Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Forward (+)

1627789 .. 1629144

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom420g01160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGATGTCCTCGAGAAGAAAGAAGTGGACAGAGTCCGAGGAGAGAACTCTGATCGACAGATACGGAGAGATGGTTTCTCATGGGACCCTTGCTAAGATGAAAACTAGAGAGAAAAAGTTTAAACCCATTGCCTGCTATGTGAATTCTGTGCACCATCTTCGAGACCCGATTGCGTATCGTTGGCAGTGGTCTTGGAAGGATGTTTCCACCAAGGTTCAGAACATGAGGCACCAGTATATGCTTGTGAAGCAGAAGATTAAGAAGCAGCAACCCGAGTGTAATTCGGGGGGTGGTGGTGGTGGTGGTGGGAGTGGGGAGTGTAGTGAGGAGGAGTTTGATTGGATGGAGGGCCTCGCACATTGGTCGAATTTTTTGAGGTATAAGGACATTTTTGGGGATGTGGAGATTGTGAGTAATAGGGGTAATGATTTGATGGTGTCTGTGAAGGGGGATGGTGAGAATGGTGGGGGGTTTGTGGGGAGTGGAAGGGGAATGGGGCTTCTGGAGTTTGGGCAATTGGGGCATTCGAATGGGGATTTTGGGGCGGGGATTGATGGGGTTGAGAATGGAGTGATGGGTTTGGGATTTGAGTACGACGGGGAGGAGGGACGGGAGAATTTTAATAGTAATGATCGGTTGAGGCAGAATGGAGATGACAAGTTTGTGTGCGAAGGAGTGGAGCAAGGTGGTCATAATTTAAAGCAGAGGAAGAAGAAGAAGAGGGAGGTGTCGACGGGGTTGGGAAAGAAGAAGGCATGGGCCTTTCTATGTAACCAACTGGGCAAGTTGAAGGAAATGGAGGCACGGTTTGAGCATGGCGAGGCAGCGAGAGAACGGGACAGACAGAGGAGTGAGAATTTTAGAATGGAGTGTGAGCAAGAACGAGAATGGAAATGGGAGGAATGGGCAAACAAAAAGGAGACGAAAGGGAAGACAAGAGAGAAGTTAAAGAAGCAGAGGATTTTAGAATGGGAGGCATTGGAGAAGGAGAGTGAAGAGAGAGAAAGAAGAAGGAAAGAGGAAGAGTTGATTCATGAGAGGGAATGGGAGGAGAGGATGAATAGGAGGAGAACAGAATGGAAGATGAGGATTGACGAAATGTTGGGTCACCACCGGGCAGCGATGGGCCAGATGCAGACTCGTATTCTTCACGAGCAACAAAACCTTATGAGCCAGTTACTTGGGATTGTCTCCCAGTGGACTGCTCATCCAGCTGGACTGTCTGATCATACAAATGCTAGTAACCATTATTTATCACAAATGATGCAGAACTTGCACCATGTGAATAGTTTGGTTCATGACGATGCTAGGGTTGAAGGAGAAAATCAAGATGATCAATTCATTGTCGATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

452

Amino Acids

52.46

Weight (kDa)

