Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Forward (+)

17025891 .. 17032114

Gene Structure 6224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13400.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGTGCCGCCGAGGAGGAAGAAATGGACGGAGGCGGAAGAGAGGACCCTGATCGACAAATACGGCGAGATGGTCGCTGATGGGACCCTGGCTAAGATGAAGACTAGGGAGAAGAAGTTCAAACCCATTGCTTATTATGTGAATTCCGTGCACTATGTTCAAGACCCTGTTGCATATCGCTGGCAATGGTCTTGGAAGGACGTTTCCACCAAGGTGCAGAACATGCGGCACCAGTATCTCCTTGTCAAGCAGAAGATCAAGAAGCAGCCGCCGGAGAGTAACTCCGGCGGTGGGGATAGTAGTGGGGAGTGTGGTGTGGAGGAGTTTGATTGGATGGAGGGGCTTACGCATTGGGCTAATTTCTTGAGGTATAAGGAGGTTTTTGGGGATATTGCGAGCAGTAATGGGAATGAGTTGATGGGGGGTTGGGAGAATTTTAATGGGGATGTGAGGGTGAGGGAGGATGGGGATGGGAGGTTTGTGTGTGAAGAGGTGGAGCAGAATGGTTCTAGTTTGAAGAAGAAGAGGAAGAGGGAGGTTTCGGGTGGGTTGGGAAAGAAGGCGTGGGGTTTTATTGGTAACCAGCTGGGGAAGTTGAGGGAAATGGAGGCTCGGTTTGAACAGCGTGAGGCGGAGAGAGAAAGGGAGAGACAGAGGAGTGAGGGTTTTAGAATGGAGTGTGAGCAAGAAAGGGAATGGAAATGGGAGGAATGGGTGAAGAAGAAGGAGGAGAGGGAAAAGGCAAGGGAGCAGTTGAGGAAGCAGAGGATGCAAGAATGGGAAGCGTTCGAGAAGGAGAGTGAGGAGAGAGAGAGAAGAAGAAGAGAAGAAGCGTTGATTCATGAGAGGGAATGGGAGGAGAGGATGAATAGGAGGAGGTCGGAATGGAAGAAGAGGATGGATGATATGTTGGGTCACCACCGGGCAGAGATGGGTCAGATGCAGTCTCGCATTCTTCATGAGCAGCAAAATCTTACAAGCCAGTTACTGGGGATTGTCTCTCAGTGGACTGCTCATCCAGCTGGACTGTCTGATCATACTGGTGCAAGCAACCATTACTTATCACAGATGATGCAGAATCTGCACCATGTGAATAGTTTGGATCATGACGATGCTAGGGTTGATGGAGATAATCAAGATGATCAGTTCATTGTCGACGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

388

Amino Acids

46.11

Weight (kDa)

