Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Forward (+)

41406260 .. 41407688

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1282300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGATGTCCTCGAGAAGAAAGAAGTGGACAGAGTCCGAGGAGAGAACTCTGATCGACAGATACGGAGAGATGATCGCTCATGGGACCCTTGCTAAGATGAAAACTAGAGAGAAAAAGTTTAAACCCATTGCCTGCTATGTGAATTCTGTGCACCATCTTCGAGACTCGATCGCGTATCGTTGGCAGTGGTCTTGGAAGGATGTTTCCACCAAGGTCCAGAACATGAGGCACCAGTATATGCTTGTGAAACAGAAGATTAAGAAACAGCAACCCGAGTGTAATTCGGGGGGTGGTGGTGGTGGTGGTGGTGGTAGTCGTGGTGGGAGTGGGGAGTGTAGTGAGGAGGAGTTTGATTGGATGGAGGGCCTCGCTCATTGGTCAAATTTTTTGAGGTATAAAGACGTTTTTGGGGATGTGGAGATTGTGAGTAATAGGGGTAATGATTTGATGGTGTCTGTGAATGGGGATGGTGAGAATGGTGGGGGGTTTGTGGGGAGTGGAAGGGGAATGGGGCTTCTGGAGTTTGGGCAATTGGGGCATTCGGATGGGGATTTTGGGGCGGGGATTGATGGGGTTGAGAATGGAGTGATGGGTTTGGGATTTGAGTACGACAGGGAGGAGGGAGAGGAGAATTTTAATAGTAATGATCGGTTGAGGCAGAATGGAGATGACAAGTTTGTGTGCGAAGGAGTGGAGCAAAGTGGTCATAATTTAAAGAAGAGGAAGAAGAAGAAGAGGGAGGTGTCGACGGGGTTGGGAAAGAAGAAGGCATGGGCCTTTCTATGTAACCAACTGGGCAAGTTGAAGGAAATGGAGGCACAATTTGAGCATCGCGAGGCAGCGAGAGAACGGGACAGACAGAGGAGTGAGAATTTTAGAATGGAGTGTGAGCAAGAACGAGAATGGAAATGGGAGGAATGGGCAAATAAAAAGGAGATGAAGGGGAAGACAAGAGAGAAGTTAAAGAAGCAGAGGATTTTAGAATGGGACGAATTGGAGAAGGAGAGTGAACAAAGAGAAATAAGAAGGAAAGAGGAAGAGTTGATTCATGAGAGGGAATGGGAGGAGAGGATGAATAGGAGGAGAACAGAAAGGAAGACGAGGATTGACGAAATGTTGGGTCACCACCGGGCAGAGATGGGCCAGATGCAGACTCGTATTCTTCATGAGCAACAAAACCTTATGAGCCAGTTACTTGGGATTGTCTCCCAGTGGACTGCTCATCCAGCTGGATTGTCTGATCATACAAATGCTAGTAACCATTATTTACCACAAATGATGCAGAACTTGCACCATGTGAATAGTTTGGTTCATGACGATGCTAGGGTTGAAGGAGAAAATCAAGATGATCAATTCATTGTCGATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

457

Amino Acids

53.05

Weight (kDa)

