Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009679

Physical Location & Seq

Genomic Coordinates Forward (+)

18671556 .. 18678429

Gene Structure 6874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGTCTTTTACACGTCATTTCCGCTCAGAAGGGGGCACTACTTGTGATGAGTATTGGCCCTCGTTCAGTCGAAACAACTCCAGAAGCTTCAACAGCAATGCCAGACACAACAACAAGACCAACTACAATGAAAACTGGAACATGAGCAGGAACAATAACTTTGTTCACGATCATTACAACTTGCAGTATTATATGGGAAATTATAGGGAGCGTGCCGATAGTTCCCATGCTCCCAATCATTTCAAGCCTGATGGTGCTCCATCCTATAAGAGGAGAAAATTTTCAGCTTCTACTTGGGGTGATGATGGGAGACATTATCTGCCCGCAAACACGTATGATTTCGCTCCCTCAACCTGCAACAGTTATGTCCCTCCTGCAAGATCCAAAGGCAATGCCTCTGCATCTACCACCTGTAAACGTGACCGCTCAAAATTAGAAGAGGACGAAGTTGCCTTTATGTCAAGGGATGAGATTGAGCGATTCTCCCCATCTAGAAAAGATGGTATAGATGCATTACGTGAGGCACATTTACGATACTCATATTGTTCTTACCTTCAGGATCTTGGTCTGCGGCTGGACTTGCCACAGACCACTATTGCTACTGCAATGGTTCTCTGCCATCGTTTCTTTGCTCGGCGATCACATGCTTGCCATGACAGATTTTTGATTGCCACTTCTGTTCTCTTTCTTGCTGCAAAGTCCGAGGAGACACCTCGCCCTTTGAATAACGTTGTAAGGGTAGCTTGTGAGATTTTCCATAAGCAGGATATCAGTCTCTTGTCCTATATACTTCCTGTGGACTGGTTTGAGCAGTATCGGGAACGGGTGACTGAGGCTGAGCATATGATACTGGCTACTCTAAATTTTGAACTGAATGTGCAGCATCCATATGATCCACTTACCTCGATTCTTAATAAATTAGGGCTGTCACAAACTGTTTTGGTGAATCTGGCCTTAAGCTTGGTCAGTGAAGGGCTTCGGAGTTCATTGTGGCTTCAGTTCAAACCGCATCATATTGCTGCTGGAGCTGCCTATCTTGCCGCAAAGTTTCTAAATTTGGATCTGAAACCATATCAAAATATCTGGCAGGAATTCCAGGCTACACCAGATGTCCTTCATGATGTGTCCCAGCAATTGATGGAACTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

384

Amino Acids

44.27

Weight (kDa)

7.7

Isoelectric Point (pI)

