Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Forward (+)

35100006 .. 35100995

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAGGGGCTTACACATTGGGCTAATTTCTTGAGGTATAAGGAGGTTTTTGGGGATATTGTGGGTAGTAATGGGAATGATTTGATGGGGGGTGGAAATGGGGATTGTGAGAATGTTGGGGGGTTTGTGGGGGGTGGGAGGGGAATGGAGATTTCGGAGTTTGGGCAAATGGGGCATTCGGATGGGGATTTCGGGGGAGGGATTGATAATGGGATGATGGGGTTGGGGTTTGAGTATGATGGGGAGGAGGGAGGGGAGAATTTTAATGGGGATGTTAGGATGAGGGAGGATGGAGATGGGAGGTTTGTGTGTGAGGAAGTGGAGCAGAATGGTTCTAGTTTAAAGAAGAAGAGGAAGAGGGAGGTTTCGACCGCGTTGGGAAAGAAGGCGTGGGCTTTTATCGGTAACCAGCTGGGAAAGTTGAGGGAAATGGAGGCTCGGTTTGAACAGCGTGAGGCGGAGAGGGAAAGGGTGAGACAGAGGAGTGAGAGTTTTAGAATGGAGTGTGAGCAAGAACGGGAATGGAAATGGGAGGAATGGGTGAAGAAGCAGGAGGAGAAAGAAAAGGCAAGGGAGCAGTTGAAGAAGCAGAGGATTCAAGAATGGGAAGCATTTGAGAAGGACAGTGAGGAGAGGGAGAGAAGAAGAAGAGAAGAAGCCTTGATTCATGAGAGGGAATGGGAGGAGAGGATGAATAGGAGGAGGTCAGAATGGAAGAAGAGGATGGATGATATGTTGGGTCATCACCGGGCAGAGATGGGCCAAATGCAGACTCGCATTCTCCATGAGCAGCAAAATCTTACGAGCCAGTTACTGGGGATTGTCTCTCAGTGGACTGCTCATCCAGCTGGACTGTCTGATCATACCGGTGCAAGCAACCATTATTTATCACAGATGATGCAGAATTTGCACCATGTGAATAGTTTGGATCATGACGATGCTAGGGTTGATGGAGATAATCAAGATGATCAGTTCATTGTTGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

38.25

Weight (kDa)

