Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Reverse (-)

1755035 .. 1757286

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1016300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGCCGTCGAGAAGAAAGAAGTGGACAGAGTCCGAGGAGAGAACTCTGATCGACAGATATGGAGAGATGGTCTCTGATGGGACCCTTGCTAAAATGAAAACCAGAGAGAAAAAGTTTAAACCCATTGCCTGCTATGTGAATTCTGTGCACCATGTTCGAGACCCGATTGCGTATCGTTGGCAGTGGTCTTGGAAGGATGTTTCCACCAAGGTCCAGAACATGAGGCACCAGTATTTGCTTGTCAAGCAGAAGATTAAGAAGCAGCAACCCGAGTGTAATTCGGGGGGCGGTGGGGGTGGTGGTGGACCTGATGGTGGTGGTAGTAGTGGTGGTGGGAGTGGGGAGTGTAGTGAGGAGGAGTTTGATTGGATGGAGGGCCTTGCGCATTGGTCGAATTTTTTGAGGTATAAGGAGGTTTTTGGGGATGTGGAGATTGTGAGTAATAGTGGTAATGATTTGGTGGTGTCTGTGAATGGGGATGGTGAGAATGGTGGGAGGTTTGTGGGGAGTGGGAGGGGAATGGGGCTTGTGGACTTTGGGCAATTGGGGCATTCAGATGGGGATTTTGGGGCGGGGATTGATGGGGTTGAGAATGCAGTGATGGGTTTGGGATTTGAGTTTGACGGGGAGGAGGGAGAGGAGAATTTTAATCGTTGTGATCGGTTGAGGCAGGATGGAGATGACAAGTTTGTGTTTGAAGAAGTTGAGCAAAATGGTCATAATTTAAAGAAGAGGAAGAAGAAGAGGGAGGTGTCGACGGGGTTGGGAAAGAAGAAGGCATGGGCCTTTCTAGGTAACCAACTGGGCAAGTTGAAGAAAATGGAGGCACGGTTTGAGCATCGCGAGGCAGAGAGAGAACGGGACAGACGGAGGAGTGAGAATTTTAGAATGGAGTGTGAGCAAGAACGAGAGCAGAAATGGGAGGAATGGGCAAATAAAAAGGAGACGCAAGAGAAGACAAGAGAGAAGTTAAAGAAGCAGAGGATTCTAGAATGGGAAGCATTAGCATTAGAGAAGGAGAGTGAAGAGAGAGAAAGAAGAAGAAAAGAGGACGAGTTGATTCATGAGAGGGAATGGGAGGAGAGGATGAATAGGAGGAGAACAGAATGGAAGACGAGGATTGATGAAATGTTGGCTCACCACCGGGCAGAGATGGGCCAGATGCAGACTCGTATTCTTCATGAGCAACAAAGCCTTACAAGCCAGTTACTTGGGATTGTCTCTCAGTGGCCTGCTCATCCAGCTGGACAGTCTGATCATACAAGTGCTAGTAACCATTATTTATCACAAATGATGCAGAACTTGCACCATGTGAATATTTTGGTTCATGATGATGCTAGGGTTGACGGAGAAAATCAAGATGATCAATACATTCTCGATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

462

Amino Acids

53.38

Weight (kDa)

