Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020809.1

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 405

Gene Structure 404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020809.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 404 bp

atggtgcccccaagaagaaagaaatggacggaggccgaggagaggactctgatcgataaatacggcgagatggtggctgatgggaccctggctaagatgaagactagagagaagaagttcaaacccattgcttattatgtgaattctgtgcactatgttcaggaccctgttgcctatcgctggcaatggtcgtggaaagatgtgtccactaaggtccagaacatgaggcaccagtatctgcttgtcaagcagaagattaagaagcagcagccgccggagagtaattccggcggtggcggtggtggggatagtagtggggagtgtagtgtggaggagtttgattggatggaggggcttacacattgggctaatttcttgaggtataaggaggtttttggggatat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.68

Weight (kDa)

9.1

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 228
AciI	CCGC	3 cut(s)	272, 291, 297
AcsI	RAATTY	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	42, 180
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	87
Alw21I	GWGCWC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	33
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	265, 268
ApoI	RAATTY	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	84, 163, 214
AvaII	GGWCC	3 cut(s)	84, 163, 214
BaeGI	GKGCMC	2 cut(s)	9, 153
BanI	GGYRCC	2 cut(s)	4, 228
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	277, 280
BccI	CCATC	3 cut(s)	64, 74, 340
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	89
BfaI	CTAG	1 cut(s)	105
BisI	GCNGC	3 cut(s)	266, 269, 272
BlsI	GCNGC	3 cut(s)	267, 270, 273
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	3 cut(s)	84, 163, 214
BmgT120I	GGNCC	3 cut(s)	84, 163, 214
BmiI	GGNNCC	5 cut(s)	6, 85, 86, 165, 230
BmrFI	CCNGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	397
Bsa29I	ATCGAT	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	36, 87
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 180
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	2 cut(s)	126, 191
BseBI	CCWGG	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	36, 87
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	42, 180
BseMI	GCAATG	2 cut(s)	126, 191
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	2 cut(s)	53, 347
BseSI	GKGCMC	2 cut(s)	9, 153
BseXI	GCAGC	2 cut(s)	277, 280
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	2 cut(s)	4, 228
BshVI	ATCGAT	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	275, 288
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	42, 180
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	9, 153
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	3 cut(s)	272, 291, 297
BspANI	GGCC	1 cut(s)	35
BspDI	ATCGAT	1 cut(s)	54
BspLI	GGNNCC	5 cut(s)	6, 85, 86, 165, 230
BspT107I	GGYRCC	2 cut(s)	4, 228
BsrDI	GCAATG	2 cut(s)	126, 191
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	36, 87
BssMI	GATC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	93, 210
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 271
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSLI	GKGCMC	2 cut(s)	9, 153
BstV1I	GCAGC	2 cut(s)	277, 280
BstV2I	GAAGAC	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	35
BsuTUI	ATCGAT	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	238
Cfr13I	GGNCC	3 cut(s)	84, 163, 214
ClaI	ATCGAT	1 cut(s)	54
CspCI	CAANNNNNGTGG	2 cut(s)	173, 208
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	6 cut(s)	35, 77, 92, 271, 355, 368
CviKI_1	RGCY	6 cut(s)	35, 77, 92, 271, 355, 368
DdeI	CTNAG	2 cut(s)	93, 210
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eco47I	GGWCC	3 cut(s)	84, 163, 214
EcoO109I	RGGNCCY	2 cut(s)	84, 163
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	226
FaiI	YATR	4 cut(s)	138, 156, 224, 384
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	266, 269, 272
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	3 cut(s)	266, 269, 272
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	3 cut(s)	266, 269, 272
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	2 cut(s)	275, 288
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	2 cut(s)	275, 288
Hpy166II	GTNNAC	2 cut(s)	151, 207
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	3 cut(s)	161, 217, 376
Hpy8I	GTNNAC	2 cut(s)	151, 207
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 271
HpyF3I	CTNAG	2 cut(s)	93, 210
Hsp92II	CATG	1 cut(s)	226
KflI	GGGWCCC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	51
LpnPI	CCDG	9 cut(s)	74, 101, 146, 166, 180, 230, 245, 288, 301
Lsp1109I	GCAGC	2 cut(s)	277, 280
MaeI	CTAG	1 cut(s)	105
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	4 cut(s)	27, 112, 124, 265
MhlI	GDGCHC	2 cut(s)	9, 153
MluCI	AATT	3 cut(s)	142, 283, 370
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	8 cut(s)	25, 31, 36, 219, 325, 343, 372, 382
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	258
MspI	CCGG	2 cut(s)	275, 288
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	247, 271
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	5 cut(s)	6, 85, 86, 165, 230
NmeAIII	GCCGAG	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	267, 270, 273
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	2 cut(s)	84, 163
Psp5II	RGGWCCY	2 cut(s)	84, 163
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	5 cut(s)	6, 85, 86, 165, 230
PspPI	GGNCC	3 cut(s)	84, 163, 214
PspPPI	RGGWCCY	2 cut(s)	84, 163
PstNI	CAGNNNCTG	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	3 cut(s)	266, 269, 272
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	3 cut(s)	84, 163, 214
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	9, 153
SetI	ASST	3 cut(s)	216, 383, 393
SinI	GGWCC	3 cut(s)	84, 163, 214
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	3 cut(s)	142, 283, 370
SsiI	CCGC	3 cut(s)	272, 291, 297
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	87
TaqI	TCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	142, 283, 370
TauI	GCSGC	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	2 cut(s)	265, 268
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	3 cut(s)	84, 163, 214
XapI	RAATTY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.