5.24

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	814
AccII	CGCG	1 cut(s)	374
AciI	CCGC	2 cut(s)	372, 458
AclWI	GGATC	1 cut(s)	936
AcsI	RAATTY	2 cut(s)	259, 904
AdeI	CACNNNGTG	1 cut(s)	916
AfiI	CCNNNNNNNGG	1 cut(s)	814
AgeI	ACCGGT	1 cut(s)	866
AgsI	TTSAA	3 cut(s)	446, 583, 599
AluBI	AGCT	2 cut(s)	412, 848
AluI	AGCT	2 cut(s)	412, 848
Alw26I	GTCTC	2 cut(s)	469, 829
AlwI	GGATC	1 cut(s)	936
AlwNI	CAGNNNCTG	1 cut(s)	814
AoxI	GGCC	1 cut(s)	760
ApeKI	GCWGC	1 cut(s)	790
ApoI	RAATTY	2 cut(s)	259, 904
AsiGI	ACCGGT	1 cut(s)	866
AspS9I	GGNCC	1 cut(s)	760
AsuC2I	CCSGG	1 cut(s)	749
AsuHPI	GGTGA	3 cut(s)	484, 553, 737
BbvI	GCAGC	1 cut(s)	802
BclI	TGATCA	2 cut(s)	859, 967
BcnI	CCSGG	1 cut(s)	749
BcoDI	GTCTC	2 cut(s)	469, 829
BfaI	CTAG	2 cut(s)	336, 942
BisI	GCNGC	1 cut(s)	791
BlsI	GCNGC	1 cut(s)	792
Bme1390I	CCNGG	1 cut(s)	749
BmgT120I	GGNCC	1 cut(s)	760
BmrFI	CCNGG	1 cut(s)	749
BmrI	ACTGGG	1 cut(s)	824
BmsI	GCATC	2 cut(s)	888, 928
BmuI	ACTGGG	1 cut(s)	824
BpuEI	CTTGAG	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	749
BsaWI	WCCGGW	1 cut(s)	866
BsaXI	ACNNNNNCTCC	4 cut(s)	425, 455, 475, 505
Bsc4I	CCNNNNNNNGG	1 cut(s)	814
Bse118I	RCCGGY	1 cut(s)	866
Bse1I	ACTGG	2 cut(s)	808, 819
BseGI	GGATG	9 cut(s)	187, 219, 277, 285, 295, 696, 729, 733, 841
BseLI	CCNNNNNNNGG	1 cut(s)	814
BseMII	CTCAG	1 cut(s)	842
BseNI	ACTGG	2 cut(s)	808, 819
BseRI	GAGGAG	6 cut(s)	260, 496, 569, 644, 698, 715
BseXI	GCAGC	1 cut(s)	802
BseYI	CCCAGC	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	762
BshTI	ACCGGT	1 cut(s)	866
BsiEI	CGRYCG	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	748, 867
BslI	CCNNNNNNNGG	1 cut(s)	814
BsmAI	GTCTC	2 cut(s)	469, 829
BsmI	GAATGC	2 cut(s)	175, 777
BsnI	GGCC	1 cut(s)	762
Bsp143I	GATC	3 cut(s)	859, 928, 967
BspACI	CCGC	2 cut(s)	372, 458
BspANI	GGCC	1 cut(s)	762
BspCNI	CTCAG	1 cut(s)	841
BspFNI	CGCG	1 cut(s)	374
BspHI	TCATGA	2 cut(s)	667, 931
BspPI	GGATC	1 cut(s)	936
BsrFI	RCCGGY	1 cut(s)	866
BsrI	ACTGG	2 cut(s)	808, 819
BssAI	RCCGGY	1 cut(s)	866
BssMI	GATC	3 cut(s)	859, 928, 967
Bst4CI	ACNGT	2 cut(s)	626, 855
Bst6I	CTCTTC	4 cut(s)	344, 350, 643, 713
BstAPI	GCANNNNNTGC	1 cut(s)	907
BstC8I	GCNNGC	1 cut(s)	874
BstDEI	CTNAG	1 cut(s)	828
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	9 cut(s)	187, 219, 277, 285, 295, 696, 729, 733, 841
BstFNI	CGCG	1 cut(s)	374
BstKTI	GATC	3 cut(s)	862, 931, 970
BstMAI	GTCTC	2 cut(s)	469, 829
BstMBI	GATC	3 cut(s)	859, 928, 967
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 845, 907
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	747
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	802
BsuRI	GGCC	1 cut(s)	762
BtsCI	GGATG	9 cut(s)	187, 219, 277, 285, 295, 696, 729, 733, 841
BtsIMutI	CAGTG	2 cut(s)	631, 836
Cac8I	GCNNGC	1 cut(s)	874
CaiI	CAGNNNCTG	1 cut(s)	814
CciI	TCATGA	2 cut(s)	667, 931
Cfr10I	RCCGGY	1 cut(s)	866
Cfr13I	GGNCC	1 cut(s)	760
CspAI	ACCGGT	1 cut(s)	866
CviAII	CATG	4 cut(s)	668, 785, 914, 932
CviJI	RGCY	9 cut(s)	10, 23, 395, 412, 437, 659, 762, 807, 848
CviKI_1	RGCY	9 cut(s)	10, 23, 395, 412, 437, 659, 762, 807, 848
DdeI	CTNAG	1 cut(s)	828
DpnI	GATC	3 cut(s)	861, 930, 969
DpnII	GATC	3 cut(s)	859, 928, 967
DraI	TTTAAA	1 cut(s)	342