6.08

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	755
AccII	CGCG	1 cut(s)	843
AciI	CCGC	2 cut(s)	288, 572
AcsI	RAATTY	4 cut(s)	139, 394, 643, 880
AdeI	CACNNNGTG	1 cut(s)	1312
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	698, 814
AluBI	AGCT	1 cut(s)	1244
AluI	AGCT	1 cut(s)	1244
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	4 cut(s)	76, 153, 938, 1225
Alw44I	GTGCAC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	4 cut(s)	376, 783, 1156, 1229
ApaLI	GTGCAC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	4 cut(s)	139, 394, 643, 880
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	6 cut(s)	81, 211, 305, 376, 783, 1156
AsuC2I	CCSGG	1 cut(s)	1145
AsuHPI	GGTGA	2 cut(s)	494, 1130
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	3 cut(s)	81, 211, 305
BaeGI	GKGCMC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	962, 1118
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	274
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BclI	TGATCA	2 cut(s)	1255, 1363
BcnI	CCSGG	1 cut(s)	1145
BcoDI	GTCTC	4 cut(s)	76, 153, 938, 1225
BfaI	CTAG	4 cut(s)	791, 989, 1269, 1338
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	1145
Bme18I	GGWCC	3 cut(s)	81, 211, 305
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	6 cut(s)	81, 211, 305, 376, 783, 1156
BmiI	GGNNCC	3 cut(s)	82, 83, 227
BmrFI	CCNGG	1 cut(s)	1145
BmrI	ACTGGG	1 cut(s)	812
BmsI	GCATC	4 cut(s)	847, 1152, 1284, 1324
BmuI	ACTGGG	1 cut(s)	812
BpiI	GAAGAC	2 cut(s)	962, 1118
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpuMI	CCSGG	1 cut(s)	1145
BsaI	GGTCTC	2 cut(s)	76, 153
BsaJI	CCNNGG	2 cut(s)	33, 207
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 815, 845
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	3 cut(s)	229, 807, 1204
Bse3DI	GCAATG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	33, 207
BseGI	GGATG	7 cut(s)	202, 375, 430, 484, 679, 1092, 1237
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	1238
BseNI	ACTGG	3 cut(s)	229, 807, 1204
BseRI	GAGGAG	8 cut(s)	50, 368, 371, 644, 653, 886, 1094, 1111
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	843
BshFI	GGCC	4 cut(s)	378, 785, 1158, 1231
BshNI	GGYRCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	1144
BslFI	GGGAC	2 cut(s)	94, 875
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	4 cut(s)	76, 153, 938, 1225
BsmBI	CGTCTC	1 cut(s)	938
BsmFI	GGGAC	2 cut(s)	94, 875
BsmI	GAATGC	2 cut(s)	550, 598
BsnI	GGCC	4 cut(s)	378, 785, 1158, 1231
Bso31I	GGTCTC	2 cut(s)	76, 153
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	48, 658, 1255, 1363
Bsp68I	TCGCGA	1 cut(s)	843
BspACI	CCGC	2 cut(s)	288, 572
BspANI	GGCC	4 cut(s)	378, 785, 1158, 1231
BspCNI	CTCAG	1 cut(s)	1237
BspFNI	CGCG	1 cut(s)	843
BspHI	TCATGA	3 cut(s)	1063, 1180, 1327
BspLI	GGNNCC	3 cut(s)	82, 83, 227
BspT107I	GGYRCC	1 cut(s)	225
BspTNI	GGTCTC	2 cut(s)	76, 153
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	3 cut(s)	229, 807, 1204
BssECI	CCNNGG	2 cut(s)	33, 207
BssMI	GATC	4 cut(s)	48, 658, 1255, 1363
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	831, 1251
