Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Forward (+)

35400363 .. 35402263

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGTGCCCCCAAGAAGAAAGAAATGGACGGAGGCCGAGGAGAGGACTCTGATTGATAAATACGGGGAGATGGTGGCTGATGGGACCCTGGCTAAGATGAAGACTAGAGAGAAAAAGTTCAAACCCATTGCTTATTATGTGAATTCTGTGCACTATGTTCAAGACCCTGTTGCCTACCGCTGGCAATGGTCGTGGAAAGATGTGTCCACCAAGGTGCAGAACATGAGGCACCAGTATCTGCTTGTCAAGCAGAAGATTAAGAAGCAGCAGCCGCCGGAGAGTAATTCCGGCGGCGGCTGCGGTGGGGATAGTAGTGGGGAGTGTAGTGTGGAGGAGTTTGATTGGATGGAGGGGCTTACACATTGGGCTAATTTCTTGAGGTATAAGGAGGTTTTTGGGGATATTGTGGGTAGTAATGGGAATGATTTGATGGGGGGTGGAAATGGGGATTGTGAGAATGTTGGGGGGTTTGTGGGGGGTGGGAGGGGGATGGAGATTTCGGAGTTTGGGCAAATGGGACACTCGGATGGGGATTTCGGGGGAGGGATTGATAATGGGATGATGGGGTTGGGGTTTGAGTATGATGGGGAGGAGGGAGGGGAGAATTTTAATGGGGATGGTAGGATGAGGGAGGATGGAGATGGGAGGTTTGTGTGTGAAGAAGTGGAGCAGAATGGTTCTAGTTTAAAGAAGAAGAGGAAGAGGGAGGTTTCAACTGCGTTGGGAAAGAAGACGTGGGCTTTTATTGGTAACCAGCTGGGAAAGTTGAGGGAAATGGAGGCTCGGTTTGAACAGCGTGAGGCGGAGAGGGAAAGGGAGAGACAGAGGATTGAGAGTTTTAGAATGGAGTGTGAGCAAGAACGGGAATGGAAATGGGAGGAATGGGTGAAGAAGAAGGAGGAGAAAGAAAAGGGAAGGGAGCAGTTGAAGAAGCAGAGGATTCAAGAATGGGAAGCATTCGAGAAGGACAGTGAGGAGAGAGAGAGAAGAAGAAGAGAAGAAGCGTTGATTCATGAGAGGGAATGGGAGGAGAGGATGAATAGGAGGAGGTCAGAATGGAAGAAGAGGATGGATGATATGTTGGGTCACCACCGGGCAGAGATGGGCCAAATGCAGACTCGCATTCTCCATGAGCAGCAAAATCTTACGAGCCAGTTATTGGGGATTGTCTCTCAGTGGACTGCTCATCCAGCTGGACTGTCTGATCATACCGGTGCAAGCAACCATTATTTATCACAGATGATGCAGAATTTGCACCATGTGAATAGTTTGGATCATGACGATGCTAGGGTTGATGGAGATAATCAAGATGATCAGTTCATTGTTGACGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

444

Amino Acids

51.69

Weight (kDa)

