Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Reverse (-)

26763606 .. 26765054

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008193

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCGTTCAAATGGTTTGTGAAGAAGTTGAGCAGAATGATTGAAATGGTGACCCCAAGAAGAAACAAATGGACGGAGGCCGAGGAGAGGACTCTGATCGATAAATACGGCGAGATGGTGGCTGATGGGACCCTGGCTAAGATGAAGACCAGAGAGAAGAAGTTCAAACCCATTGCTTATTATGTGAATTCTGTGCACTATGTTCAAGACCCTGTTGCCTACCGCTGGCAATGGTCGTGGAAAGATGTGTCCACTAAGGTCCAGAACATGAGGCACCAGTATCTGCTTGTCAAGCAGAAGATTAAGAAGCAGCAGCAGCCGGAGAGTAATTCCGGCGGCGGCGGTGGGGATAGTAGTGGGGAGTGTAGTGTGGAGGAGTTTGATTGGATGGAGGGGCTTACACATTGGGCGAATTTCTTGAGGTATAAGGAGGTTTTTGGGGATATTGTGGGTAGTAATGGGAATGATTTGATGGGGGGTGGAAATGGGGATTGTGAGAATGTTGGGGGGTTTGTGGGGGGTGGGAGGGGAATGGAGATTTCCGAGTTTGGGCAAATGGGACACTCGGATGGGGATTTCGGGGGAGGGATTGATAATGGGATGATGGGGTTGGGGTTTGAGTATGATGGGGAGGAGGGAGGGGAGAATTTTAATGGGGATGTTAGGATGAGGGAGGATGGAGATGGGAGGTTTGTGTGTGAAGAAGTGGAGCAGAATGGTTCTAGTTCAAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGGAGCTTTCGACTGCATTGGGAAAGAAGGCGTGGGCTTTTATTGGTAACCAGCTGGGCAAGTTGAGGGAAATGGAGGCTCGGTTTGAACAGTGTGAGGCGGAGAGGGAAAGGGAGAGACAGAGGAGTGAGAGTTTTAGAATGGAGTGTGAGCAAGAACGGGAATGGAAATGGGAGGAATGGGTGAAGAAGAAGGAAGAGAAAGAAAAGGCAAGGGAGCAGCTGAAGAAGCAGAGGTTTCAAGAATGGGAAGCATTTGAGAAGGACAGTGAGGAGAGGGAGAGAAGAAGAAGAGAAGAAACTTTGATTCATGAGAGGGAATGGGAGGAGAGGATGAATAGGAGGAGGTCAGAATGGAAGAAGAGGATGGATGATATGTTGGCCTGTTGGGTCACCACCGGGCAGAGATGGGCCAAATGCAGACTCGCATTCTCCATGAGCAGCAAAATCTTACGAGCCAGTTACTGGGGATTGTCTCTCAGTGGACTGCTCATCCAGCTGGACTGTCTGATCATGCCAGTGCAAGCAACCATTATTTATCACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

435

Amino Acids

51.02

Weight (kDa)