Bst6I	CTCTTC	3 cut(s)	725, 737, 1020
BstAPI	GCANNNNNTGC	1 cut(s)	1303
BstC8I	GCNNGC	2 cut(s)	130, 1233
BstDEI	CTNAG	1 cut(s)	1224
BstEII	GGTNACC	1 cut(s)	794
BstF5I	GGATG	7 cut(s)	202, 375, 430, 484, 679, 1092, 1237
BstFNI	CGCG	1 cut(s)	843
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	4 cut(s)	51, 661, 1258, 1366
BstMAI	GTCTC	4 cut(s)	76, 153, 938, 1225
BstMBI	GATC	4 cut(s)	48, 658, 1255, 1363
BstMWI	GCNNNNNNNGC	5 cut(s)	244, 547, 1200, 1241, 1303
BstPI	GGTNACC	1 cut(s)	794
BstSCI	CCNGG	1 cut(s)	1143
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	1 cut(s)	843
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	2 cut(s)	962, 1118
BstXI	CCANNNNNNTGG	1 cut(s)	1211
BsuRI	GGCC	4 cut(s)	378, 785, 1158, 1231
BtgZI	GCGATG	1 cut(s)	824
BtsCI	GGATG	7 cut(s)	202, 375, 430, 484, 679, 1092, 1237
BtsI	GCAGTG	2 cut(s)	188, 603
BtsIMutI	CAGTG	3 cut(s)	188, 603, 1232
BtuMI	TCGCGA	1 cut(s)	843
Cac8I	GCNNGC	2 cut(s)	130, 1233
CciI	TCATGA	3 cut(s)	1063, 1180, 1327
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	6 cut(s)	81, 211, 305, 376, 783, 1156
CseI	GACGC	1 cut(s)	955
CviAII	CATG	7 cut(s)	152, 220, 780, 1064, 1181, 1310, 1328
CviJI	RGCY	9 cut(s)	378, 526, 785, 1136, 1158, 1194, 1203, 1231, 1244
CviKI_1	RGCY	9 cut(s)	378, 526, 785, 1136, 1158, 1194, 1203, 1231, 1244
DdeI	CTNAG	1 cut(s)	1224
DpnI	GATC	4 cut(s)	50, 660, 1257, 1365
DpnII	GATC	4 cut(s)	48, 658, 1255, 1363
DraI	TTTAAA	2 cut(s)	118, 726
DraIII	CACNNNGTG	1 cut(s)	1312
Eam1104I	CTCTTC	3 cut(s)	725, 737, 1020
EarI	CTCTTC	3 cut(s)	725, 737, 1020
Eco130I	CCWWGG	1 cut(s)	207
Eco31I	GGTCTC	2 cut(s)	76, 153
Eco47I	GGWCC	3 cut(s)	81, 211, 305
Eco88I	CYCGRG	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	794
EcoO109I	RGGNCCY	2 cut(s)	81, 376
EcoO65I	GGTNACC	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	938
FaeI	CATG	7 cut(s)	155, 223, 783, 1067, 1184, 1313, 1331
FaqI	GGGAC	2 cut(s)	94, 875
FatI	CATG	7 cut(s)	151, 219, 779, 1063, 1180, 1309, 1327
FauI	CCCGC	1 cut(s)	565
FbaI	TGATCA	2 cut(s)	1255, 1363
FblI	GTMKAC	1 cut(s)	755
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	7 cut(s)	209, 382, 437, 491, 686, 1099, 1224
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	4 cut(s)	791, 989, 1269, 1338
FspI	TGCGCA	1 cut(s)	384
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	1 cut(s)	263
HaeIII	GGCC	4 cut(s)	378, 785, 1158, 1231
HapII	CCGG	1 cut(s)	1144
HgaI	GACGC	1 cut(s)	955
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	7 cut(s)	155, 223, 783, 1067, 1184, 1313, 1331
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	2 cut(s)	756, 1345
HindII	GTYRAC	2 cut(s)	756, 1345
HinfI	GANTC	4 cut(s)	29, 985, 1060, 1168
HpaII	CCGG	1 cut(s)	1144
HphI	GGTGA	2 cut(s)	494, 1130
Hpy166II	GTNNAC	6 cut(s)	24, 148, 305, 532, 756, 1345
Hpy188I	TCNGA	5 cut(s)	34, 48, 76, 556, 1255
Hpy8I	GTNNAC	6 cut(s)	24, 148, 305, 532, 756, 1345
Hpy99I	CGWCG	2 cut(s)	10, 760
HpyAV	CCTTC	3 cut(s)	187, 769, 1009
HpyCH4III	ACNGT	2 cut(s)	831, 1251
HpyCH4V	TGCA	5 cut(s)	148, 596, 1165, 1297, 1306
HpyF10VI	GCNNNNNNNGC	5 cut(s)	244, 547, 1200, 1241, 1303