62.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	152 - 292	6e-14	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15100 FvH4_4g15100
malus_domestica	MD13G1188600.v1.1 MD16G1189200.v1.1
prunus_persica	Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1
pyrus_communis	pycom13g16300 pycom16g15920
rosa_chinensis	RchiOBHm_Chr4g0416761
rosa_laevigata	RLG00000007953
rosa_multiflora	Rmu_sc0036474.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360640
rosa_rugosa	Rorug04G0144600 Rorug04G0144700 Rorug04G0144800
rosa_samantha	Rh4AG207300 Rh4BG204500 Rh4CG218300 Rh4DG204400
rosa_wichuraiana	Rw4G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	362
AccBSI	CCGCTC	2 cut(s)	24, 426
AciI	CCGC	6 cut(s)	22, 324, 424, 571, 1007, 1041
AclI	AACGTT	1 cut(s)	729
AclWI	GGATC	4 cut(s)	375, 567, 887, 1068
AcsI	RAATTY	4 cut(s)	278, 862, 1054, 1091
AcuI	CTGAAG	2 cut(s)	539, 980
AfiI	CCNNNNNNNGG	2 cut(s)	270, 763
AflII	CTTAAG	1 cut(s)	955
AflIII	ACRYGT	2 cut(s)	11, 330
AgsI	TTSAA	5 cut(s)	91, 244, 724, 869, 1003
AjiI	CACGTC	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	1095
AluBI	AGCT	5 cut(s)	87, 287, 743, 960, 1028
AluI	AGCT	5 cut(s)	87, 287, 743, 960, 1028
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	3 cut(s)	304, 701, 779
AlwI	GGATC	4 cut(s)	375, 567, 887, 1068
AoxI	GGCC	2 cut(s)	56, 951
ApeKI	GCWGC	4 cut(s)	692, 880, 1019, 1028
ApoI	RAATTY	4 cut(s)	278, 862, 1054, 1091
Asp700I	GAANNNNTTC	2 cut(s)	280, 975
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	311, 838, 955
BaeGI	GKGCMC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	4 cut(s)	679, 892, 1006, 1015
BccI	CCATC	7 cut(s)	245, 268, 299, 494, 496, 627, 1132
BciT130I	CCWGG	1 cut(s)	1097
BcoDI	GTCTC	3 cut(s)	304, 701, 779
BfaI	CTAG	1 cut(s)	492
BfrI	CTTAAG	1 cut(s)	955
BfuAI	ACCTGC	1 cut(s)	362
BisI	GCNGC	6 cut(s)	572, 693, 881, 1020, 1029, 1041
BlpI	GCTNAGC	1 cut(s)	837
BlsI	GCNGC	6 cut(s)	573, 694, 882, 1021, 1030, 1042
Bme1390I	CCNGG	1 cut(s)	1097
BmgBI	CACGTC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	1097
BmsI	GCATC	4 cut(s)	410, 499, 892, 1018
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
BpmI	CTGGAG	2 cut(s)	64, 1044
Bpu1102I	GCTNAGC	1 cut(s)	837
BsaAI	YACGTR	2 cut(s)	333, 518
BsaJI	CCNNGG	1 cut(s)	702
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 763
Bse1I	ACTGG	3 cut(s)	140, 806, 855
Bse3DI	GCAATG	3 cut(s)	103, 397, 612
BseBI	CCWGG	1 cut(s)	1097
BseDI	CCNNGG	1 cut(s)	702
BseGI	GGATG	3 cut(s)	260, 472, 883
BseLI	CCNNNNNNNGG	2 cut(s)	270, 763
BseMI	GCAATG	3 cut(s)	103, 397, 612
BseMII	CTCAG	3 cut(s)	39, 822, 828
BseNI	ACTGG	3 cut(s)	140, 806, 855
BseRI	GAGGAG	2 cut(s)	286, 719
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	4 cut(s)	679, 892, 1006, 1015
BseYI	CCCAGC	1 cut(s)	1128
BsgI	GTGCAG	1 cut(s)	899
BshFI	GGCC	2 cut(s)	58, 953
BsiHKAI	GWGCWC	1 cut(s)	259
BslFI	GGGAC	2 cut(s)	353, 1111
BslI	CCNNNNNNNGG	2 cut(s)	270, 763
BsmAI	GTCTC	3 cut(s)	304, 701, 779
BsmFI	GGGAC	2 cut(s)	353, 1111
BsnI	GGCC	2 cut(s)	58, 953
Bsp1286I	GDGCHC	2 cut(s)	38, 259
Bsp143I	GATC	6 cut(s)	169, 380, 559, 638, 892, 1060
Bsp1720I	GCTNAGC	1 cut(s)	837
BspACI	CCGC	6 cut(s)	22, 324, 424, 571, 1007, 1041
BspANI	GGCC	2 cut(s)	58, 953
BspCNI	CTCAG	3 cut(s)	38, 823, 829
BspHI	TCATGA	1 cut(s)	1117
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	4 cut(s)	375, 567, 887, 1068
BspTI	CTTAAG	1 cut(s)	955
BsrBI	CCGCTC	2 cut(s)	24, 426
