Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Reverse (-)

13098022 .. 13100138

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G163000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGATGCCCTCAAGAAGAAAGAAGTGGACAGAGGCCGAGGAGAGAACTCTGATTGACAAATACCGTGAGATGGTATCTGATGGGATGCTTGCTAAGATGAAAACCAGAGAGAAAAAGTTTAAACCCATTGCTTGTTATGTGAATTCCGTGCACCATGTTCAAGACCCAATTGCCTACCGTTGGCAGTGGTCTTGGAAGGATGTTTCCACCAAGGTCCAGAACATGAGGCACCAATATCTGCTTGTCAAGCAGAAGATCAAGAAACAACAACCCGACGGTGGTGCTAGCAGTGGTGGTGGTAGTGGGGAGTGTAGTGGGGAGGAGTTTGACTGGATGGAGGGCCTTACCCATTGGTCGAATTTCTTGAGATATAAGGAGGTTTTTGGGGATGTGGGGATCGTGAATAGCAATGGTAATGAACTGATGGCATCTGTGAATGGGGATGGTGAGAATGGTGGGGTGTTTGTGGGGAGTGGAAGGGGAATGGGGCTTGTGGATTTTGGGCAAATGGGCCATTCTGATGGGGATTTTGGGGCAGGGATTGATGGGGTTGAGAATGGAGTGATGGGTTTAGGATTTGAGTATGATGGGGAGGAGGGAGAGGAGAATTTTAATGGCAATGATCGGGTTAGGGAGGATGGAGATGACAGGTTTGTGTGCGAAGAAGTGGAGCAAAATGGTCGTAGTTTAAAGAAGAAGAAGAAGAAGAGGGAGGCGTCGATGGGGTTGGGAAAGAAGGCATGGGGATATCTAGGTAACCAACTAAGCAAGTTGAAGGAAATGGAGGCTCGGTTTGAGCAACGTGAGGCAGAGAGAGAACGGGACAGACAGAGGAGTGAGAGTTTTAGAATGGAGTGTGAGCATGAACGGGAATGGAAATGGGAGGAATGGGTAAATAAAAAGGAGGAGAAAGAAAAGACAAGGGAGAAGTTGAAGAAGCAGAGGATTCTAGAATGGGAAGCATTGGAGAAGGAGAGTGAAGAGAGAGAAAGAAGAAGAAAAGAGGAAGAGTTGATTCATGAGAGGGAATGGGAGGAGAGGATGGATAGGAGGAGATCAGAATGGAAGAAGAGGATTGACGAAATGTTGGGTCACCACCGCGCAGAGATGGGCCAGATGCAGACTCGTATTCTTCATGAGCAACAAAACCTTACAAGCCAGTTATTAGGGATTGTCTCTCAGTGGACTGCTCATCCAGCTGGACTGTCTGATCATACGAGTGCTAGTAACCATTATTTATCACAAATGATGCAGAATTTGCACCATGTGAATAGTTTGGTTCATGAGGATGCTAGGGTTGAGGGAGAAAATCAAGATGATCAATTCATTGTTGATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

447

Amino Acids

52.12

Weight (kDa)

