Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006536.1

Orthogroup ID

OG0005914

Physical Location & Seq

Genomic Coordinates Reverse (-)

68845 .. 69273

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006536.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atggtttgtgaagaagctgagcagaatggtaagcactcaccttcttctctactttgctgcgcaattcagatgttttctcgatctgggtccgtccaattccggctctttggggttttgttgcatgctctttggggtttcaagattgaaatggtgcccccaagaagaaagaaatggacggaggccgaggagaggactctgatcgataaatacggggagatggtggctgatgggaccctggctaagatgaagaccagagagaagatgttcaaacccattgcttattatgtgaattctgtgcactgtgttcaggaccctgttgcctatcgctggcaatggtcgtggaaagaacaggaatggaaatgggaggaatgggtgaagaagaagggaccagctgaagaagcagaggattcaagaatgggcagcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.69

Weight (kDa)

8.32

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400 FvH4_4g13400
malus_domestica	MD04G1016300.v1.1 MD13G1282300.v1.1
prunus_persica	Prupe.1G163000_v2.0.a1
pyrus_communis	pycom04g01230 pycom420g01160
rosa_chinensis	RchiOBHm_Chr4g0413771
rosa_laevigata	RLG00000008193 RLG00000008194
rosa_multiflora	Rmu_sc0006428.1_g000014 Rmu_sc0006536.1_g000016 Rmu_sc0006536.1_g000017 Rmu_sc0006536.1_g000030 Rmu_sc0008092.1_g000003 Rmu_sc0020809.1_g000001
rosa_rugosa	Rorug04G0123200
rosa_wichuraiana	Rw4G015310 Rw4G015420 Rw4G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	189, 327
AgsI	TTSAA	4 cut(s)	139, 146, 268, 411
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	17, 392
AluI	AGCT	2 cut(s)	17, 392
Alw21I	GWGCWC	1 cut(s)	300
Alw44I	GTGCAC	1 cut(s)	296
AoxI	GGCC	1 cut(s)	180
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	57, 420
ApoI	RAATTY	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	4 cut(s)	87, 231, 310, 386
AsuHPI	GGTGA	2 cut(s)	30, 385
AvaII	GGWCC	4 cut(s)	87, 231, 310, 386
BaeGI	GKGCMC	2 cut(s)	156, 300
BanI	GGYRCC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	2 cut(s)	211, 221
BciT130I	CCWGG	1 cut(s)	236
BisI	GCNGC	2 cut(s)	58, 421
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	2 cut(s)	59, 422
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	4 cut(s)	87, 231, 310, 386
BmgT120I	GGNCC	4 cut(s)	87, 231, 310, 386
BmiI	GGNNCC	6 cut(s)	88, 153, 232, 233, 312, 387
BmrFI	CCNGG	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	18
Bsa29I	ATCGAT	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	183, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 327
Bse3DI	GCAATG	2 cut(s)	273, 338
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	183, 234
BseLI	CCNNNNNNNGG	2 cut(s)	189, 327
BseMI	GCAATG	2 cut(s)	273, 338
BseMII	CTCAG	1 cut(s)	9
BseRI	GAGGAG	1 cut(s)	200
BseSI	GKGCMC	2 cut(s)	156, 300
BseXI	GCAGC	1 cut(s)	44
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	151
BshVI	ATCGAT	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	2 cut(s)	244, 399
BslI	CCNNNNNNNGG	2 cut(s)	189, 327
BsmFI	GGGAC	2 cut(s)	244, 399
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	156, 300
Bsp143I	GATC	2 cut(s)	80, 198
Bsp1720I	GCTNAGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	10
BspDI	ATCGAT	1 cut(s)	201
BspLI	GGNNCC	6 cut(s)	88, 153, 232, 233, 312, 387
BspT107I	GGYRCC	1 cut(s)	151
BsrDI	GCAATG	2 cut(s)	273, 338
BssECI	CCNNGG	2 cut(s)	183, 234
BssMI	GATC	2 cut(s)	80, 198
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	123, 329
BstDEI	CTNAG	2 cut(s)	18, 240