6.83

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	731
AciI	CCGC	1 cut(s)	545
AcsI	RAATTY	4 cut(s)	142, 367, 616, 856
AdeI	CACNNNGTG	1 cut(s)	1282
AfaI	GTAC	1 cut(s)	593
AgsI	TTSAA	2 cut(s)	790, 1316
AluBI	AGCT	1 cut(s)	1214
AluI	AGCT	1 cut(s)	1214
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	3 cut(s)	156, 914, 1195
Alw44I	GTGCAC	1 cut(s)	149
Ama87I	CYCGRG	2 cut(s)	10, 272
AoxI	GGCC	3 cut(s)	349, 759, 1126
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	265, 824, 1118
ApoI	RAATTY	4 cut(s)	142, 367, 616, 856
AspS9I	GGNCC	4 cut(s)	84, 349, 759, 1126
AsuC2I	CCSGG	1 cut(s)	1115
AsuHPI	GGTGA	2 cut(s)	467, 1100
AsuII	TTCGAA	1 cut(s)	527
AvaI	CYCGRG	2 cut(s)	10, 272
AvaII	GGWCC	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	1151
BbsI	GAAGAC	1 cut(s)	938
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	277, 836, 1130
BccI	CCATC	9 cut(s)	64, 162, 337, 427, 446, 548, 568, 1117, 1343
BcgI	CGANNNNNNTGC	4 cut(s)	140, 174, 345, 379
BclI	TGATCA	2 cut(s)	1225, 1333
BcnI	CCSGG	1 cut(s)	1115
BcoDI	GTCTC	3 cut(s)	156, 914, 1195
BfaI	CTAG	3 cut(s)	105, 1239, 1308
BisI	GCNGC	3 cut(s)	266, 825, 1119
BlsI	GCNGC	3 cut(s)	267, 826, 1120
Bme1390I	CCNGG	1 cut(s)	1115
Bme18I	GGWCC	1 cut(s)	84
BmeT110I	CYCGRG	2 cut(s)	10, 272
BmgT120I	GGNCC	4 cut(s)	84, 349, 759, 1126
BmiI	GGNNCC	3 cut(s)	85, 86, 230
BmrFI	CCNGG	1 cut(s)	1115
BmrI	ACTGGG	2 cut(s)	788, 1189
BmsI	GCATC	3 cut(s)	1122, 1254, 1294
BmuI	ACTGGG	2 cut(s)	788, 1189
BpiI	GAAGAC	1 cut(s)	938
BpmI	CTGGAG	1 cut(s)	524
Bpu14I	TTCGAA	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	1115
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	36, 210
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 791, 821
Bse1I	ACTGG	4 cut(s)	232, 783, 1174, 1195
Bse3DI	GCAATG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	36, 210
BseGI	GGATG	6 cut(s)	205, 348, 403, 457, 1062, 1207
BseMI	GCAATG	1 cut(s)	126
BseNI	ACTGG	4 cut(s)	232, 783, 1174, 1195
BseRI	GAGGAG	7 cut(s)	53, 341, 344, 617, 862, 1064, 1081
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	277, 836, 1130
BshFI	GGCC	3 cut(s)	351, 761, 1128
BshNI	GGYRCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	2 cut(s)	10, 272
BsiSI	CCGG	1 cut(s)	1114
BslFI	GGGAC	3 cut(s)	97, 621, 851
BsmAI	GTCTC	3 cut(s)	156, 914, 1195
BsmBI	CGTCTC	1 cut(s)	914
BsmFI	GGGAC	3 cut(s)	97, 621, 851
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	3 cut(s)	351, 761, 1128
Bso31I	GGTCTC	1 cut(s)	156
BsoBI	CYCGRG	2 cut(s)	10, 272
Bsp119I	TTCGAA	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	4 cut(s)	51, 631, 1225, 1333
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	3 cut(s)	351, 761, 1128
BspHI	TCATGA	2 cut(s)	1033, 1297
BspLI	GGNNCC	3 cut(s)	85, 86, 230
BspT104I	TTCGAA	1 cut(s)	527
BspT107I	GGYRCC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	4 cut(s)	232, 783, 1174, 1195
BssECI	CCNNGG	2 cut(s)	36, 210
BssMI	GATC	4 cut(s)	51, 631, 1225, 1333
BssSI	CACGAG	1 cut(s)	1151
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	1151
Bst4CI	ACNGT	2 cut(s)	807, 1221