6.54

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 228
AccB7I	CCANNNNNTGG	1 cut(s)	988
AccI	GTMKAC	1 cut(s)	1155
AciI	CCGC	6 cut(s)	8, 35, 226, 269, 288, 632
AclWI	GGATC	1 cut(s)	1110
AcsI	RAATTY	2 cut(s)	142, 433
AdeI	CACNNNGTG	1 cut(s)	1090
AfiI	CCNNNNNNNGG	2 cut(s)	291, 988
AgsI	TTSAA	4 cut(s)	121, 161, 517, 620
AjnI	CCWGG	1 cut(s)	87
AleI	CACNNNNGTG	1 cut(s)	212
AloI	GAACNNNNNNTCC	2 cut(s)	101, 133
AluBI	AGCT	2 cut(s)	586, 1022
AluI	AGCT	2 cut(s)	586, 1022
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	3 cut(s)	643, 951, 1003
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	1110
AlwNI	CAGNNNCTG	2 cut(s)	988, 1081
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	265, 964
ApoI	RAATTY	2 cut(s)	142, 433
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	45, 84
AsuC2I	CCSGG	1 cut(s)	923
AsuHPI	GGTGA	3 cut(s)	466, 727, 908
AvaII	GGWCC	2 cut(s)	45, 84
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	2 cut(s)	4, 228
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	277, 976
BccI	CCATC	9 cut(s)	64, 74, 328, 412, 458, 464, 892, 925, 1118
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	2 cut(s)	1033, 1141
BcnI	CCSGG	1 cut(s)	923
BcoDI	GTCTC	3 cut(s)	643, 951, 1003
BfaI	CTAG	3 cut(s)	105, 510, 1116
BisI	GCNGC	5 cut(s)	8, 227, 266, 269, 965
BlsI	GCNGC	5 cut(s)	9, 228, 267, 270, 966
Bme1390I	CCNGG	2 cut(s)	89, 923
Bme18I	GGWCC	2 cut(s)	45, 84
BmgT120I	GGNCC	2 cut(s)	45, 84
BmiI	GGNNCC	5 cut(s)	6, 47, 85, 86, 230
BmrFI	CCNGG	2 cut(s)	89, 923
BmrI	ACTGGG	1 cut(s)	998
BmsI	GCATC	4 cut(s)	759, 930, 1062, 1102
BmuI	ACTGGG	1 cut(s)	998
BpiI	GAAGAC	1 cut(s)	107
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpuEI	CTTGAG	1 cut(s)	385
BpuMI	CCSGG	1 cut(s)	923
BsaJI	CCNNGG	3 cut(s)	11, 87, 210
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 599, 629, 649, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 988
Bse1I	ACTGG	4 cut(s)	232, 982, 993, 1045
Bse3DI	GCAATG	2 cut(s)	126, 191
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	3 cut(s)	11, 87, 210
BseGI	GGATG	9 cut(s)	339, 451, 469, 475, 774, 870, 903, 907, 1015
BseLI	CCNNNNNNNGG	2 cut(s)	291, 988
BseMI	GCAATG	2 cut(s)	126, 191
BseMII	CTCAG	1 cut(s)	1016
BseNI	ACTGG	4 cut(s)	232, 982, 993, 1045
BseRI	GAGGAG	7 cut(s)	28, 335, 670, 743, 818, 872, 889
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	277, 976
BseYI	CCCAGC	1 cut(s)	586
BsgI	GTGCAG	2 cut(s)	236, 1067
BshNI	GGYRCC	2 cut(s)	4, 228
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	272, 285, 922
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	291, 988
BsmAI	GTCTC	3 cut(s)	643, 951, 1003
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	951
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	51, 255, 1033, 1102, 1141
BspACI	CCGC	6 cut(s)	8, 35, 226, 269, 288, 632
BspCNI	CTCAG	1 cut(s)	1015
BspHI	TCATGA	3 cut(s)	841, 958, 1105
BspLI	GGNNCC	5 cut(s)	6, 47, 85, 86, 230
BspPI	GGATC	1 cut(s)	1110
BspT107I	GGYRCC	2 cut(s)	4, 228
BsrDI	GCAATG	2 cut(s)	126, 191