6.55

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	746
AccII	CGCG	2 cut(s)	173, 834
AciI	CCGC	1 cut(s)	560
AcsI	RAATTY	4 cut(s)	142, 382, 631, 871
AdeI	CACNNNGTG	1 cut(s)	1297
AfaI	GTAC	1 cut(s)	608
AgsI	TTSAA	2 cut(s)	805, 1331
AluBI	AGCT	1 cut(s)	1229
AluI	AGCT	1 cut(s)	1229
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	156, 1210
Alw44I	GTGCAC	1 cut(s)	149
Ama87I	CYCGRG	2 cut(s)	10, 272
AoxI	GGCC	3 cut(s)	364, 774, 1141
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	839
ApoI	RAATTY	4 cut(s)	142, 382, 631, 871
AspS9I	GGNCC	5 cut(s)	84, 214, 364, 774, 1141
AsuC2I	CCSGG	1 cut(s)	1130
AsuHPI	GGTGA	2 cut(s)	482, 1115
AvaI	CYCGRG	2 cut(s)	10, 272
AvaII	GGWCC	2 cut(s)	84, 214
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	228
BbsI	GAAGAC	2 cut(s)	953, 1103
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	851
BccI	CCATC	9 cut(s)	162, 352, 442, 461, 539, 563, 583, 1132, 1358
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BclI	TGATCA	2 cut(s)	1240, 1348
BcnI	CCSGG	1 cut(s)	1130
BcoDI	GTCTC	2 cut(s)	156, 1210
BfaI	CTAG	3 cut(s)	105, 1254, 1323
BisI	GCNGC	1 cut(s)	840
BlsI	GCNGC	1 cut(s)	841
Bme1390I	CCNGG	1 cut(s)	1130
Bme18I	GGWCC	2 cut(s)	84, 214
BmeT110I	CYCGRG	2 cut(s)	10, 272
BmgT120I	GGNCC	5 cut(s)	84, 214, 364, 774, 1141
BmiI	GGNNCC	3 cut(s)	85, 86, 230
BmrFI	CCNGG	1 cut(s)	1130
BmrI	ACTGGG	2 cut(s)	803, 1204
BmsI	GCATC	4 cut(s)	838, 1137, 1269, 1309
BmuI	ACTGGG	2 cut(s)	803, 1204
BpiI	GAAGAC	2 cut(s)	953, 1103
BpmI	CTGGAG	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	1130
BsaJI	CCNNGG	2 cut(s)	36, 210
Bse1I	ACTGG	4 cut(s)	232, 798, 1189, 1210
Bse3DI	GCAATG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	36, 210
BseGI	GGATG	7 cut(s)	205, 363, 418, 472, 550, 1077, 1222
BseMI	GCAATG	1 cut(s)	126
BseNI	ACTGG	4 cut(s)	232, 798, 1189, 1210
BseRI	GAGGAG	8 cut(s)	53, 356, 359, 632, 641, 877, 1079, 1096
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	851
Bsh1236I	CGCG	2 cut(s)	173, 834
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	366, 776, 1143
BshNI	GGYRCC	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	2 cut(s)	10, 272
BsiSI	CCGG	1 cut(s)	1129
BslFI	GGGAC	3 cut(s)	97, 866, 1001
BsmAI	GTCTC	2 cut(s)	156, 1210
BsmFI	GGGAC	3 cut(s)	97, 866, 1001
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	366, 776, 1143
BsoBI	CYCGRG	2 cut(s)	10, 272
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	6 cut(s)	51, 72, 168, 646, 1240, 1348
Bsp68I	TCGCGA	1 cut(s)	834
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	3 cut(s)	366, 776, 1143
BspFNI	CGCG	2 cut(s)	173, 834
BspHI	TCATGA	3 cut(s)	1048, 1165, 1312
BspLI	GGNNCC	3 cut(s)	85, 86, 230
BspT107I	GGYRCC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	4 cut(s)	232, 798, 1189, 1210
BssECI	CCNNGG	2 cut(s)	36, 210
BssMI	GATC	6 cut(s)	51, 72, 168, 646, 1240, 1348
BssT1I	CCWWGG	1 cut(s)	210
Bst6I	CTCTTC	3 cut(s)	713, 728, 1032
BstAPI	GCANNNNNTGC	1 cut(s)	1288
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	93
BstEII	GGTNACC	1 cut(s)	1121