8.58

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccB7I	CCANNNNNTGG	1 cut(s)	1221
AciI	CCGC	5 cut(s)	223, 336, 339, 342, 857
AcsI	RAATTY	3 cut(s)	187, 412, 646
AcuI	CTGAAG	1 cut(s)	1001
AfiI	CCNNNNNNNGG	4 cut(s)	87, 225, 549, 1221
AgsI	TTSAA	7 cut(s)	10, 44, 166, 206, 729, 845, 998
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	4 cut(s)	763, 811, 979, 1255
AluI	AGCT	4 cut(s)	763, 811, 979, 1255
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	868, 1236
Alw44I	GTGCAC	1 cut(s)	194
AlwNI	CAGNNNCTG	2 cut(s)	283, 1221
AoxI	GGCC	3 cut(s)	78, 1137, 1167
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	5 cut(s)	310, 313, 316, 976, 1197
ApoI	RAATTY	3 cut(s)	187, 412, 646
Asp700I	GAANNNNTTC	1 cut(s)	161
AspS9I	GGNCC	3 cut(s)	129, 259, 1167
AsuC2I	CCSGG	1 cut(s)	1156
AsuHPI	GGTGA	3 cut(s)	61, 952, 1141
AvaII	GGWCC	2 cut(s)	129, 259
BaeGI	GKGCMC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	5 cut(s)	322, 325, 328, 988, 1209
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	1266
BcnI	CCSGG	1 cut(s)	1156
BcoDI	GTCTC	2 cut(s)	868, 1236
BfaI	CTAG	1 cut(s)	723
BisI	GCNGC	7 cut(s)	311, 314, 317, 337, 340, 977, 1198
BlsI	GCNGC	7 cut(s)	312, 315, 318, 338, 341, 978, 1199
Bme1390I	CCNGG	2 cut(s)	134, 1156
Bme18I	GGWCC	2 cut(s)	129, 259
BmgT120I	GGNCC	3 cut(s)	129, 259, 1167
BmiI	GGNNCC	3 cut(s)	130, 131, 275
BmrFI	CCNGG	2 cut(s)	134, 1156
BmrI	ACTGGG	1 cut(s)	1231
BmuI	ACTGGG	1 cut(s)	1231
BpiI	GAAGAC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	1156
Bsa29I	ATCGAT	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	81, 132
BsaXI	ACNNNNNCTCC	4 cut(s)	824, 854, 874, 904
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 225, 549, 1221
Bse1I	ACTGG	4 cut(s)	277, 1215, 1226, 1274
Bse3DI	GCAATG	2 cut(s)	171, 236
BseBI	CCWGG	1 cut(s)	134
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	81, 132
BseLI	CCNNNNNNNGG	4 cut(s)	87, 225, 549, 1221
BseMI	GCAATG	2 cut(s)	171, 236
BseMII	CTCAG	1 cut(s)	1249
BseNI	ACTGG	4 cut(s)	277, 1215, 1226, 1274
BseRI	GAGGAG	7 cut(s)	98, 389, 647, 895, 1043, 1097, 1114
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	5 cut(s)	322, 325, 328, 988, 1209
BseYI	CCCAGC	1 cut(s)	811
BshFI	GGCC	3 cut(s)	80, 1139, 1169
BshNI	GGYRCC	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	320, 333, 1155
BslFI	GGGAC	2 cut(s)	142, 573
BslI	CCNNNNNNNGG	4 cut(s)	87, 225, 549, 1221
BsmAI	GTCTC	2 cut(s)	868, 1236
BsmFI	GGGAC	2 cut(s)	142, 573
BsmI	GAATGC	1 cut(s)	1184
BsnI	GGCC	3 cut(s)	80, 1139, 1169
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	96, 1266
BspACI	CCGC	5 cut(s)	223, 336, 339, 342, 857
BspANI	GGCC	3 cut(s)	80, 1139, 1169
BspCNI	CTCAG	1 cut(s)	1248
BspDI	ATCGAT	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	1066
