGCAGTGGACTAATATGGGCAAGATACAGCACCGTAATTATACCAAAGAACTGGAATCTTGTGAGTGTCAATTTCGCTATGTCTGTAACCGCTATGTATCAACTTTCGCGTAAAATTCAGCATGACTTGTCCATCAAAAACCAAGAAGTTGCTGCAGAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MPC

Protein Analysis

110

Amino Acids

12.29

Weight (kDa)

8.82

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPC PF03650 6 - 106 5.6e-38 Mitochondrial pyruvate carriers
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 271
AciI CCGC 1 cut(s) 252
AclWI GGATC 1 cut(s) 49
AcsI RAATTY 2 cut(s) 7, 276
AfiI CCNNNNNNNGG 1 cut(s) 64
AluBI AGCT 2 cut(s) 16, 41
AluI AGCT 2 cut(s) 16, 41
AlwI GGATC 1 cut(s) 49
AoxI GGCC 2 cut(s) 43, 66
ApaI GGGCCC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 16, 314
ApoI RAATTY 2 cut(s) 7, 276
AspS9I GGNCC 3 cut(s) 44, 66, 67
BaeGI GKGCMC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 3, 301
BccI CCATC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 2 cut(s) 17, 315
BlsI GCNGC 2 cut(s) 18, 316
BmgT120I GGNCC 3 cut(s) 44, 66, 67
BmiI GGNNCC 4 cut(s) 32, 46, 68, 69
Bpu10I CCTNAGC 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 126, 158
BseNI ACTGG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 3, 301
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 45, 68
BslI CCNNNNNNNGG 1 cut(s) 64
BsnI GGCC 2 cut(s) 45, 68
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 1 cut(s) 252
BspANI GGCC 2 cut(s) 45, 68
BspCNI CTCAG 2 cut(s) 125, 157
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 4 cut(s) 32, 46, 68, 69
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 218
BssMI GATC 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 21, 43, 163
BstDEI CTNAG 2 cut(s) 112, 144
BstFNI CGCG 1 cut(s) 271
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 3, 301
BstXI CCANNNNNNTGG 2 cut(s) 41, 213
BsuRI GGCC 2 cut(s) 45, 68
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 3 cut(s) 21, 43, 163
Cfr13I GGNCC 3 cut(s) 44, 66, 67
CviAII CATG 2 cut(s) 162, 284
CviJI RGCY 4 cut(s) 16, 41, 45, 68
CviKI_1 RGCY 4 cut(s) 16, 41, 45, 68
DdeI CTNAG 2 cut(s) 112, 144
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
DraI TTTAAA 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 2 cut(s) 165, 287
FaiI YATR 6 cut(s) 163, 178, 203, 242, 257, 285
FatI CATG 2 cut(s) 161, 283
Fnu4HI GCNGC 2 cut(s) 17, 315
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 17, 315
GluI GCNGC 2 cut(s) 17, 315
GsaI CCCAGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 45, 68
Hin1II CATG 2 cut(s) 165, 287
HinfI GANTC 2 cut(s) 110, 217
Hpy166II GTNNAC 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 5 cut(s) 19, 98, 161, 165, 317
HpyF3I CTNAG 2 cut(s) 112, 144
Hsp92II CATG 2 cut(s) 165, 287
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 5 cut(s) 27, 49, 51, 138, 199
Lsp1109I GCAGC 2 cut(s) 3, 301
MaeIII GTNAC 1 cut(s) 247
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 4 cut(s) 7, 198, 232, 276
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 1 cut(s) 153
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 79
MspA1I CMGCKG 1 cut(s) 41
MvnI CGCG 1 cut(s) 271
NdeII GATC 1 cut(s) 54
NlaIII CATG 2 cut(s) 165, 287
NlaIV GGNNCC 4 cut(s) 32, 46, 68, 69
NspI RCATGY 1 cut(s) 165
PaeI GCATGC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 2 cut(s) 18, 316
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 37
PspN4I GGNNCC 4 cut(s) 32, 46, 68, 69
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 3 cut(s) 44, 66, 67
PstI CTGCAG 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 79
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 2 cut(s) 17, 315
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 3 cut(s) 44, 66, 67
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 70
SetI ASST 2 cut(s) 18, 43
SfcI CTRYAG 1 cut(s) 315
SmiI ATTTAAAT 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 79
SphI GCATGC 1 cut(s) 165
Sse9I AATT 4 cut(s) 7, 198, 232, 276
SsiI CCGC 1 cut(s) 252
SspI AATATT 1 cut(s) 103
SwaI ATTTAAAT 1 cut(s) 79
TaaI ACNGT 1 cut(s) 196
TasI AATT 4 cut(s) 7, 198, 232, 276
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 172
TseI GCWGC 2 cut(s) 16, 314
TspRI CASTG 1 cut(s) 172
XapI RAATTY 2 cut(s) 7, 276
XceI RCATGY 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.