Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008092.1

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Reverse (-)

13395 .. 14609

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008092.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggtgcccccaagaagaaagaaatggacggaggccgaggagaggactctgatcgataaatacggggagatggtggctgatgggaccctggctaagatgaagaccagagagaagaagttcaaacccattgcttattatgtgaattctgtgcactatgttcaggaccctgttgcctatcgctggcaatggtcgtggaaagatgtgtccactaaggtccagaacatgaggcaccagtatctgcttgtcaagcagaagattaagaagcagcagccgccggagagtaattccggcggcggcggtggggatagtagtggggagtgcagtgtggaggagtttgattggatggaggggcttacacattgggctaatttcttgaggtataaggaggtttttggggatattgtgggtagtaatgggaatgatttgatggggggtggaaatggggattgtgagaatgttggggggtttgtggggggtgggaggggaatggagatttcggagtttgggcagatgggacattcggatggggatttcgggggagggattgataatgggatgatggggttggggtttgagtatgatggggaggagggaggggagaattttaatggggatgttaggatgagggaggatggagatgggaggtttgtgtgtgaggaagtggagcagaatggttctagtttaaagaagaagaggaagagggaggtttcgaccgcgttgggaaagaaggcgtgggcttttatcggtaaccagctgggaaagttgagggaaatggaggctcggtttgaacagcgtgaggcggagagggaaagggtgagacagaggagtgagagttttagaatggagtgtgagcaagaacgggaatggaaatgggaggaatgggtgaagaagcaggaggagaaagaaaaggcaagggagcagttgaagaagcagaggattcaagaatgggaagcattcgagaaggacagtgaggagagagagagaagaagaagagaagaagcattgattcatgagagggaatgggaggagaggatggatgatctgttggcctgttgggtcaccaccgggcagagatgggccaaatgcagactcgcattctccatgagcagcaaaatcttacgagccagttattggggattgtctctcagtggactgctcatccagctggactgtctgatcataccggtgcaagcaaccattatttatcacagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

404

Amino Acids

46.94

Weight (kDa)