BspLI	GGNNCC	3 cut(s)	130, 131, 275
BspT107I	GGYRCC	1 cut(s)	273
BsrDI	GCAATG	2 cut(s)	171, 236
BsrI	ACTGG	4 cut(s)	277, 1215, 1226, 1274
BssECI	CCNNGG	2 cut(s)	81, 132
BssMI	GATC	2 cut(s)	96, 1266
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	3 cut(s)	849, 1025, 1262
Bst6I	CTCTTC	7 cut(s)	731, 737, 743, 749, 948, 1042, 1112
BstC8I	GCNNGC	2 cut(s)	227, 1281
BstDEI	CTNAG	3 cut(s)	138, 255, 1235
BstEII	GGTNACC	3 cut(s)	49, 803, 1147
BstKTI	GATC	2 cut(s)	99, 1269
BstMAI	GTCTC	2 cut(s)	868, 1236
BstMBI	GATC	2 cut(s)	96, 1266
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 316, 985, 1252
BstNI	CCWGG	1 cut(s)	134
BstPI	GGTNACC	3 cut(s)	49, 803, 1147
BstSCI	CCNGG	2 cut(s)	132, 1154
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	5 cut(s)	322, 325, 328, 988, 1209
BstV2I	GAAGAC	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	99
BsuRI	GGCC	3 cut(s)	80, 1139, 1169
BsuTUI	ATCGAT	1 cut(s)	99
BtsIMutI	CAGTG	4 cut(s)	854, 1030, 1243, 1281
Cac8I	GCNNGC	2 cut(s)	227, 1281
CaiI	CAGNNNCTG	2 cut(s)	283, 1221
CciI	TCATGA	1 cut(s)	1066
Cfr13I	GGNCC	3 cut(s)	129, 259, 1167
ClaI	ATCGAT	1 cut(s)	99
CspCI	CAANNNNNGTGG	2 cut(s)	218, 253
CviAII	CATG	4 cut(s)	268, 1067, 1192, 1270
DdeI	CTNAG	3 cut(s)	138, 255, 1235
DpnI	GATC	2 cut(s)	98, 1268
DpnII	GATC	2 cut(s)	96, 1266
Eam1104I	CTCTTC	7 cut(s)	731, 737, 743, 749, 948, 1042, 1112
EarI	CTCTTC	7 cut(s)	731, 737, 743, 749, 948, 1042, 1112
EciI	GGCGGA	1 cut(s)	872
Eco47I	GGWCC	2 cut(s)	129, 259
Eco57I	CTGAAG	1 cut(s)	1001
Eco91I	GGTNACC	3 cut(s)	49, 803, 1147
EcoO109I	RGGNCCY	1 cut(s)	129
EcoO65I	GGTNACC	3 cut(s)	49, 803, 1147
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	4 cut(s)	271, 1070, 1195, 1273
FaiI	YATR	9 cut(s)	183, 201, 269, 426, 624, 1068, 1133, 1193, 1271
FaqI	GGGAC	2 cut(s)	142, 573
FatI	CATG	4 cut(s)	267, 1066, 1191, 1269
FbaI	TGATCA	1 cut(s)	1266
Fnu4HI	GCNGC	7 cut(s)	311, 314, 317, 337, 340, 977, 1198
Fsp4HI	GCNGC	7 cut(s)	311, 314, 317, 337, 340, 977, 1198
FspBI	CTAG	1 cut(s)	723
GluI	GCNGC	7 cut(s)	311, 314, 317, 337, 340, 977, 1198
GsaI	CCCAGC	1 cut(s)	815
HaeIII	GGCC	3 cut(s)	80, 1139, 1169
HapII	CCGG	3 cut(s)	320, 333, 1155
Hin1II	CATG	4 cut(s)	271, 1070, 1195, 1273
HinfI	GANTC	3 cut(s)	91, 1063, 1179
HpaII	CCGG	3 cut(s)	320, 333, 1155
HphI	GGTGA	3 cut(s)	61, 952, 1141
Hpy166II	GTNNAC	3 cut(s)	196, 252, 1241
Hpy188I	TCNGA	5 cut(s)	96, 544, 568, 1108, 1266
Hpy188III	TCNNGA	5 cut(s)	206, 262, 418, 998, 1067
Hpy8I	GTNNAC	3 cut(s)	196, 252, 1241
HpyAV	CCTTC	3 cut(s)	778, 943, 1012
HpyCH4III	ACNGT	3 cut(s)	849, 1025, 1262
HpyCH4V	TGCA	4 cut(s)	196, 773, 1176, 1279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 316, 985, 1252
HpyF3I	CTNAG	3 cut(s)	138, 255, 1235
Hsp92II	CATG	4 cut(s)	271, 1070, 1195, 1273
