Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006536.1

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Reverse (-)

112652 .. 113282

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006536.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atggtgcccccaagaagaaagaaatggacggaggccgaggagaggactctgatcgataaatacggggagatggtggctgatgggaccctggctaagatgaagaccagagagaagatgttcaaactacagggtgaattctgtgaattctgtgcactgtgttcaggaccctgttgcctatcgctggcaatggtcgtggaaagaacaggaatggaaatgggaggaatggagatgggccaaatgcagactcgcattctccatgagcagcaaaatcttacgagccagttactggggattgtctctcagtggactgctcatccagctggactgtctgatcataccggtgcaagcaatcattatttatcacagatgatgcagaatttgcaccatgtgaatagtttggatcatgacgatgctagggttgatggagataatcaagatgaccagttcattgttgacggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.22

Weight (kDa)

5.26

Isoelectric Point (pI)

24.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	286
AclWI	GGATC	1 cut(s)	408
AcsI	RAATTY	3 cut(s)	134, 143, 376
AdeI	CACNNNGTG	1 cut(s)	388
AfiI	CCNNNNNNNGG	3 cut(s)	42, 181, 286
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	301
Alw44I	GTGCAC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	408
AlwNI	CAGNNNCTG	1 cut(s)	286
AoxI	GGCC	2 cut(s)	33, 232
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	3 cut(s)	134, 143, 376
AsiGI	ACCGGT	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	84, 164, 232
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	84, 164
BaeGI	GKGCMC	2 cut(s)	9, 154
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	4 cut(s)	64, 74, 223, 416
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	125
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	2 cut(s)	84, 164
BmgT120I	GGNCC	3 cut(s)	84, 164, 232
BmiI	GGNNCC	4 cut(s)	6, 85, 86, 166
BmrFI	CCNGG	1 cut(s)	89
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	2 cut(s)	360, 400
BmuI	ACTGGG	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	36, 87
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 181, 286
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	3 cut(s)	280, 291, 442
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	36, 87
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	3 cut(s)	42, 181, 286
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	3 cut(s)	280, 291, 442
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	2 cut(s)	9, 154
BseXI	GCAGC	1 cut(s)	274
BshFI	GGCC	2 cut(s)	35, 234
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	338
BshVI	ATCGAT	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	3 cut(s)	42, 181, 286
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	35, 234
Bsp1286I	GDGCHC	2 cut(s)	9, 154
Bsp143I	GATC	3 cut(s)	51, 331, 400
BspANI	GGCC	2 cut(s)	35, 234
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	4 cut(s)	6, 85, 86, 166
BspPI	GGATC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	3 cut(s)	280, 291, 442
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	2 cut(s)	36, 87
BssMI	GATC	3 cut(s)	51, 331, 400
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	156, 327
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	183, 346
BstDEI	CTNAG	2 cut(s)	93, 300
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	3 cut(s)	54, 334, 403
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	3 cut(s)	51, 331, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 379
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	125
BstSLI	GKGCMC	2 cut(s)	9, 154
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	35, 234
BsuTUI	ATCGAT	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	152, 308
Cac8I	GCNNGC	2 cut(s)	183, 346
CaiI	CAGNNNCTG	1 cut(s)	286
CciI	TCATGA	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	3 cut(s)	84, 164, 232
ClaI	ATCGAT	1 cut(s)	54
CspAI	ACCGGT	1 cut(s)	338
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	3 cut(s)	257, 386, 404
CviJI	RGCY	6 cut(s)	35, 77, 92, 234, 279, 320
CviKI_1	RGCY	6 cut(s)	35, 77, 92, 234, 279, 320
DdeI	CTNAG	2 cut(s)	93, 300
DpnI	GATC	3 cut(s)	53, 333, 402
DpnII	GATC	3 cut(s)	51, 331, 400
DraIII	CACNNNGTG	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	84, 164
EcoO109I	RGGNCCY	2 cut(s)	84, 164
EcoRI	GAATTC	2 cut(s)	134, 143
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	260, 389, 407
FaiI	YATR	4 cut(s)	258, 336, 387, 405
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	3 cut(s)	256, 385, 403
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	1 cut(s)	414
GluI	GCNGC	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	35, 234
HapII	CCGG	1 cut(s)	339
Hin1II	CATG	3 cut(s)	260, 389, 407
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	46, 244
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	3 cut(s)	152, 306, 454
Hpy188I	TCNGA	2 cut(s)	51, 331
Hpy188III	TCNNGA	3 cut(s)	162, 404, 434
Hpy8I	GTNNAC	3 cut(s)	152, 306, 454
HpyCH4III	ACNGT	2 cut(s)	156, 327
HpyCH4V	TGCA	5 cut(s)	152, 241, 344, 373, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 379
HpyF3I	CTNAG	2 cut(s)	93, 300
Hsp92II	CATG	3 cut(s)	260, 389, 407
KflI	GGGWCCC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	51, 331, 400
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	2 cut(s)	360, 400
MaeI	CTAG	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	3 cut(s)	53, 333, 402
MboI	GATC	3 cut(s)	51, 331, 400
MboII	GAAGA	3 cut(s)	27, 112, 124
MhlI	GDGCHC	2 cut(s)	9, 154
MluCI	AATT	3 cut(s)	134, 143, 376
MlyI	GAGTC	2 cut(s)	40, 238
MnlI	CCTC	4 cut(s)	25, 31, 36, 212
MroXI	GAANNNNTTC	1 cut(s)	116
MslI	CAYNNNNRTG	2 cut(s)	339, 408
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	317, 379
NdeII	GATC	3 cut(s)	51, 331, 400
NlaIII	CATG	3 cut(s)	260, 389, 407
NlaIV	GGNNCC	4 cut(s)	6, 85, 86, 166
NmeAIII	GCCGAG	1 cut(s)	61
PagI	TCATGA	1 cut(s)	403
PctI	GAATGC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	2 cut(s)	40, 238
PpsI	GAGTC	2 cut(s)	40, 238
PpuMI	RGGWCCY	2 cut(s)	84, 164
Psp5II	RGGWCCY	2 cut(s)	84, 164
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	4 cut(s)	6, 85, 86, 166
PspPI	GGNCC	3 cut(s)	84, 164, 232
PspPPI	RGGWCCY	2 cut(s)	84, 164
PstNI	CAGNNNCTG	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	320
RseI	CAYNNNNRTG	2 cut(s)	339, 408
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	3 cut(s)	51, 331, 400
Sau96I	GGNCC	3 cut(s)	84, 164, 232
SchI	GAGTC	2 cut(s)	40, 238
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	9, 154
SetI	ASST	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	360, 400
SfcI	CTRYAG	1 cut(s)	125
SinI	GGWCC	2 cut(s)	84, 164
SmiMI	CAYNNNNRTG	2 cut(s)	339, 408
Sse9I	AATT	3 cut(s)	134, 143, 376
SspMI	CTAG	1 cut(s)	414
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	156, 327
TaqI	TCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	134, 143, 376
TscAI	CASTG	2 cut(s)	159, 308
TseI	GCWGC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	113, 436
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	2 cut(s)	159, 308
Van91I	CCANNNNNTGG	1 cut(s)	286
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	84, 164
XapI	RAATTY	3 cut(s)	134, 143, 376
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.