BsrI	ACTGG	4 cut(s)	232, 982, 993, 1045
BssECI	CCNNGG	3 cut(s)	11, 87, 210
BssMI	GATC	5 cut(s)	51, 255, 1033, 1102, 1141
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	1029
Bst6I	CTCTTC	6 cut(s)	33, 483, 518, 524, 817, 887
BstAPI	GCANNNNNTGC	3 cut(s)	223, 769, 1081
BstC8I	GCNNGC	3 cut(s)	182, 397, 1048
BstDEI	CTNAG	2 cut(s)	93, 1002
BstEII	GGTNACC	2 cut(s)	578, 914
BstF5I	GGATG	9 cut(s)	339, 451, 469, 475, 774, 870, 903, 907, 1015
BstKTI	GATC	5 cut(s)	54, 258, 1036, 1105, 1144
BstMAI	GTCTC	3 cut(s)	643, 951, 1003
BstMBI	GATC	5 cut(s)	51, 255, 1033, 1102, 1141
BstMWI	GCNNNNNNNGC	4 cut(s)	223, 769, 1019, 1081
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	226
BstPI	GGTNACC	2 cut(s)	578, 914
BstSCI	CCNGG	2 cut(s)	87, 921
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	277, 976
BstV2I	GAAGAC	1 cut(s)	107
BtsCI	GGATG	9 cut(s)	339, 451, 469, 475, 774, 870, 903, 907, 1015
BtsIMutI	CAGTG	1 cut(s)	1010
Cac8I	GCNNGC	3 cut(s)	182, 397, 1048
CaiI	CAGNNNCTG	2 cut(s)	988, 1081
CciI	TCATGA	3 cut(s)	841, 958, 1105
Cfr13I	GGNCC	2 cut(s)	45, 84
CviAII	CATG	5 cut(s)	223, 842, 959, 1088, 1106
CviJI	RGCY	8 cut(s)	92, 268, 343, 356, 586, 611, 981, 1022
CviKI_1	RGCY	8 cut(s)	92, 268, 343, 356, 586, 611, 981, 1022
DdeI	CTNAG	2 cut(s)	93, 1002
DpnI	GATC	5 cut(s)	53, 257, 1035, 1104, 1143
DpnII	GATC	5 cut(s)	51, 255, 1033, 1102, 1141
DraIII	CACNNNGTG	1 cut(s)	1090
Eam1104I	CTCTTC	6 cut(s)	33, 483, 518, 524, 817, 887
EarI	CTCTTC	6 cut(s)	33, 483, 518, 524, 817, 887
EciI	GGCGGA	2 cut(s)	50, 647
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	45, 84
Eco91I	GGTNACC	2 cut(s)	578, 914
EcoO109I	RGGNCCY	2 cut(s)	45, 84
EcoO65I	GGTNACC	2 cut(s)	578, 914
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	5 cut(s)	226, 845, 962, 1091, 1109
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	5 cut(s)	222, 841, 958, 1087, 1105
FbaI	TGATCA	2 cut(s)	1033, 1141
FblI	GTMKAC	1 cut(s)	1155
Fnu4HI	GCNGC	5 cut(s)	8, 227, 266, 269, 965
FokI	GGATG	9 cut(s)	346, 458, 476, 482, 781, 877, 910, 914, 1002
Fsp4HI	GCNGC	5 cut(s)	8, 227, 266, 269, 965
FspBI	CTAG	3 cut(s)	105, 510, 1116
GluI	GCNGC	5 cut(s)	8, 227, 266, 269, 965
GsaI	CCCAGC	1 cut(s)	590
HapII	CCGG	3 cut(s)	272, 285, 922
Hin1II	CATG	5 cut(s)	226, 845, 962, 1091, 1109
HincII	GTYRAC	1 cut(s)	1156
HindII	GTYRAC	1 cut(s)	1156
HinfI	GANTC	2 cut(s)	838, 1078
HpaII	CCGG	3 cut(s)	272, 285, 922
HphI	GGTGA	3 cut(s)	466, 727, 908
Hpy166II	GTNNAC	3 cut(s)	151, 1008, 1156
Hpy188I	TCNGA	3 cut(s)	883, 939, 1033
Hpy188III	TCNNGA	8 cut(s)	161, 259, 364, 790, 842, 959, 1106, 1136
Hpy8I	GTNNAC	3 cut(s)	151, 1008, 1156
Hpy99I	CGWCG	1 cut(s)	1160
HpyAV	CCTTC	4 cut(s)	190, 553, 718, 787
HpyCH4III	ACNGT	1 cut(s)	1029
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	8 cut(s)	151, 173, 217, 772, 943, 1046, 1075, 1084
HpyF10VI	GCNNNNNNNGC	4 cut(s)	223, 769, 1019, 1081
HpyF3I	CTNAG	2 cut(s)	93, 1002
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	5 cut(s)	226, 845, 962, 1091, 1109
KflI	GGGWCCC	1 cut(s)	84
Ksp22I	TGATCA	2 cut(s)	1033, 1141