5.93

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 228
AccB7I	CCANNNNNTGG	1 cut(s)	1131
AccII	CGCG	1 cut(s)	716
AciI	CCGC	6 cut(s)	272, 291, 294, 297, 714, 800
AcsI	RAATTY	2 cut(s)	142, 601
AfiI	CCNNNNNNNGG	3 cut(s)	42, 180, 1131
AgeI	ACCGGT	1 cut(s)	1183
AgsI	TTSAA	4 cut(s)	121, 788, 925, 941
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	2 cut(s)	754, 1165
AluI	AGCT	2 cut(s)	754, 1165
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	811, 1146
Alw44I	GTGCAC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	238
AoxI	GGCC	3 cut(s)	33, 1047, 1077
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	265, 268, 1107
ApoI	RAATTY	2 cut(s)	142, 601
AsiGI	ACCGGT	1 cut(s)	1183
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	4 cut(s)	84, 163, 214, 1077
AsuC2I	CCSGG	1 cut(s)	1066
AsuHPI	GGTGA	3 cut(s)	826, 895, 1051
AvaII	GGWCC	3 cut(s)	84, 163, 214
BaeGI	GKGCMC	2 cut(s)	9, 153
BanI	GGYRCC	2 cut(s)	4, 228
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	277, 280, 1119
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	1176
BcnI	CCSGG	1 cut(s)	1066
BcoDI	GTCTC	2 cut(s)	811, 1146
BfaI	CTAG	1 cut(s)	678
BisI	GCNGC	6 cut(s)	266, 269, 272, 292, 295, 1108
BlsI	GCNGC	6 cut(s)	267, 270, 273, 293, 296, 1109
Bme1390I	CCNGG	2 cut(s)	89, 1066
Bme18I	GGWCC	3 cut(s)	84, 163, 214
BmgT120I	GGNCC	4 cut(s)	84, 163, 214, 1077
BmiI	GGNNCC	5 cut(s)	6, 85, 86, 165, 230
BmrFI	CCNGG	2 cut(s)	89, 1066
BpiI	GAAGAC	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	1066
Bsa29I	ATCGAT	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	36, 87
BsaWI	WCCGGW	1 cut(s)	1183
BsaXI	ACNNNNNCTCC	4 cut(s)	767, 797, 817, 847
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 180, 1131
Bse118I	RCCGGY	1 cut(s)	1183
Bse1I	ACTGG	2 cut(s)	232, 1125
Bse3DI	GCAATG	2 cut(s)	126, 191
BseBI	CCWGG	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	36, 87
BseGI	GGATG	9 cut(s)	348, 529, 561, 619, 627, 637, 1038, 1042, 1158
BseLI	CCNNNNNNNGG	3 cut(s)	42, 180, 1131
BseMI	GCAATG	2 cut(s)	126, 191
BseMII	CTCAG	1 cut(s)	1159
BseNI	ACTGG	2 cut(s)	232, 1125
BseRI	GAGGAG	7 cut(s)	53, 344, 602, 838, 911, 986, 1040
BseSI	GKGCMC	2 cut(s)	9, 153
BseXI	GCAGC	3 cut(s)	277, 280, 1119
BseYI	CCCAGC	1 cut(s)	754
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	716
Bsh1285I	CGRYCG	1 cut(s)	714
BshFI	GGCC	3 cut(s)	35, 1049, 1079
BshNI	GGYRCC	2 cut(s)	4, 228
BshTI	ACCGGT	1 cut(s)	1183
BshVI	ATCGAT	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	4 cut(s)	275, 288, 1065, 1184
BslFI	GGGAC	2 cut(s)	97, 528
BslI	CCNNNNNNNGG	3 cut(s)	42, 180, 1131
BsmAI	GTCTC	2 cut(s)	811, 1146
BsmFI	GGGAC	2 cut(s)	97, 528
BsmI	GAATGC	2 cut(s)	953, 1094
BsnI	GGCC	3 cut(s)	35, 1049, 1079
Bsp1286I	GDGCHC	2 cut(s)	9, 153
Bsp143I	GATC	3 cut(s)	51, 1039, 1176
BspACI	CCGC	6 cut(s)	272, 291, 294, 297, 714, 800
BspANI	GGCC	3 cut(s)	35, 1049, 1079
BspCNI	CTCAG	1 cut(s)	1158
BspDI	ATCGAT	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	716