5.68

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 228
AccB7I	CCANNNNNTGG	1 cut(s)	1159
AciI	CCGC	6 cut(s)	178, 272, 291, 294, 300, 803
AclWI	GGATC	1 cut(s)	1281
AcsI	RAATTY	3 cut(s)	142, 604, 1249
AdeI	CACNNNGTG	1 cut(s)	1261
AfiI	CCNNNNNNNGG	3 cut(s)	42, 180, 1159
AgeI	ACCGGT	1 cut(s)	1211
AgsI	TTSAA	6 cut(s)	121, 161, 714, 791, 928, 944
AjiI	CACGTC	1 cut(s)	735
AjnI	CCWGG	1 cut(s)	87
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	2 cut(s)	757, 1193
AluI	AGCT	2 cut(s)	757, 1193
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	814, 1174
Alw44I	GTGCAC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	1281
AlwNI	CAGNNNCTG	1 cut(s)	238
AoxI	GGCC	2 cut(s)	33, 1105
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	265, 268, 297, 1135
ApoI	RAATTY	3 cut(s)	142, 604, 1249
AsiGI	ACCGGT	1 cut(s)	1211
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	84, 1105
AsuC2I	CCSGG	1 cut(s)	1094
AsuHPI	GGTGA	2 cut(s)	898, 1079
AvaII	GGWCC	1 cut(s)	84
BaeGI	GKGCMC	2 cut(s)	9, 153
BanI	GGYRCC	2 cut(s)	4, 228
BbsI	GAAGAC	2 cut(s)	107, 737
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	4 cut(s)	277, 280, 284, 1147
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	2 cut(s)	1204, 1312
BcnI	CCSGG	1 cut(s)	1094
BcoDI	GTCTC	2 cut(s)	814, 1174
BfaI	CTAG	3 cut(s)	105, 681, 1287
BisI	GCNGC	7 cut(s)	266, 269, 272, 292, 295, 298, 1136
BlsI	GCNGC	7 cut(s)	267, 270, 273, 293, 296, 299, 1137
Bme1390I	CCNGG	2 cut(s)	89, 1094
Bme18I	GGWCC	1 cut(s)	84
BmgBI	CACGTC	1 cut(s)	735
BmgT120I	GGNCC	2 cut(s)	84, 1105
BmiI	GGNNCC	4 cut(s)	6, 85, 86, 230
BmrFI	CCNGG	2 cut(s)	89, 1094
BmsI	GCATC	2 cut(s)	1233, 1273
BpiI	GAAGAC	2 cut(s)	107, 737
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	1094
BsaJI	CCNNGG	3 cut(s)	36, 87, 210
BsaWI	WCCGGW	1 cut(s)	1211
BsaXI	ACNNNNNCTCC	2 cut(s)	770, 800
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 180, 1159
Bse118I	RCCGGY	1 cut(s)	1211
Bse1I	ACTGG	2 cut(s)	232, 1153
Bse3DI	GCAATG	2 cut(s)	126, 191
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	3 cut(s)	36, 87, 210
BseLI	CCNNNNNNNGG	3 cut(s)	42, 180, 1159
BseMI	GCAATG	2 cut(s)	126, 191
BseMII	CTCAG	1 cut(s)	1187
BseNI	ACTGG	2 cut(s)	232, 1153
BseRI	GAGGAG	7 cut(s)	53, 347, 605, 914, 989, 1043, 1060
BseSI	GKGCMC	2 cut(s)	9, 153
BseXI	GCAGC	4 cut(s)	277, 280, 284, 1147
BseYI	CCCAGC	1 cut(s)	757
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	35, 1107
BshNI	GGYRCC	2 cut(s)	4, 228
BshTI	ACCGGT	1 cut(s)	1211
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	4 cut(s)	275, 288, 1093, 1212
BslFI	GGGAC	2 cut(s)	97, 531
BslI	CCNNNNNNNGG	3 cut(s)	42, 180, 1159
BsmAI	GTCTC	2 cut(s)	814, 1174
BsmFI	GGGAC	2 cut(s)	97, 531
BsmI	GAATGC	2 cut(s)	956, 1122
BsnI	GGCC	2 cut(s)	35, 1107
Bsp1286I	GDGCHC	2 cut(s)	9, 153
Bsp143I	GATC	3 cut(s)	1204, 1273, 1312
BspACI	CCGC	6 cut(s)	178, 272, 291, 294, 300, 803
BspANI	GGCC	2 cut(s)	35, 1107
BspCNI	CTCAG	1 cut(s)	1186
BspHI	TCATGA	2 cut(s)	1012, 1276
BspLI	GGNNCC	4 cut(s)	6, 85, 86, 230