5.84

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AccII	CGCG	1 cut(s)	1101
AciI	CCGC	1 cut(s)	1099
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	4 cut(s)	142, 358, 607, 1255
AcyI	GRCGYC	1 cut(s)	716
AdeI	CACNNNGTG	1 cut(s)	1267
AfiI	CCNNNNNNNGG	3 cut(s)	70, 180, 278
AgsI	TTSAA	3 cut(s)	161, 775, 934
AluBI	AGCT	1 cut(s)	1199
AluI	AGCT	1 cut(s)	1199
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	1180
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	4 cut(s)	33, 340, 511, 1111
ApaLI	GTGCAC	1 cut(s)	149
ApoI	RAATTY	4 cut(s)	142, 358, 607, 1255
AspLEI	GCGC	1 cut(s)	1103
AspS9I	GGNCC	4 cut(s)	214, 340, 511, 1111
AsuHPI	GGTGA	2 cut(s)	458, 1085
AsuNHI	GCTAGC	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	153
BcgI	CGANNNNNNTGC	4 cut(s)	263, 297, 662, 696
BclI	TGATCA	2 cut(s)	1210, 1318
BcoDI	GTCTC	1 cut(s)	1180
BfaI	CTAG	5 cut(s)	285, 752, 950, 1224, 1293
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	4 cut(s)	214, 340, 511, 1111
BmiI	GGNNCC	1 cut(s)	230
BmsI	GCATC	5 cut(s)	75, 437, 1107, 1239, 1279
BmtI	GCTAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	36, 210
BsaXI	ACNNNNNCTCC	4 cut(s)	776, 806, 826, 856
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 180, 278
Bse1I	ACTGG	2 cut(s)	335, 1159
Bse3DI	GCAATG	3 cut(s)	126, 415, 625
BseDI	CCNNGG	2 cut(s)	36, 210
BseGI	GGATG	9 cut(s)	90, 205, 339, 394, 448, 643, 1047, 1192, 1294
BseLI	CCNNNNNNNGG	3 cut(s)	70, 180, 278
BseMI	GCAATG	3 cut(s)	126, 415, 625
BseMII	CTCAG	1 cut(s)	1193
BseNI	ACTGG	2 cut(s)	335, 1159
BseRI	GAGGAG	8 cut(s)	53, 335, 608, 617, 847, 920, 1049, 1066
BseSI	GKGCMC	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	1101
BshFI	GGCC	4 cut(s)	35, 342, 513, 1113
BshNI	GGYRCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	836
BslI	CCNNNNNNNGG	3 cut(s)	70, 180, 278
BsmAI	GTCTC	1 cut(s)	1180
BsmFI	GGGAC	1 cut(s)	836
BsnI	GGCC	4 cut(s)	35, 342, 513, 1113
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	6 cut(s)	255, 396, 622, 1055, 1210, 1318
BspACI	CCGC	1 cut(s)	1099
BspANI	GGCC	4 cut(s)	35, 342, 513, 1113
BspCNI	CTCAG	1 cut(s)	1192
BspFNI	CGCG	1 cut(s)	1101
BspHI	TCATGA	3 cut(s)	1018, 1135, 1282
BspLI	GGNNCC	1 cut(s)	230
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	228
BsrDI	GCAATG	3 cut(s)	126, 415, 625
BsrI	ACTGG	2 cut(s)	335, 1159
BssECI	CCNNGG	2 cut(s)	36, 210
BssMI	GATC	6 cut(s)	255, 396, 622, 1055, 1210, 1318
BssNI	GRCGYC	1 cut(s)	716
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	4 cut(s)	65, 179, 278, 1206
Bst6I	CTCTTC	4 cut(s)	701, 975, 1002, 1064
BstACI	GRCGYC	1 cut(s)	716
BstAPI	GCANNNNNTGC	1 cut(s)	1258
BstC8I	GCNNGC	2 cut(s)	90, 286
BstDEI	CTNAG	3 cut(s)	93, 764, 1179
BstEII	GGTNACC	2 cut(s)	755, 1091