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	5 cut(s)	6, 85, 86, 165, 230
BspT107I	GGYRCC	2 cut(s)	4, 228
BsrDI	GCAATG	2 cut(s)	126, 191
BsrFI	RCCGGY	1 cut(s)	1183
BsrI	ACTGG	2 cut(s)	232, 1125
BssAI	RCCGGY	1 cut(s)	1183
BssECI	CCNNGG	2 cut(s)	36, 87
BssMI	GATC	3 cut(s)	51, 1039, 1176
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	968, 1172
Bst6I	CTCTTC	3 cut(s)	686, 692, 985
BstC8I	GCNNGC	2 cut(s)	182, 1191
BstDEI	CTNAG	3 cut(s)	93, 210, 1145
BstEII	GGTNACC	2 cut(s)	746, 1057
BstF5I	GGATG	9 cut(s)	348, 529, 561, 619, 627, 637, 1038, 1042, 1158
BstFNI	CGCG	1 cut(s)	716
BstKTI	GATC	3 cut(s)	54, 1042, 1179
BstMAI	GTCTC	2 cut(s)	811, 1146
BstMBI	GATC	3 cut(s)	51, 1039, 1176
BstMCI	CGRYCG	1 cut(s)	714
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 271, 1162
BstNI	CCWGG	1 cut(s)	89
BstPI	GGTNACC	2 cut(s)	746, 1057
BstSCI	CCNGG	2 cut(s)	87, 1064
BstSLI	GKGCMC	2 cut(s)	9, 153
BstUI	CGCG	1 cut(s)	716
BstV1I	GCAGC	3 cut(s)	277, 280, 1119
BstV2I	GAAGAC	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	35, 1049, 1079
BsuTUI	ATCGAT	1 cut(s)	54
BtsCI	GGATG	9 cut(s)	348, 529, 561, 619, 627, 637, 1038, 1042, 1158
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	328, 973, 1153
Cac8I	GCNNGC	2 cut(s)	182, 1191
CaiI	CAGNNNCTG	1 cut(s)	238
CciI	TCATGA	1 cut(s)	1009
Cfr10I	RCCGGY	1 cut(s)	1183
Cfr13I	GGNCC	4 cut(s)	84, 163, 214, 1077
ClaI	ATCGAT	1 cut(s)	54
CspAI	ACCGGT	1 cut(s)	1183
CspCI	CAANNNNNGTGG	2 cut(s)	173, 208
CviAII	CATG	3 cut(s)	223, 1010, 1102
DdeI	CTNAG	3 cut(s)	93, 210, 1145
DpnI	GATC	3 cut(s)	53, 1041, 1178
DpnII	GATC	3 cut(s)	51, 1039, 1176
DraI	TTTAAA	1 cut(s)	684
Eam1104I	CTCTTC	3 cut(s)	686, 692, 985
EarI	CTCTTC	3 cut(s)	686, 692, 985
EciI	GGCGGA	1 cut(s)	815
Eco47I	GGWCC	3 cut(s)	84, 163, 214
Eco91I	GGTNACC	2 cut(s)	746, 1057
EcoO109I	RGGNCCY	2 cut(s)	84, 163
EcoO65I	GGTNACC	2 cut(s)	746, 1057
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	226, 1013, 1105
FaiI	YATR	8 cut(s)	138, 156, 224, 381, 579, 1011, 1103, 1181
FaqI	GGGAC	2 cut(s)	97, 528
FatI	CATG	3 cut(s)	222, 1009, 1101
FbaI	TGATCA	1 cut(s)	1176
Fnu4HI	GCNGC	6 cut(s)	266, 269, 272, 292, 295, 1108
FokI	GGATG	9 cut(s)	355, 536, 568, 626, 634, 644, 1045, 1049, 1145
Fsp4HI	GCNGC	6 cut(s)	266, 269, 272, 292, 295, 1108
FspBI	CTAG	1 cut(s)	678
GluI	GCNGC	6 cut(s)	266, 269, 272, 292, 295, 1108
GsaI	CCCAGC	1 cut(s)	758
HaeIII	GGCC	3 cut(s)	35, 1049, 1079
HapII	CCGG	4 cut(s)	275, 288, 1065, 1184
Hin1II	CATG	3 cut(s)	226, 1013, 1105
HinfI	GANTC	4 cut(s)	46, 937, 1006, 1089
HpaII	CCGG	4 cut(s)	275, 288, 1065, 1184
HphI	GGTGA	3 cut(s)	826, 895, 1051
Hpy166II	GTNNAC	3 cut(s)	151, 207, 1151
Hpy188I	TCNGA	4 cut(s)	51, 499, 523, 1176
Hpy188III	TCNNGA	6 cut(s)	161, 217, 373, 941, 958, 1010
Hpy8I	GTNNAC	3 cut(s)	151, 207, 1151
HpyAV	CCTTC	2 cut(s)	721, 955
HpyCH4III	ACNGT	2 cut(s)	968, 1172
HpyCH4V	TGCA	4 cut(s)	151, 321, 1086, 1189
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 271, 1162