BspPI	GGATC	1 cut(s)	1281
BspT107I	GGYRCC	2 cut(s)	4, 228
BsrDI	GCAATG	2 cut(s)	126, 191
BsrFI	RCCGGY	1 cut(s)	1211
BsrI	ACTGG	2 cut(s)	232, 1153
BssAI	RCCGGY	1 cut(s)	1211
BssECI	CCNNGG	3 cut(s)	36, 87, 210
BssMI	GATC	3 cut(s)	1204, 1273, 1312
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	971, 1200
Bst6I	CTCTTC	4 cut(s)	689, 695, 988, 1058
BstAPI	GCANNNNNTGC	1 cut(s)	1252
BstC8I	GCNNGC	2 cut(s)	182, 1219
BstDEI	CTNAG	2 cut(s)	93, 1173
BstEII	GGTNACC	2 cut(s)	749, 1085
BstKTI	GATC	3 cut(s)	1207, 1276, 1315
BstMAI	GTCTC	2 cut(s)	814, 1174
BstMBI	GATC	3 cut(s)	1204, 1273, 1312
BstMWI	GCNNNNNNNGC	5 cut(s)	247, 271, 297, 1190, 1252
BstNI	CCWGG	1 cut(s)	89
BstPI	GGTNACC	2 cut(s)	749, 1085
BstSCI	CCNGG	2 cut(s)	87, 1092
BstSLI	GKGCMC	2 cut(s)	9, 153
BstV1I	GCAGC	4 cut(s)	277, 280, 284, 1147
BstV2I	GAAGAC	2 cut(s)	107, 737
BsuRI	GGCC	2 cut(s)	35, 1107
BtrI	CACGTC	1 cut(s)	735
BtsIMutI	CAGTG	2 cut(s)	976, 1181
Cac8I	GCNNGC	2 cut(s)	182, 1219
CaiI	CAGNNNCTG	1 cut(s)	238
CciI	TCATGA	2 cut(s)	1012, 1276
Cfr10I	RCCGGY	1 cut(s)	1211
Cfr13I	GGNCC	2 cut(s)	84, 1105
CspAI	ACCGGT	1 cut(s)	1211
CspCI	CAANNNNNGTGG	2 cut(s)	173, 208
CviAII	CATG	5 cut(s)	223, 1013, 1130, 1259, 1277
DdeI	CTNAG	2 cut(s)	93, 1173
DpnI	GATC	3 cut(s)	1206, 1275, 1314
DpnII	GATC	3 cut(s)	1204, 1273, 1312
DraI	TTTAAA	1 cut(s)	687
DraIII	CACNNNGTG	1 cut(s)	1261
Eam1104I	CTCTTC	4 cut(s)	689, 695, 988, 1058
EarI	CTCTTC	4 cut(s)	689, 695, 988, 1058
EciI	GGCGGA	1 cut(s)	818
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	84
Eco91I	GGTNACC	2 cut(s)	749, 1085
EcoO109I	RGGNCCY	1 cut(s)	84
EcoO65I	GGTNACC	2 cut(s)	749, 1085
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	5 cut(s)	226, 1016, 1133, 1262, 1280
FaqI	GGGAC	2 cut(s)	97, 531
FatI	CATG	5 cut(s)	222, 1012, 1129, 1258, 1276
FbaI	TGATCA	2 cut(s)	1204, 1312
Fnu4HI	GCNGC	7 cut(s)	266, 269, 272, 292, 295, 298, 1136
Fsp4HI	GCNGC	7 cut(s)	266, 269, 272, 292, 295, 298, 1136
FspBI	CTAG	3 cut(s)	105, 681, 1287
GluI	GCNGC	7 cut(s)	266, 269, 272, 292, 295, 298, 1136
GsaI	CCCAGC	1 cut(s)	761
HaeIII	GGCC	2 cut(s)	35, 1107
HapII	CCGG	4 cut(s)	275, 288, 1093, 1212
Hin1II	CATG	5 cut(s)	226, 1016, 1133, 1262, 1280
HincII	GTYRAC	1 cut(s)	1327
HindII	GTYRAC	1 cut(s)	1327
HinfI	GANTC	4 cut(s)	46, 940, 1009, 1117
HpaII	CCGG	4 cut(s)	275, 288, 1093, 1212
HphI	GGTGA	2 cut(s)	898, 1079
Hpy166II	GTNNAC	4 cut(s)	151, 207, 1179, 1327
Hpy188I	TCNGA	5 cut(s)	51, 502, 526, 1054, 1204
Hpy188III	TCNNGA	7 cut(s)	161, 376, 944, 961, 1013, 1277, 1307
Hpy8I	GTNNAC	4 cut(s)	151, 207, 1179, 1327
HpyAV	CCTTC	3 cut(s)	889, 909, 958
HpyCH4III	ACNGT	2 cut(s)	971, 1200
HpyCH4IV	ACGT	1 cut(s)	734
HpyCH4V	TGCA	6 cut(s)	151, 217, 1114, 1217, 1246, 1255
HpyF10VI	GCNNNNNNNGC	5 cut(s)	247, 271, 297, 1190, 1252
HpyF3I	CTNAG	2 cut(s)	93, 1173
HpySE526I	ACGT	1 cut(s)	734
Hsp92II	CATG	5 cut(s)	226, 1016, 1133, 1262, 1280
KflI	GGGWCCC	1 cut(s)	84
Ksp22I	TGATCA	2 cut(s)	1204, 1312
Kzo9I	GATC	3 cut(s)	1204, 1273, 1312
LmnI	GCTCC	2 cut(s)	667, 919