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	2 cut(s)	83, 201
BstMBI	GATC	2 cut(s)	80, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	234
BstSLI	GKGCMC	2 cut(s)	156, 300
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	254
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	182
BsuTUI	ATCGAT	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	123, 329
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	4 cut(s)	87, 231, 310, 386
ClaI	ATCGAT	1 cut(s)	201
CspCI	CAANNNNNGTGG	2 cut(s)	320, 355
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	6 cut(s)	17, 103, 182, 224, 239, 392
CviKI_1	RGCY	6 cut(s)	17, 103, 182, 224, 239, 392
DdeI	CTNAG	2 cut(s)	18, 240
DpnI	GATC	2 cut(s)	82, 200
DpnII	GATC	2 cut(s)	80, 198
Eco47I	GGWCC	4 cut(s)	87, 231, 310, 386
Eco57I	CTGAAG	1 cut(s)	414
EcoO109I	RGGNCCY	2 cut(s)	231, 310
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	234
FaeI	CATG	1 cut(s)	125
FaiI	YATR	2 cut(s)	123, 285
FaqI	GGGAC	2 cut(s)	244, 399
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	58, 421
Fsp4HI	GCNGC	2 cut(s)	58, 421
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	2 cut(s)	58, 421
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	2 cut(s)	193, 407
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	2 cut(s)	30, 385
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	69, 198
Hpy188III	TCNNGA	4 cut(s)	78, 139, 308, 411
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	51, 376
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	2 cut(s)	121, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	18, 240
Hsp92II	CATG	1 cut(s)	125
HspAI	GCGC	1 cut(s)	60
KflI	GGGWCCC	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	80, 198
Lsp1109I	GCAGC	1 cut(s)	44
MalI	GATC	2 cut(s)	82, 200
MboI	GATC	2 cut(s)	80, 198
MboII	GAAGA	8 cut(s)	23, 36, 174, 259, 271, 388, 391, 407
MhlI	GDGCHC	2 cut(s)	156, 300
MluCI	AATT	3 cut(s)	63, 95, 289
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	172, 178, 183, 358, 397
MroXI	GAANNNNTTC	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	2 cut(s)	80, 198
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	6 cut(s)	88, 153, 232, 233, 312, 387
NmeAIII	GCCGAG	1 cut(s)	208
NsbI	TGCGCA	1 cut(s)	61
NspI	RCATGY	1 cut(s)	125
PaeI	GCATGC	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	2 cut(s)	59, 422
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PpuMI	RGGWCCY	2 cut(s)	231, 310
Psp5II	RGGWCCY	2 cut(s)	231, 310
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	6 cut(s)	88, 153, 232, 233, 312, 387
PspPI	GGNCC	4 cut(s)	87, 231, 310, 386
PspPPI	RGGWCCY	2 cut(s)	231, 310
PvuII	CAGCTG	1 cut(s)	392
SatI	GCNGC	2 cut(s)	58, 421
Sau3AI	GATC	2 cut(s)	80, 198
Sau96I	GGNCC	4 cut(s)	87, 231, 310, 386
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	2 cut(s)	156, 300
SetI	ASST	3 cut(s)	19, 43, 394
SinI	GGWCC	4 cut(s)	87, 231, 310, 386
SphI	GCATGC	1 cut(s)	125
Sse9I	AATT	3 cut(s)	63, 95, 289
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	79, 201
TasI	AATT	3 cut(s)	63, 95, 289
TfiI	GAWTC	1 cut(s)	407
TscAI	CASTG	1 cut(s)	305
TseI	GCWGC	2 cut(s)	57, 420
TspDTI	ATGAA	1 cut(s)	260
TspGWI	ACGGA	2 cut(s)	79, 191
TspRI	CASTG	1 cut(s)	305
VneI	GTGCAC	1 cut(s)	296
VpaK11BI	GGWCC	4 cut(s)	87, 231, 310, 386
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.