HpyF3I	CTNAG	3 cut(s)	93, 210, 1145
Hsp92II	CATG	3 cut(s)	226, 1013, 1105
KflI	GGGWCCC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	1176
Kzo9I	GATC	3 cut(s)	51, 1039, 1176
LmnI	GCTCC	2 cut(s)	664, 916
Lsp1109I	GCAGC	3 cut(s)	277, 280, 1119
MaeI	CTAG	1 cut(s)	678
MaeIII	GTNAC	2 cut(s)	746, 1057
MalI	GATC	3 cut(s)	53, 1041, 1178
MboI	GATC	3 cut(s)	51, 1039, 1176
MhlI	GDGCHC	2 cut(s)	9, 153
MluCI	AATT	4 cut(s)	142, 283, 367, 601
MlyI	GAGTC	2 cut(s)	40, 1083
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	3 cut(s)	258, 606, 683
MslI	CAYNNNNRTG	2 cut(s)	522, 1184
MspA1I	CMGCKG	2 cut(s)	754, 1165
MspI	CCGG	4 cut(s)	275, 288, 1065, 1184
MspR9I	CCNGG	2 cut(s)	89, 1066
Mva1269I	GAATGC	2 cut(s)	953, 1094
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	3 cut(s)	247, 271, 1162
NciI	CCSGG	1 cut(s)	1066
NdeII	GATC	3 cut(s)	51, 1039, 1176
NlaIII	CATG	3 cut(s)	226, 1013, 1105
NlaIV	GGNNCC	5 cut(s)	6, 85, 86, 165, 230
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	1057
PagI	TCATGA	1 cut(s)	1009
PctI	GAATGC	2 cut(s)	953, 1094
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	937, 1006
PflMI	CCANNNNNTGG	1 cut(s)	1131
PinAI	ACCGGT	1 cut(s)	1183
PkrI	GCNGC	6 cut(s)	267, 270, 273, 293, 296, 1109
PleI	GAGTC	2 cut(s)	40, 1083
PpsI	GAGTC	2 cut(s)	40, 1083
PpuMI	RGGWCCY	2 cut(s)	84, 163
Psp5II	RGGWCCY	2 cut(s)	84, 163
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	2 cut(s)	746, 1057
PspFI	CCCAGC	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	5 cut(s)	6, 85, 86, 165, 230
PspPI	GGNCC	4 cut(s)	84, 163, 214, 1077
PspPPI	RGGWCCY	2 cut(s)	84, 163
PstNI	CAGNNNCTG	1 cut(s)	238
PvuII	CAGCTG	2 cut(s)	754, 1165
RseI	CAYNNNNRTG	2 cut(s)	522, 1184
SaqAI	TTAA	3 cut(s)	258, 606, 683
SatI	GCNGC	6 cut(s)	266, 269, 272, 292, 295, 1108
Sau3AI	GATC	3 cut(s)	51, 1039, 1176
Sau96I	GGNCC	4 cut(s)	84, 163, 214, 1077
SchI	GAGTC	2 cut(s)	40, 1083
ScrFI	CCNGG	2 cut(s)	89, 1066
SduI	GDGCHC	2 cut(s)	9, 153
SetI	ASST	7 cut(s)	216, 380, 390, 647, 708, 756, 1167
SinI	GGWCC	3 cut(s)	84, 163, 214
SmiMI	CAYNNNNRTG	2 cut(s)	522, 1184
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	4 cut(s)	142, 283, 367, 601
SsiI	CCGC	6 cut(s)	272, 291, 294, 297, 714, 800
SspMI	CTAG	1 cut(s)	678
StyD4I	CCNGG	2 cut(s)	87, 1064
TaaI	ACNGT	2 cut(s)	968, 1172
TaqI	TCGA	3 cut(s)	54, 710, 957
TasI	AATT	4 cut(s)	142, 283, 367, 601
TauI	GCSGC	3 cut(s)	274, 294, 297
TfiI	GAWTC	2 cut(s)	937, 1006
Tru1I	TTAA	3 cut(s)	258, 606, 683
Tru9I	TTAA	3 cut(s)	258, 606, 683
TscAI	CASTG	3 cut(s)	328, 973, 1153
TseFI	GTSAC	1 cut(s)	1057
TseI	GCWGC	3 cut(s)	265, 268, 1107
Tsp45I	GTSAC	1 cut(s)	1057
TspDTI	ATGAA	2 cut(s)	113, 998
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	3 cut(s)	328, 973, 1153
Van91I	CCANNNNNTGG	1 cut(s)	1131
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	3 cut(s)	84, 163, 214
XapI	RAATTY	2 cut(s)	142, 601
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.