Lsp1109I	GCAGC	4 cut(s)	277, 280, 284, 1147
LweI	GCATC	2 cut(s)	1233, 1273
MaeI	CTAG	3 cut(s)	105, 681, 1287
MaeII	ACGT	1 cut(s)	734
MaeIII	GTNAC	2 cut(s)	749, 1085
MalI	GATC	3 cut(s)	1206, 1275, 1314
MboI	GATC	3 cut(s)	1204, 1273, 1312
MhlI	GDGCHC	2 cut(s)	9, 153
MluCI	AATT	5 cut(s)	142, 283, 370, 604, 1249
MlyI	GAGTC	2 cut(s)	40, 1111
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	3 cut(s)	258, 609, 686
MslI	CAYNNNNRTG	4 cut(s)	212, 525, 1212, 1281
MspA1I	CMGCKG	3 cut(s)	180, 757, 1193
MspI	CCGG	4 cut(s)	275, 288, 1093, 1212
MspR9I	CCNGG	2 cut(s)	89, 1094
Mva1269I	GAATGC	2 cut(s)	956, 1122
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	247, 271, 297, 1190, 1252
NciI	CCSGG	1 cut(s)	1094
NdeII	GATC	3 cut(s)	1204, 1273, 1312
NlaIII	CATG	5 cut(s)	226, 1016, 1133, 1262, 1280
NlaIV	GGNNCC	4 cut(s)	6, 85, 86, 230
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	1085
OliI	CACNNNNGTG	1 cut(s)	212
PagI	TCATGA	2 cut(s)	1012, 1276
PctI	GAATGC	2 cut(s)	956, 1122
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	940, 1009
PflMI	CCANNNNNTGG	1 cut(s)	1159
PinAI	ACCGGT	1 cut(s)	1211
PkrI	GCNGC	7 cut(s)	267, 270, 273, 293, 296, 299, 1137
PleI	GAGTC	2 cut(s)	40, 1111
PpsI	GAGTC	2 cut(s)	40, 1111
PpuMI	RGGWCCY	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	2 cut(s)	749, 1085
PspFI	CCCAGC	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	4 cut(s)	6, 85, 86, 230
PspPI	GGNCC	2 cut(s)	84, 1105
PspPPI	RGGWCCY	1 cut(s)	84
PstNI	CAGNNNCTG	1 cut(s)	238
PvuII	CAGCTG	2 cut(s)	757, 1193
RseI	CAYNNNNRTG	4 cut(s)	212, 525, 1212, 1281
SaqAI	TTAA	3 cut(s)	258, 609, 686
SatI	GCNGC	7 cut(s)	266, 269, 272, 292, 295, 298, 1136
Sau3AI	GATC	3 cut(s)	1204, 1273, 1312
Sau96I	GGNCC	2 cut(s)	84, 1105
SchI	GAGTC	2 cut(s)	40, 1111
ScrFI	CCNGG	2 cut(s)	89, 1094
SduI	GDGCHC	2 cut(s)	9, 153
SetI	ASST	9 cut(s)	216, 383, 393, 650, 711, 737, 759, 1052, 1195
SfaNI	GCATC	2 cut(s)	1233, 1273
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	4 cut(s)	212, 525, 1212, 1281
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	5 cut(s)	142, 283, 370, 604, 1249
SsiI	CCGC	6 cut(s)	178, 272, 291, 294, 300, 803
SspMI	CTAG	3 cut(s)	105, 681, 1287
StyD4I	CCNGG	2 cut(s)	87, 1092
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	971, 1200
TaiI	ACGT	1 cut(s)	737
TaqI	TCGA	1 cut(s)	960
TasI	AATT	5 cut(s)	142, 283, 370, 604, 1249
TauI	GCSGC	3 cut(s)	274, 294, 297
TfiI	GAWTC	2 cut(s)	940, 1009
Tru1I	TTAA	3 cut(s)	258, 609, 686
Tru9I	TTAA	3 cut(s)	258, 609, 686
TscAI	CASTG	2 cut(s)	976, 1181
TseFI	GTSAC	1 cut(s)	1085
TseI	GCWGC	4 cut(s)	265, 268, 297, 1135
Tsp45I	GTSAC	1 cut(s)	1085
TspDTI	ATGAA	4 cut(s)	113, 1001, 1052, 1309
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	2 cut(s)	976, 1181
Van91I	CCANNNNNTGG	1 cut(s)	1159
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	3 cut(s)	142, 604, 1249
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	3 cut(s)	105, 681, 1287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.