Kzo9I	GATC	5 cut(s)	51, 255, 1033, 1102, 1141
LmnI	GCTCC	2 cut(s)	496, 748
Lsp1109I	GCAGC	2 cut(s)	277, 976
LweI	GCATC	4 cut(s)	759, 930, 1062, 1102
MaeI	CTAG	3 cut(s)	105, 510, 1116
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	4 cut(s)	278, 578, 914, 984
MalI	GATC	5 cut(s)	53, 257, 1035, 1104, 1143
MboI	GATC	5 cut(s)	51, 255, 1033, 1102, 1141
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	3 cut(s)	142, 358, 433
MmeI	TCCRAC	1 cut(s)	861
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	3 cut(s)	212, 1041, 1110
MspA1I	CMGCKG	2 cut(s)	586, 1022
MspI	CCGG	3 cut(s)	272, 285, 922
MspR9I	CCNGG	2 cut(s)	89, 923
Mva1269I	GAATGC	1 cut(s)	951
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	4 cut(s)	223, 769, 1019, 1081
NciI	CCSGG	1 cut(s)	923
NdeII	GATC	5 cut(s)	51, 255, 1033, 1102, 1141
NlaIII	CATG	5 cut(s)	226, 845, 962, 1091, 1109
NlaIV	GGNNCC	5 cut(s)	6, 47, 85, 86, 230
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	914
NspI	RCATGY	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	212
PagI	TCATGA	3 cut(s)	841, 958, 1105
PctI	GAATGC	1 cut(s)	951
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	838, 1078
PflMI	CCANNNNNTGG	1 cut(s)	988
PkrI	GCNGC	5 cut(s)	9, 228, 267, 270, 966
PpuMI	RGGWCCY	2 cut(s)	45, 84
Psp5II	RGGWCCY	2 cut(s)	45, 84
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	2 cut(s)	578, 914
PspFI	CCCAGC	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	5 cut(s)	6, 47, 85, 86, 230
PspPI	GGNCC	2 cut(s)	45, 84
PspPPI	RGGWCCY	2 cut(s)	45, 84
PstNI	CAGNNNCTG	2 cut(s)	988, 1081
PvuII	CAGCTG	2 cut(s)	586, 1022
RseI	CAYNNNNRTG	3 cut(s)	212, 1041, 1110
SalI	GTCGAC	1 cut(s)	1154
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	5 cut(s)	8, 227, 266, 269, 965
Sau3AI	GATC	5 cut(s)	51, 255, 1033, 1102, 1141
Sau96I	GGNCC	2 cut(s)	45, 84
ScrFI	CCNGG	2 cut(s)	89, 923
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	4 cut(s)	759, 930, 1062, 1102
SinI	GGWCC	2 cut(s)	45, 84
SmiMI	CAYNNNNRTG	3 cut(s)	212, 1041, 1110
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	3 cut(s)	142, 358, 433
SsiI	CCGC	6 cut(s)	8, 35, 226, 269, 288, 632
SspMI	CTAG	3 cut(s)	105, 510, 1116
StyD4I	CCNGG	2 cut(s)	87, 921
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	1029
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	3 cut(s)	54, 789, 1155
TasI	AATT	3 cut(s)	142, 358, 433
TauI	GCSGC	3 cut(s)	10, 229, 271
TfiI	GAWTC	2 cut(s)	838, 1078
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	1010
TseFI	GTSAC	1 cut(s)	914
TseI	GCWGC	2 cut(s)	265, 964
Tsp45I	GTSAC	1 cut(s)	914
TspDTI	ATGAA	5 cut(s)	113, 830, 881, 947, 1138
TspGWI	ACGGA	2 cut(s)	44, 136
TspRI	CASTG	1 cut(s)	1010
Van91I	CCANNNNNTGG	1 cut(s)	988
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	45, 84
XapI	RAATTY	2 cut(s)	142, 433
XceI	RCATGY	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	1155
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	3 cut(s)	105, 510, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.