Bst6I	CTCTTC	3 cut(s)	713, 990, 1017
BstAPI	GCANNNNNTGC	1 cut(s)	1273
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	93
BstEII	GGTNACC	1 cut(s)	1106
BstF5I	GGATG	6 cut(s)	205, 348, 403, 457, 1062, 1207
BstKTI	GATC	4 cut(s)	54, 634, 1228, 1336
BstMAI	GTCTC	3 cut(s)	156, 914, 1195
BstMBI	GATC	4 cut(s)	51, 631, 1225, 1333
BstMWI	GCNNNNNNNGC	4 cut(s)	247, 520, 1211, 1273
BstPI	GGTNACC	1 cut(s)	1106
BstSCI	CCNGG	1 cut(s)	1113
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	277, 836, 1130
BstV2I	GAAGAC	1 cut(s)	938
BstXI	CCANNNNNNTGG	1 cut(s)	1181
BsuRI	GGCC	3 cut(s)	351, 761, 1128
BtgZI	GCGATG	1 cut(s)	1136
BtsCI	GGATG	6 cut(s)	205, 348, 403, 457, 1062, 1207
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	2 cut(s)	191, 1202
Cac8I	GCNNGC	1 cut(s)	133
CciI	TCATGA	2 cut(s)	1033, 1297
Cfr13I	GGNCC	4 cut(s)	84, 349, 759, 1126
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	7 cut(s)	80, 223, 756, 815, 1034, 1280, 1298
CviJI	RGCY	6 cut(s)	351, 499, 761, 1128, 1173, 1214
CviKI_1	RGCY	6 cut(s)	351, 499, 761, 1128, 1173, 1214
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	4 cut(s)	53, 633, 1227, 1335
DpnII	GATC	4 cut(s)	51, 631, 1225, 1333
DraI	TTTAAA	2 cut(s)	121, 699
DraIII	CACNNNGTG	1 cut(s)	1282
Eam1104I	CTCTTC	3 cut(s)	713, 990, 1017
EarI	CTCTTC	3 cut(s)	713, 990, 1017
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	84
Eco88I	CYCGRG	2 cut(s)	10, 272
Eco91I	GGTNACC	1 cut(s)	1106
EcoO109I	RGGNCCY	2 cut(s)	84, 349
EcoO65I	GGTNACC	1 cut(s)	1106
EcoRI	GAATTC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	914
FaeI	CATG	7 cut(s)	83, 226, 759, 818, 1037, 1283, 1301
FaqI	GGGAC	3 cut(s)	97, 621, 851
FatI	CATG	7 cut(s)	79, 222, 755, 814, 1033, 1279, 1297
FauI	CCCGC	1 cut(s)	538
FbaI	TGATCA	2 cut(s)	1225, 1333
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	3 cut(s)	266, 825, 1119
FokI	GGATG	6 cut(s)	212, 355, 410, 464, 1069, 1194
Fsp4HI	GCNGC	3 cut(s)	266, 825, 1119
FspBI	CTAG	3 cut(s)	105, 1239, 1308
GluI	GCNGC	3 cut(s)	266, 825, 1119
GsuI	CTGGAG	1 cut(s)	524
HaeIII	GGCC	3 cut(s)	351, 761, 1128
HapII	CCGG	1 cut(s)	1114
Hin1II	CATG	7 cut(s)	83, 226, 759, 818, 1037, 1283, 1301
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	3 cut(s)	32, 1030, 1138
HpaII	CCGG	1 cut(s)	1114
HphI	GGTGA	2 cut(s)	467, 1100
Hpy166II	GTNNAC	4 cut(s)	27, 151, 732, 1200
Hpy188I	TCNGA	4 cut(s)	37, 51, 219, 1225
Hpy188III	TCNNGA	7 cut(s)	12, 161, 503, 1034, 1151, 1298, 1328
Hpy8I	GTNNAC	4 cut(s)	27, 151, 732, 1200
Hpy99I	CGWCG	2 cut(s)	599, 736
HpyAV	CCTTC	9 cut(s)	190, 439, 480, 665, 745, 784, 979, 1005, 1310
HpyCH4III	ACNGT	2 cut(s)	807, 1221
HpyCH4V	TGCA	4 cut(s)	151, 1135, 1267, 1276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	247, 520, 1211, 1273
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	7 cut(s)	83, 226, 759, 818, 1037, 1283, 1301
KflI	GGGWCCC	1 cut(s)	84
Ksp22I	TGATCA	2 cut(s)	1225, 1333
Kzo9I	GATC	4 cut(s)	51, 631, 1225, 1333
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	3 cut(s)	277, 836, 1130
LweI	GCATC	3 cut(s)	1122, 1254, 1294