BstF5I	GGATG	9 cut(s)	90, 205, 339, 394, 448, 643, 1047, 1192, 1294
BstFNI	CGCG	1 cut(s)	1101
BstHHI	GCGC	1 cut(s)	1103
BstKTI	GATC	6 cut(s)	258, 399, 625, 1058, 1213, 1321
BstMAI	GTCTC	1 cut(s)	1180
BstMBI	GATC	6 cut(s)	255, 396, 622, 1055, 1210, 1318
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 1196, 1258
BstPI	GGTNACC	2 cut(s)	755, 1091
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	1 cut(s)	1101
BstXI	CCANNNNNNTGG	1 cut(s)	521
BsuRI	GGCC	4 cut(s)	35, 342, 513, 1113
BtsCI	GGATG	9 cut(s)	90, 205, 339, 394, 448, 643, 1047, 1192, 1294
BtsI	GCAGTG	2 cut(s)	191, 295
BtsIMutI	CAGTG	3 cut(s)	191, 295, 1187
Cac8I	GCNNGC	2 cut(s)	90, 286
CciI	TCATGA	3 cut(s)	1018, 1135, 1282
CfoI	GCGC	1 cut(s)	1103
Cfr13I	GGNCC	4 cut(s)	214, 340, 511, 1111
CseI	GACGC	1 cut(s)	705
CviAII	CATG	8 cut(s)	155, 223, 741, 863, 1019, 1136, 1265, 1283
CviJI	RGCY	8 cut(s)	35, 342, 490, 513, 788, 1113, 1158, 1199
CviKI_1	RGCY	8 cut(s)	35, 342, 490, 513, 788, 1113, 1158, 1199
DdeI	CTNAG	3 cut(s)	93, 764, 1179
DpnI	GATC	6 cut(s)	257, 398, 624, 1057, 1212, 1320
DpnII	GATC	6 cut(s)	255, 396, 622, 1055, 1210, 1318
DraI	TTTAAA	2 cut(s)	121, 690
DraIII	CACNNNGTG	1 cut(s)	1267
Eam1104I	CTCTTC	4 cut(s)	701, 975, 1002, 1064
EarI	CTCTTC	4 cut(s)	701, 975, 1002, 1064
Eco130I	CCWWGG	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	214
Eco91I	GGTNACC	2 cut(s)	755, 1091
EcoO109I	RGGNCCY	1 cut(s)	340
EcoO65I	GGTNACC	2 cut(s)	755, 1091
EcoRI	GAATTC	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	749
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	8 cut(s)	158, 226, 744, 866, 1022, 1139, 1268, 1286
FaqI	GGGAC	1 cut(s)	836
FatI	CATG	8 cut(s)	154, 222, 740, 862, 1018, 1135, 1264, 1282
FbaI	TGATCA	2 cut(s)	1210, 1318
FokI	GGATG	9 cut(s)	97, 212, 346, 401, 455, 650, 1054, 1179, 1301
FspBI	CTAG	5 cut(s)	285, 752, 950, 1224, 1293
GlaI	GCGC	1 cut(s)	1102
HaeIII	GGCC	4 cut(s)	35, 342, 513, 1113
HgaI	GACGC	1 cut(s)	705
HhaI	GCGC	1 cut(s)	1103
Hin1I	GRCGYC	1 cut(s)	716
Hin1II	CATG	8 cut(s)	158, 226, 744, 866, 1022, 1139, 1268, 1286
Hin6I	GCGC	1 cut(s)	1101
HinP1I	GCGC	1 cut(s)	1101
HinfI	GANTC	3 cut(s)	946, 1015, 1123
HphI	GGTGA	2 cut(s)	458, 1085
Hpy166II	GTNNAC	3 cut(s)	27, 151, 1185
Hpy188I	TCNGA	5 cut(s)	51, 79, 520, 1060, 1210
Hpy8I	GTNNAC	3 cut(s)	27, 151, 1185
Hpy99I	CGWCG	2 cut(s)	278, 721
HpyAV	CCTTC	5 cut(s)	190, 471, 730, 769, 964
HpyCH4III	ACNGT	4 cut(s)	65, 179, 278, 1206
HpyCH4IV	ACGT	1 cut(s)	802
HpyCH4V	TGCA	4 cut(s)	151, 1120, 1252, 1261
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 1196, 1258
HpyF3I	CTNAG	3 cut(s)	93, 764, 1179
HpySE526I	ACGT	1 cut(s)	802
Hsp92I	GRCGYC	1 cut(s)	716
Hsp92II	CATG	8 cut(s)	158, 226, 744, 866, 1022, 1139, 1268, 1286