DraIII	CACNNNGTG	1 cut(s)	916
Eam1104I	CTCTTC	4 cut(s)	344, 350, 643, 713
EarI	CTCTTC	4 cut(s)	344, 350, 643, 713
EciI	GGCGGA	1 cut(s)	473
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
FaeI	CATG	4 cut(s)	671, 788, 917, 935
FaiI	YATR	8 cut(s)	39, 237, 669, 734, 786, 864, 915, 933
FatI	CATG	4 cut(s)	667, 784, 913, 931
FbaI	TGATCA	2 cut(s)	859, 967
Fnu4HI	GCNGC	1 cut(s)	791
FokI	GGATG	9 cut(s)	194, 226, 284, 292, 302, 703, 736, 740, 828
Fsp4HI	GCNGC	1 cut(s)	791
FspBI	CTAG	2 cut(s)	336, 942
GluI	GCNGC	1 cut(s)	791
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	762
HapII	CCGG	2 cut(s)	748, 867
Hin1II	CATG	4 cut(s)	671, 788, 917, 935
HinfI	GANTC	3 cut(s)	595, 664, 772
HpaII	CCGG	2 cut(s)	748, 867
HphI	GGTGA	3 cut(s)	484, 553, 737
Hpy166II	GTNNAC	1 cut(s)	834
Hpy188I	TCNGA	4 cut(s)	157, 181, 709, 859
Hpy188III	TCNNGA	5 cut(s)	31, 599, 668, 932, 962
Hpy8I	GTNNAC	1 cut(s)	834
HpyAV	CCTTC	2 cut(s)	379, 613
HpyCH4III	ACNGT	2 cut(s)	626, 855
HpyCH4V	TGCA	4 cut(s)	769, 872, 901, 910
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 845, 907
HpyF3I	CTNAG	1 cut(s)	828
Hsp92II	CATG	4 cut(s)	671, 788, 917, 935
Ksp22I	TGATCA	2 cut(s)	859, 967
Kzo9I	GATC	3 cut(s)	859, 928, 967
LmnI	GCTCC	2 cut(s)	322, 574
LpnPI	CCDG	9 cut(s)	398, 422, 536, 761, 800, 821, 834, 858, 880
Lsp1109I	GCAGC	1 cut(s)	802
LweI	GCATC	2 cut(s)	888, 928
MaeI	CTAG	2 cut(s)	336, 942
MaeIII	GTNAC	2 cut(s)	404, 810
MalI	GATC	3 cut(s)	861, 930, 969
MboI	GATC	3 cut(s)	859, 928, 967
MluCI	AATT	3 cut(s)	25, 259, 904
MlyI	GAGTC	1 cut(s)	766
MseI	TTAA	2 cut(s)	264, 341
MslI	CAYNNNNRTG	3 cut(s)	180, 867, 936
MspA1I	CMGCKG	2 cut(s)	412, 848
MspI	CCGG	2 cut(s)	748, 867
MspR9I	CCNGG	1 cut(s)	749
Mva1269I	GAATGC	2 cut(s)	175, 777
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	3 cut(s)	172, 845, 907
NciI	CCSGG	1 cut(s)	749
NdeII	GATC	3 cut(s)	859, 928, 967
NlaIII	CATG	4 cut(s)	671, 788, 917, 935
PagI	TCATGA	2 cut(s)	667, 931
PctI	GAATGC	2 cut(s)	175, 777
PfeI	GAWTC	2 cut(s)	595, 664
PflMI	CCANNNNNTGG	1 cut(s)	814
PinAI	ACCGGT	1 cut(s)	866
PkrI	GCNGC	1 cut(s)	792
PleI	GAGTC	1 cut(s)	766
PpsI	GAGTC	1 cut(s)	766
PspEI	GGTNACC	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	760
PstNI	CAGNNNCTG	1 cut(s)	814
PvuII	CAGCTG	2 cut(s)	412, 848
RseI	CAYNNNNRTG	3 cut(s)	180, 867, 936
SaqAI	TTAA	2 cut(s)	264, 341
SatI	GCNGC	1 cut(s)	791
Sau3AI	GATC	3 cut(s)	859, 928, 967
Sau96I	GGNCC	1 cut(s)	760
SchI	GAGTC	1 cut(s)	766
ScrFI	CCNGG	1 cut(s)	749
SetI	ASST	7 cut(s)	38, 48, 305, 366, 414, 707, 850
SfaNI	GCATC	2 cut(s)	888, 928
SmiMI	CAYNNNNRTG	3 cut(s)	180, 867, 936
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	3 cut(s)	25, 259, 904
SsiI	CCGC	2 cut(s)	372, 458
SspMI	CTAG	2 cut(s)	336, 942
StyD4I	CCNGG	1 cut(s)	747
TaaI	ACNGT	2 cut(s)	626, 855
TaqI	TCGA	1 cut(s)	368
TasI	AATT	3 cut(s)	25, 259, 904
TfiI	GAWTC	2 cut(s)	595, 664
Tru1I	TTAA	2 cut(s)	264, 341
Tru9I	TTAA	2 cut(s)	264, 341
TscAI	CASTG	2 cut(s)	631, 836
TseI	GCWGC	1 cut(s)	790
TspDTI	ATGAA	3 cut(s)	656, 707, 964
TspRI	CASTG	2 cut(s)	631, 836
Van91I	CCANNNNNTGG	1 cut(s)	814
XapI	RAATTY	2 cut(s)	259, 904
XspI	CTAG	2 cut(s)	336, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.