HpyF3I	CTNAG	1 cut(s)	1224
Hsp92II	CATG	7 cut(s)	155, 223, 783, 1067, 1184, 1313, 1331
HspAI	GCGC	1 cut(s)	383
KflI	GGGWCCC	1 cut(s)	81
Ksp22I	TGATCA	2 cut(s)	1255, 1363
Kzo9I	GATC	4 cut(s)	48, 658, 1255, 1363
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	4 cut(s)	847, 1152, 1284, 1324
MaeI	CTAG	4 cut(s)	791, 989, 1269, 1338
MaeIII	GTNAC	3 cut(s)	794, 1206, 1271
MalI	GATC	4 cut(s)	50, 660, 1257, 1365
MboI	GATC	4 cut(s)	48, 658, 1255, 1363
MfeI	CAATTG	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	7 cut(s)	139, 277, 394, 542, 643, 721, 880
MlyI	GAGTC	2 cut(s)	38, 1162
MseI	TTAA	5 cut(s)	117, 255, 648, 725, 971
MslI	CAYNNNNRTG	3 cut(s)	555, 1263, 1332
MspA1I	CMGCKG	1 cut(s)	1244
MspI	CCGG	1 cut(s)	1144
MspR9I	CCNGG	1 cut(s)	1145
MssI	GTTTAAAC	1 cut(s)	118
MunI	CAATTG	1 cut(s)	542
Mva1269I	GAATGC	2 cut(s)	550, 598
MvnI	CGCG	1 cut(s)	843
MwoI	GCNNNNNNNGC	5 cut(s)	244, 547, 1200, 1241, 1303
NciI	CCSGG	1 cut(s)	1145
NdeII	GATC	4 cut(s)	48, 658, 1255, 1363
NlaIII	CATG	7 cut(s)	155, 223, 783, 1067, 1184, 1313, 1331
NlaIV	GGNNCC	3 cut(s)	82, 83, 227
NruI	TCGCGA	1 cut(s)	843
NsbI	TGCGCA	1 cut(s)	384
PagI	TCATGA	3 cut(s)	1063, 1180, 1327
PctI	GAATGC	2 cut(s)	550, 598
PfeI	GAWTC	2 cut(s)	985, 1060
PflFI	GACNNNGTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	2 cut(s)	37, 1162
PmeI	GTTTAAAC	1 cut(s)	118
PpsI	GAGTC	2 cut(s)	37, 1162
PpuMI	RGGWCCY	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	794
PspN4I	GGNNCC	3 cut(s)	82, 83, 227
PspPI	GGNCC	6 cut(s)	81, 211, 305, 376, 783, 1156
PspPPI	RGGWCCY	1 cut(s)	81
PsyI	GACNNNGTC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	1244
RruI	TCGCGA	1 cut(s)	843
RseI	CAYNNNNRTG	3 cut(s)	555, 1263, 1332
SalI	GTCGAC	1 cut(s)	754
SaqAI	TTAA	5 cut(s)	117, 255, 648, 725, 971
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	4 cut(s)	48, 658, 1255, 1363
Sau96I	GGNCC	6 cut(s)	81, 211, 305, 376, 783, 1156
SchI	GAGTC	2 cut(s)	38, 1162
ScrFI	CCNGG	1 cut(s)	1145
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	8 cut(s)	213, 310, 407, 417, 500, 753, 796, 1246
SfaNI	GCATC	4 cut(s)	847, 1152, 1284, 1324
SinI	GGWCC	3 cut(s)	81, 211, 305
SmiMI	CAYNNNNRTG	3 cut(s)	555, 1263, 1332
Sse9I	AATT	7 cut(s)	139, 277, 394, 542, 643, 721, 880
SsiI	CCGC	2 cut(s)	288, 572
SspI	AATATT	1 cut(s)	1318
SspMI	CTAG	4 cut(s)	791, 989, 1269, 1338
StyD4I	CCNGG	1 cut(s)	1143
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	831, 1251
TaqI	TCGA	6 cut(s)	8, 51, 157, 392, 755, 1377
TasI	AATT	7 cut(s)	139, 277, 394, 542, 643, 721, 880
TfiI	GAWTC	2 cut(s)	985, 1060
Tru1I	TTAA	5 cut(s)	117, 255, 648, 725, 971
Tru9I	TTAA	5 cut(s)	117, 255, 648, 725, 971
TscAI	CASTG	3 cut(s)	188, 603, 1232
TseI	GCWGC	1 cut(s)	262
TspDTI	ATGAA	6 cut(s)	110, 1052, 1103, 1140, 1169, 1316
TspGWI	ACGGA	2 cut(s)	883, 1362
TspRI	CASTG	3 cut(s)	188, 603, 1232
Tth111I	GACNNNGTC	1 cut(s)	28
VneI	GTGCAC	1 cut(s)	146
VpaK11BI	GGWCC	3 cut(s)	81, 211, 305
XapI	RAATTY	4 cut(s)	139, 394, 643, 880
XbaI	TCTAGA	1 cut(s)	988
XmiI	GTMKAC	1 cut(s)	755
XspI	CTAG	4 cut(s)	791, 989, 1269, 1338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.