MaeI	CTAG	3 cut(s)	105, 1239, 1308
MaeIII	GTNAC	4 cut(s)	770, 1106, 1176, 1241
MalI	GATC	4 cut(s)	53, 633, 1227, 1335
MboI	GATC	4 cut(s)	51, 631, 1225, 1333
MfeI	CAATTG	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	8 cut(s)	142, 280, 367, 515, 616, 694, 856, 1337
MlyI	GAGTC	2 cut(s)	41, 1132
MseI	TTAA	5 cut(s)	120, 258, 621, 698, 947
MslI	CAYNNNNRTG	3 cut(s)	528, 1233, 1302
MspA1I	CMGCKG	1 cut(s)	1214
MspI	CCGG	1 cut(s)	1114
MspR9I	CCNGG	1 cut(s)	1115
MssI	GTTTAAAC	1 cut(s)	121
MunI	CAATTG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	523
MwoI	GCNNNNNNNGC	4 cut(s)	247, 520, 1211, 1273
NciI	CCSGG	1 cut(s)	1115
NdeII	GATC	4 cut(s)	51, 631, 1225, 1333
NlaIII	CATG	7 cut(s)	83, 226, 759, 818, 1037, 1283, 1301
NlaIV	GGNNCC	3 cut(s)	85, 86, 230
NmuCI	GTSAC	1 cut(s)	1106
NspV	TTCGAA	1 cut(s)	527
PaeR7I	CTCGAG	1 cut(s)	10
PagI	TCATGA	2 cut(s)	1033, 1297
PctI	GAATGC	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	1030
PflFI	GACNNNGTC	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	267, 826, 1120
PleI	GAGTC	2 cut(s)	40, 1132
PmeI	GTTTAAAC	1 cut(s)	121
PpsI	GAGTC	2 cut(s)	40, 1132
PpuMI	RGGWCCY	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	84
PspEI	GGTNACC	1 cut(s)	1106
PspN4I	GGNNCC	3 cut(s)	85, 86, 230
PspPI	GGNCC	4 cut(s)	84, 349, 759, 1126
PspPPI	RGGWCCY	1 cut(s)	84
PsyI	GACNNNGTC	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	1214
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	3 cut(s)	528, 1233, 1302
SalI	GTCGAC	1 cut(s)	730
SaqAI	TTAA	5 cut(s)	120, 258, 621, 698, 947
SatI	GCNGC	3 cut(s)	266, 825, 1119
Sau3AI	GATC	4 cut(s)	51, 631, 1225, 1333
Sau96I	GGNCC	4 cut(s)	84, 349, 759, 1126
SchI	GAGTC	2 cut(s)	41, 1132
ScrFI	CCNGG	1 cut(s)	1115
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	6 cut(s)	216, 380, 688, 729, 1167, 1216
SfaNI	GCATC	3 cut(s)	1122, 1254, 1294
Sfr274I	CTCGAG	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	527
SinI	GGWCC	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	10
SmiMI	CAYNNNNRTG	3 cut(s)	528, 1233, 1302
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	8 cut(s)	142, 280, 367, 515, 616, 694, 856, 1337
SsiI	CCGC	1 cut(s)	545
SspMI	CTAG	3 cut(s)	105, 1239, 1308
StyD4I	CCNGG	1 cut(s)	1113
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	807, 1221
TaqI	TCGA	7 cut(s)	11, 54, 160, 365, 527, 731, 1347
TasI	AATT	8 cut(s)	142, 280, 367, 515, 616, 694, 856, 1337
TfiI	GAWTC	1 cut(s)	1030
Tru1I	TTAA	5 cut(s)	120, 258, 621, 698, 947
Tru9I	TTAA	5 cut(s)	120, 258, 621, 698, 947
TscAI	CASTG	2 cut(s)	191, 1202
TseFI	GTSAC	1 cut(s)	1106
TseI	GCWGC	3 cut(s)	265, 824, 1118
Tsp45I	GTSAC	1 cut(s)	1106
TspDTI	ATGAA	5 cut(s)	113, 1022, 1073, 1286, 1330
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	191, 1202
Tth111I	GACNNNGTC	1 cut(s)	31
VneI	GTGCAC	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	4 cut(s)	142, 367, 616, 856
XhoI	CTCGAG	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	731
XspI	CTAG	3 cut(s)	105, 1239, 1308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.