HspAI	GCGC	1 cut(s)	1101
Ksp22I	TGATCA	2 cut(s)	1210, 1318
Kzo9I	GATC	6 cut(s)	255, 396, 622, 1055, 1210, 1318
LmnI	GCTCC	1 cut(s)	670
LpnPI	CCDG	9 cut(s)	118, 230, 316, 522, 634, 1127, 1172, 1185, 1209
LweI	GCATC	5 cut(s)	75, 437, 1107, 1239, 1279
MaeI	CTAG	5 cut(s)	285, 752, 950, 1224, 1293
MaeII	ACGT	1 cut(s)	802
MaeIII	GTNAC	3 cut(s)	755, 1091, 1226
MalI	GATC	6 cut(s)	257, 398, 624, 1057, 1212, 1320
MboI	GATC	6 cut(s)	255, 396, 622, 1055, 1210, 1318
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	6 cut(s)	142, 168, 358, 607, 1255, 1322
MlyI	GAGTC	1 cut(s)	1117
MseI	TTAA	3 cut(s)	120, 612, 689
MslI	CAYNNNNRTG	3 cut(s)	519, 1218, 1287
MspA1I	CMGCKG	1 cut(s)	1199
MssI	GTTTAAAC	1 cut(s)	121
MunI	CAATTG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	1101
MwoI	GCNNNNNNNGC	3 cut(s)	247, 1196, 1258
NdeII	GATC	6 cut(s)	255, 396, 622, 1055, 1210, 1318
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	8 cut(s)	158, 226, 744, 866, 1022, 1139, 1268, 1286
NlaIV	GGNNCC	1 cut(s)	230
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	1091
PagI	TCATGA	3 cut(s)	1018, 1135, 1282
PfeI	GAWTC	2 cut(s)	946, 1015
PleI	GAGTC	1 cut(s)	1117
PmeI	GTTTAAAC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	1117
PspEI	GGTNACC	2 cut(s)	755, 1091
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	4 cut(s)	214, 340, 511, 1111
PvuII	CAGCTG	1 cut(s)	1199
RseI	CAYNNNNRTG	3 cut(s)	519, 1218, 1287
SaqAI	TTAA	3 cut(s)	120, 612, 689
Sau3AI	GATC	6 cut(s)	255, 396, 622, 1055, 1210, 1318
Sau96I	GGNCC	4 cut(s)	214, 340, 511, 1111
SchI	GAGTC	1 cut(s)	1117
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	7 cut(s)	216, 381, 653, 757, 805, 1152, 1201
SfaNI	GCATC	5 cut(s)	75, 437, 1107, 1239, 1279
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	3 cut(s)	519, 1218, 1287
SmlI	CTYRAG	2 cut(s)	10, 364
SmoI	CTYRAG	2 cut(s)	10, 364
Sse9I	AATT	6 cut(s)	142, 168, 358, 607, 1255, 1322
SsiI	CCGC	1 cut(s)	1099
SspMI	CTAG	5 cut(s)	285, 752, 950, 1224, 1293
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	4 cut(s)	65, 179, 278, 1206
TaiI	ACGT	1 cut(s)	805
TaqI	TCGA	2 cut(s)	356, 719
TasI	AATT	6 cut(s)	142, 168, 358, 607, 1255, 1322
TfiI	GAWTC	2 cut(s)	946, 1015
Tru1I	TTAA	3 cut(s)	120, 612, 689
Tru9I	TTAA	3 cut(s)	120, 612, 689
TscAI	CASTG	3 cut(s)	191, 295, 1187
TseFI	GTSAC	1 cut(s)	1091
Tsp45I	GTSAC	1 cut(s)	1091
TspDTI	ATGAA	7 cut(s)	113, 432, 879, 1007, 1124, 1271, 1315
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	3 cut(s)	191, 295, 1187
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	4 cut(s)	142, 358, 607, 1255
XbaI	TCTAGA	1 cut(s)	949
XspI	CTAG	5 cut(s)	285, 752, 950, 1224, 1293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.