Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006428.1

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Reverse (-)

88654 .. 89318

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006428.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggcagacggggagcctccggaacatagagaacgtctggaggggtttacacattggagagtgtgtgaacaagcggagcagaagcggaagagggaggtttcaactgcgttgggaaagaaggcgtgggattttattggtaaccagctgggcaagttgagggaaatggaggcacggtttgaacagcgtgaggcggagagggaaagggagagacagaggagtgagagttttagaatggagtgtgagcaagaacgggaatggaaatgggaggaatgggtgaagaaggaggaggagaaagaaaaggcaagggagcagttgaagaagcagaggattcaagaatgggaagcacttgagaaggacagaggaggtcagaatggaagaagaggatcaccaccgggcagagatgggccaaatcttacgagccagctactggggattgtctctcggtggactgctcatccagctggactgtctgatcataccggtgcaaccaaccattatttatcacagatggtgcagaatttgcaccatgtgaatagtttggatcatgacgatgctagggttgatggagataatcaagatgatcagttcattgctgacggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

23.54

Weight (kDa)

5.7

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	3 cut(s)	74, 85, 191
AclWI	GGATC	2 cut(s)	391, 549
AcsI	RAATTY	1 cut(s)	517
AdeI	CACNNNGTG	1 cut(s)	529
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgeI	ACCGGT	1 cut(s)	479
AgsI	TTSAA	4 cut(s)	102, 179, 316, 332
AluBI	AGCT	3 cut(s)	145, 424, 461
AluI	AGCT	3 cut(s)	145, 424, 461
Alw26I	GTCTC	2 cut(s)	202, 442
AlwI	GGATC	2 cut(s)	391, 549
AlwNI	CAGNNNCTG	1 cut(s)	427
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	517
AsiGI	ACCGGT	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	404
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	286, 378
BccI	CCATC	3 cut(s)	395, 502, 557
BclI	TGATCA	2 cut(s)	472, 580
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	202, 442
BfaI	CTAG	1 cut(s)	555
Bme1390I	CCNGG	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	393
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	1 cut(s)	541
BmuI	ACTGGG	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	393
BsaWI	WCCGGW	2 cut(s)	19, 479
BsaXI	ACNNNNNCTCC	6 cut(s)	49, 79, 158, 188, 208, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	19
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	588
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	4 cut(s)	229, 299, 302, 375
BseYI	CCCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	533
BshFI	GGCC	1 cut(s)	406
BshTI	ACCGGT	1 cut(s)	479
BsiSI	CCGG	3 cut(s)	20, 392, 480
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	202, 442
BsnI	GGCC	1 cut(s)	406
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	383, 472, 541, 580
BspACI	CCGC	3 cut(s)	74, 85, 191
BspANI	GGCC	1 cut(s)	406
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	391, 549
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	432
BssAI	RCCGGY	1 cut(s)	479
BssMI	GATC	4 cut(s)	383, 472, 541, 580
Bst4CI	ACNGT	2 cut(s)	174, 468
Bst6I	CTCTTC	2 cut(s)	83, 373
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	422
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	454
BstKTI	GATC	4 cut(s)	386, 475, 544, 583
BstMAI	GTCTC	2 cut(s)	202, 442
BstMBI	GATC	4 cut(s)	383, 472, 541, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 520
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	422
CaiI	CAGNNNCTG	1 cut(s)	427
CciI	TCATGA	1 cut(s)	544
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	404
CspAI	ACCGGT	1 cut(s)	479
CviAII	CATG	2 cut(s)	527, 545
CviJI	RGCY	6 cut(s)	16, 145, 406, 420, 424, 461
CviKI_1	RGCY	6 cut(s)	16, 145, 406, 420, 424, 461
DpnI	GATC	4 cut(s)	385, 474, 543, 582
DpnII	GATC	4 cut(s)	383, 472, 541, 580
DraIII	CACNNNGTG	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	83, 373
EarI	CTCTTC	2 cut(s)	83, 373
EciI	GGCGGA	1 cut(s)	206
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
FaeI	CATG	2 cut(s)	530, 548
FaiI	YATR	4 cut(s)	27, 477, 528, 546
FatI	CATG	2 cut(s)	526, 544
FbaI	TGATCA	2 cut(s)	472, 580
FokI	GGATG	1 cut(s)	441
FspBI	CTAG	1 cut(s)	555
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	3 cut(s)	20, 392, 480
Hin1II	CATG	2 cut(s)	530, 548
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	3 cut(s)	20, 392, 480
HphI	GGTGA	2 cut(s)	286, 378
Hpy166II	GTNNAC	3 cut(s)	48, 68, 447
Hpy188I	TCNGA	2 cut(s)	369, 472
Hpy188III	TCNNGA	5 cut(s)	20, 38, 332, 545, 575
Hpy8I	GTNNAC	3 cut(s)	48, 68, 447
HpyAV	CCTTC	3 cut(s)	112, 274, 346
HpyCH4III	ACNGT	2 cut(s)	174, 468
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	485, 514, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 520
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	2 cut(s)	530, 548
Kpn2I	TCCGGA	1 cut(s)	19
Ksp22I	TGATCA	2 cut(s)	472, 580
Kzo9I	GATC	4 cut(s)	383, 472, 541, 580
LmnI	GCTCC	3 cut(s)	13, 76, 307
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	4 cut(s)	385, 474, 543, 582
MboI	GATC	4 cut(s)	383, 472, 541, 580
MboII	GAAGA	5 cut(s)	100, 289, 328, 387, 390
MluCI	AATT	1 cut(s)	517
MroI	TCCGGA	1 cut(s)	19
MslI	CAYNNNNRTG	2 cut(s)	480, 549
MspA1I	CMGCKG	2 cut(s)	145, 461
MspI	CCGG	3 cut(s)	20, 392, 480
MspR9I	CCNGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	458, 520
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	4 cut(s)	383, 472, 541, 580
NlaIII	CATG	2 cut(s)	530, 548
NlaIV	GGNNCC	1 cut(s)	15
PagI	TCATGA	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	328
PflMI	CCANNNNNTGG	1 cut(s)	427
PinAI	ACCGGT	1 cut(s)	479
PspEI	GGTNACC	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	404
PstNI	CAGNNNCTG	1 cut(s)	427
PvuII	CAGCTG	2 cut(s)	145, 461
RseI	CAYNNNNRTG	2 cut(s)	480, 549
Sau3AI	GATC	4 cut(s)	383, 472, 541, 580
Sau96I	GGNCC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	393
SetI	ASST	6 cut(s)	37, 99, 147, 367, 426, 463
SfaNI	GCATC	1 cut(s)	541
SmiMI	CAYNNNNRTG	2 cut(s)	480, 549
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	517
SsiI	CCGC	3 cut(s)	74, 85, 191
SspMI	CTAG	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	174, 468
TaiI	ACGT	1 cut(s)	37
TasI	AATT	1 cut(s)	517
TfiI	GAWTC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	577
Van91I	CCANNNNNTGG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	517
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.