BstF5I	GGATG	7 cut(s)	205, 363, 418, 472, 550, 1077, 1222
BstFNI	CGCG	2 cut(s)	173, 834
BstKTI	GATC	6 cut(s)	54, 75, 171, 649, 1243, 1351
BstMAI	GTCTC	2 cut(s)	156, 1210
BstMBI	GATC	6 cut(s)	51, 72, 168, 646, 1240, 1348
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	3 cut(s)	535, 1226, 1288
BstPI	GGTNACC	1 cut(s)	1121
BstSCI	CCNGG	1 cut(s)	1128
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	2 cut(s)	173, 834
BstV1I	GCAGC	1 cut(s)	851
BstV2I	GAAGAC	2 cut(s)	953, 1103
BstXI	CCANNNNNNTGG	1 cut(s)	1196
BsuRI	GGCC	3 cut(s)	366, 776, 1143
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	7 cut(s)	205, 363, 418, 472, 550, 1077, 1222
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	2 cut(s)	191, 1217
BtuMI	TCGCGA	1 cut(s)	834
Cac8I	GCNNGC	1 cut(s)	133
CciI	TCATGA	3 cut(s)	1048, 1165, 1312
Cfr13I	GGNCC	5 cut(s)	84, 214, 364, 774, 1141
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	7 cut(s)	80, 223, 771, 1049, 1166, 1295, 1313
CviJI	RGCY	6 cut(s)	366, 514, 776, 1143, 1188, 1229
CviKI_1	RGCY	6 cut(s)	366, 514, 776, 1143, 1188, 1229
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	6 cut(s)	53, 74, 170, 648, 1242, 1350
DpnII	GATC	6 cut(s)	51, 72, 168, 646, 1240, 1348
DraI	TTTAAA	2 cut(s)	121, 714
DraIII	CACNNNGTG	1 cut(s)	1297
Eam1104I	CTCTTC	3 cut(s)	713, 728, 1032
EarI	CTCTTC	3 cut(s)	713, 728, 1032
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	84, 214
Eco88I	CYCGRG	2 cut(s)	10, 272
Eco91I	GGTNACC	1 cut(s)	1121
EcoO109I	RGGNCCY	2 cut(s)	84, 364
EcoO65I	GGTNACC	1 cut(s)	1121
EcoRI	GAATTC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	7 cut(s)	83, 226, 774, 1052, 1169, 1298, 1316
FaqI	GGGAC	3 cut(s)	97, 866, 1001
FatI	CATG	7 cut(s)	79, 222, 770, 1048, 1165, 1294, 1312
FauI	CCCGC	1 cut(s)	553
FbaI	TGATCA	2 cut(s)	1240, 1348
FblI	GTMKAC	1 cut(s)	746
Fnu4HI	GCNGC	1 cut(s)	840
FokI	GGATG	7 cut(s)	212, 370, 425, 479, 557, 1084, 1209
Fsp4HI	GCNGC	1 cut(s)	840
FspBI	CTAG	3 cut(s)	105, 1254, 1323
GluI	GCNGC	1 cut(s)	840
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	3 cut(s)	366, 776, 1143
HapII	CCGG	1 cut(s)	1129
Hin1II	CATG	7 cut(s)	83, 226, 774, 1052, 1169, 1298, 1316
HincII	GTYRAC	1 cut(s)	747
HindII	GTYRAC	1 cut(s)	747
HinfI	GANTC	4 cut(s)	32, 164, 1045, 1153
HpaII	CCGG	1 cut(s)	1129
HphI	GGTGA	2 cut(s)	482, 1115
Hpy166II	GTNNAC	5 cut(s)	27, 151, 747, 1010, 1215
Hpy188I	TCNGA	4 cut(s)	37, 51, 544, 1240
Hpy188III	TCNNGA	9 cut(s)	12, 161, 217, 518, 833, 1049, 1166, 1313, 1343
Hpy8I	GTNNAC	5 cut(s)	27, 151, 747, 1010, 1215
Hpy99I	CGWCG	1 cut(s)	751
HpyAV	CCTTC	9 cut(s)	190, 495, 680, 760, 799, 934, 994, 1020, 1325
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	4 cut(s)	151, 1150, 1282, 1291
HpyF10VI	GCNNNNNNNGC	3 cut(s)	535, 1226, 1288
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	7 cut(s)	83, 226, 774, 1052, 1169, 1298, 1316
KflI	GGGWCCC	1 cut(s)	84
Ksp22I	TGATCA	2 cut(s)	1240, 1348
Kzo9I	GATC	6 cut(s)	51, 72, 168, 646, 1240, 1348
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	1 cut(s)	851