KflI	GGGWCCC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	1266
Kzo9I	GATC	2 cut(s)	96, 1266
LmnI	GCTCC	3 cut(s)	709, 760, 973
Lsp1109I	GCAGC	5 cut(s)	322, 325, 328, 988, 1209
MaeI	CTAG	1 cut(s)	723
MaeIII	GTNAC	4 cut(s)	49, 803, 1147, 1217
MalI	GATC	2 cut(s)	98, 1268
MboI	GATC	2 cut(s)	96, 1266
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	4 cut(s)	187, 328, 412, 646
MlyI	GAGTC	2 cut(s)	85, 1173
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	2 cut(s)	303, 651
MslI	CAYNNNNRTG	2 cut(s)	567, 1274
MspA1I	CMGCKG	4 cut(s)	225, 811, 979, 1255
MspI	CCGG	3 cut(s)	320, 333, 1155
MspR9I	CCNGG	2 cut(s)	134, 1156
Mva1269I	GAATGC	1 cut(s)	1184
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	4 cut(s)	292, 316, 985, 1252
NciI	CCSGG	1 cut(s)	1156
NdeII	GATC	2 cut(s)	96, 1266
NlaIII	CATG	4 cut(s)	271, 1070, 1195, 1273
NlaIV	GGNNCC	3 cut(s)	130, 131, 275
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	2 cut(s)	49, 1147
PagI	TCATGA	1 cut(s)	1066
PctI	GAATGC	1 cut(s)	1184
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	1063
PflMI	CCANNNNNTGG	1 cut(s)	1221
PkrI	GCNGC	7 cut(s)	312, 315, 318, 338, 341, 978, 1199
PleI	GAGTC	2 cut(s)	85, 1173
PpsI	GAGTC	2 cut(s)	85, 1173
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	132
PspEI	GGTNACC	3 cut(s)	49, 803, 1147
PspFI	CCCAGC	1 cut(s)	811
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	130, 131, 275
PspPI	GGNCC	3 cut(s)	129, 259, 1167
PspPPI	RGGWCCY	1 cut(s)	129
PstNI	CAGNNNCTG	2 cut(s)	283, 1221
PvuII	CAGCTG	3 cut(s)	811, 979, 1255
RseI	CAYNNNNRTG	2 cut(s)	567, 1274
SaqAI	TTAA	2 cut(s)	303, 651
SatI	GCNGC	7 cut(s)	311, 314, 317, 337, 340, 977, 1198
Sau3AI	GATC	2 cut(s)	96, 1266
Sau96I	GGNCC	3 cut(s)	129, 259, 1167
SchI	GAGTC	2 cut(s)	85, 1173
ScrFI	CCNGG	2 cut(s)	134, 1156
SduI	GDGCHC	1 cut(s)	198
SinI	GGWCC	2 cut(s)	129, 259
SmiMI	CAYNNNNRTG	2 cut(s)	567, 1274
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	4 cut(s)	187, 328, 412, 646
SsiI	CCGC	5 cut(s)	223, 336, 339, 342, 857
SspMI	CTAG	1 cut(s)	723
StyD4I	CCNGG	2 cut(s)	132, 1154
TaaI	ACNGT	3 cut(s)	849, 1025, 1262
TaqI	TCGA	2 cut(s)	99, 767
TasI	AATT	4 cut(s)	187, 328, 412, 646
TauI	GCSGC	2 cut(s)	339, 342
TfiI	GAWTC	1 cut(s)	1063
Tru1I	TTAA	2 cut(s)	303, 651
Tru9I	TTAA	2 cut(s)	303, 651
TscAI	CASTG	4 cut(s)	854, 1030, 1243, 1281
TseFI	GTSAC	2 cut(s)	49, 1147
TseI	GCWGC	5 cut(s)	310, 313, 316, 976, 1197
Tsp45I	GTSAC	2 cut(s)	49, 1147
TspDTI	ATGAA	3 cut(s)	158, 1055, 1106
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	4 cut(s)	854, 1030, 1243, 1281
Van91I	CCANNNNNTGG	1 cut(s)	1221
VneI	GTGCAC	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	129, 259
XapI	RAATTY	3 cut(s)	187, 412, 646
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.