LweI	GCATC	4 cut(s)	838, 1137, 1269, 1309
MaeI	CTAG	3 cut(s)	105, 1254, 1323
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	4 cut(s)	785, 1121, 1191, 1256
MalI	GATC	6 cut(s)	53, 74, 170, 648, 1242, 1350
MboI	GATC	6 cut(s)	51, 72, 168, 646, 1240, 1348
MfeI	CAATTG	1 cut(s)	530
MhlI	GDGCHC	1 cut(s)	153
MlyI	GAGTC	3 cut(s)	41, 158, 1147
MseI	TTAA	5 cut(s)	120, 258, 636, 713, 962
MslI	CAYNNNNRTG	3 cut(s)	543, 1248, 1317
MspA1I	CMGCKG	1 cut(s)	1229
MspI	CCGG	1 cut(s)	1129
MspR9I	CCNGG	1 cut(s)	1130
MssI	GTTTAAAC	1 cut(s)	121
MunI	CAATTG	1 cut(s)	530
Mva1269I	GAATGC	1 cut(s)	538
MvnI	CGCG	2 cut(s)	173, 834
MwoI	GCNNNNNNNGC	3 cut(s)	535, 1226, 1288
NciI	CCSGG	1 cut(s)	1130
NdeII	GATC	6 cut(s)	51, 72, 168, 646, 1240, 1348
NlaIII	CATG	7 cut(s)	83, 226, 774, 1052, 1169, 1298, 1316
NlaIV	GGNNCC	3 cut(s)	85, 86, 230
NmuCI	GTSAC	1 cut(s)	1121
NruI	TCGCGA	1 cut(s)	834
PaeR7I	CTCGAG	1 cut(s)	10
PagI	TCATGA	3 cut(s)	1048, 1165, 1312
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	1045
PflFI	GACNNNGTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	841
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	3 cut(s)	40, 158, 1147
PmeI	GTTTAAAC	1 cut(s)	121
PpsI	GAGTC	3 cut(s)	40, 158, 1147
PpuMI	RGGWCCY	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	84
PspEI	GGTNACC	1 cut(s)	1121
PspN4I	GGNNCC	3 cut(s)	85, 86, 230
PspPI	GGNCC	5 cut(s)	84, 214, 364, 774, 1141
PspPPI	RGGWCCY	1 cut(s)	84
PsyI	GACNNNGTC	1 cut(s)	31
PvuI	CGATCG	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	1229
RruI	TCGCGA	1 cut(s)	834
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	3 cut(s)	543, 1248, 1317
SalI	GTCGAC	1 cut(s)	745
SaqAI	TTAA	5 cut(s)	120, 258, 636, 713, 962
SatI	GCNGC	1 cut(s)	840
Sau3AI	GATC	6 cut(s)	51, 72, 168, 646, 1240, 1348
Sau96I	GGNCC	5 cut(s)	84, 214, 364, 774, 1141
SchI	GAGTC	3 cut(s)	41, 158, 1147
ScrFI	CCNGG	1 cut(s)	1130
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	6 cut(s)	216, 395, 405, 744, 1182, 1231
SfaNI	GCATC	4 cut(s)	838, 1137, 1269, 1309
Sfr274I	CTCGAG	1 cut(s)	10
SinI	GGWCC	2 cut(s)	84, 214
SlaI	CTCGAG	1 cut(s)	10
SmiMI	CAYNNNNRTG	3 cut(s)	543, 1248, 1317
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SsiI	CCGC	1 cut(s)	560
SspMI	CTAG	3 cut(s)	105, 1254, 1323
StyD4I	CCNGG	1 cut(s)	1128
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	6 cut(s)	11, 54, 160, 167, 746, 1362
TfiI	GAWTC	1 cut(s)	1045
Tru1I	TTAA	5 cut(s)	120, 258, 636, 713, 962
Tru9I	TTAA	5 cut(s)	120, 258, 636, 713, 962
TscAI	CASTG	2 cut(s)	191, 1217
TseFI	GTSAC	1 cut(s)	1121
TseI	GCWGC	1 cut(s)	839
Tsp45I	GTSAC	1 cut(s)	1121
TspDTI	ATGAA	7 cut(s)	113, 953, 1037, 1088, 1154, 1301, 1345
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	191, 1217
Tth111I	GACNNNGTC	1 cut(s)	31
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	84, 214
XapI	RAATTY	4 cut(s)	142, 382, 631, 871
XhoI	CTCGAG	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	746
XspI	CTAG	3 cut(s)	105, 1254, 1323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.