BsrDI	GCAATG	3 cut(s)	103, 397, 612
BsrI	ACTGG	3 cut(s)	140, 806, 855
BssECI	CCNNGG	1 cut(s)	702
BssMI	GATC	6 cut(s)	169, 380, 559, 638, 892, 1060
Bst2UI	CCWGG	1 cut(s)	1097
Bst4CI	ACNGT	2 cut(s)	362, 937
Bst6I	CTCTTC	1 cut(s)	432
BstAFI	CTTAAG	1 cut(s)	955
BstBAI	YACGTR	2 cut(s)	333, 518
BstC8I	GCNNGC	3 cut(s)	213, 324, 649
BstDEI	CTNAG	3 cut(s)	25, 831, 837
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstF5I	GGATG	3 cut(s)	260, 472, 883
BstKTI	GATC	6 cut(s)	172, 383, 562, 641, 895, 1063
BstMAI	GTCTC	3 cut(s)	304, 701, 779
BstMBI	GATC	6 cut(s)	169, 380, 559, 638, 892, 1060
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 580, 1025, 1028, 1037
BstNI	CCWGG	1 cut(s)	1097
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	1095
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	4 cut(s)	679, 892, 1006, 1015
BstX2I	RGATCY	3 cut(s)	380, 559, 1060
BstYI	RGATCY	3 cut(s)	380, 559, 1060
BsuRI	GGCC	2 cut(s)	58, 953
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	3 cut(s)	260, 472, 883
BtsIMutI	CAGTG	1 cut(s)	973
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	3 cut(s)	213, 324, 649
CciI	TCATGA	1 cut(s)	1117
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	5 cut(s)	142, 227, 644, 653, 1118
DdeI	CTNAG	3 cut(s)	25, 831, 837
DpnI	GATC	6 cut(s)	171, 382, 561, 640, 894, 1062
DpnII	GATC	6 cut(s)	169, 380, 559, 638, 892, 1060
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	769
Eco57I	CTGAAG	2 cut(s)	539, 980
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	1091
EcoRII	CCWGG	1 cut(s)	1095
EcoRV	GATATC	1 cut(s)	769
EcoT22I	ATGCAT	1 cut(s)	514
FaeI	CATG	5 cut(s)	145, 230, 647, 656, 1121
FalI	AAGNNNNNCTT	2 cut(s)	727, 759
FaqI	GGGAC	2 cut(s)	353, 1111
FatI	CATG	5 cut(s)	141, 226, 643, 652, 1117
FauI	CCCGC	1 cut(s)	331
FauNDI	CATATG	2 cut(s)	843, 889
Fnu4HI	GCNGC	6 cut(s)	572, 693, 881, 1020, 1029, 1041
FokI	GGATG	3 cut(s)	247, 479, 870
Fsp4HI	GCNGC	6 cut(s)	572, 693, 881, 1020, 1029, 1041
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	6 cut(s)	572, 693, 881, 1020, 1029, 1041
GsaI	CCCAGC	1 cut(s)	1132
GsuI	CTGGAG	2 cut(s)	64, 1044
HaeIII	GGCC	2 cut(s)	58, 953
Hin1II	CATG	5 cut(s)	145, 230, 647, 656, 1121
HindIII	AAGCTT	2 cut(s)	85, 958
HinfI	GANTC	3 cut(s)	480, 907, 946
HphI	GGTGA	3 cut(s)	311, 838, 955
Hpy166II	GTNNAC	3 cut(s)	166, 416, 799
Hpy188I	TCNGA	4 cut(s)	28, 703, 981, 1065
Hpy188III	TCNNGA	6 cut(s)	81, 167, 492, 557, 818, 1118
Hpy8I	GTNNAC	3 cut(s)	166, 416, 799
HpyAV	CCTTC	4 cut(s)	23, 563, 965, 1124
HpyCH4III	ACNGT	2 cut(s)	362, 937
HpyCH4IV	ACGT	5 cut(s)	13, 332, 418, 517, 729
HpyCH4V	TGCA	8 cut(s)	184, 357, 377, 401, 512, 605, 695, 880
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 580, 1025, 1028, 1037
HpyF3I	CTNAG	3 cut(s)	25, 831, 837
HpySE526I	ACGT	5 cut(s)	13, 332, 418, 517, 729
Hsp92II	CATG	5 cut(s)	145, 230, 647, 656, 1121
Kzo9I	GATC	6 cut(s)	169, 380, 559, 638, 892, 1060
LmnI	GCTCC	5 cut(s)	208, 235, 262, 349, 1025
Lsp1109I	GCAGC	4 cut(s)	679, 892, 1006, 1015
LweI	GCATC	4 cut(s)	410, 499, 892, 1018
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	5 cut(s)	13, 332, 418, 517, 729
MaeIII	GTNAC	3 cut(s)	419, 826, 927
MalI	GATC	6 cut(s)	171, 382, 561, 640, 894, 1062
MbiI	CCGCTC	2 cut(s)	24, 426
MboI	GATC	6 cut(s)	169, 380, 559, 638, 892, 1060
MboII	GAAGA	2 cut(s)	449, 1138
MfeI	CAATTG	1 cut(s)	1133
MflI	RGATCY	3 cut(s)	380, 559, 1060
MhlI	GDGCHC	2 cut(s)	38, 259
MluCI	AATT	8 cut(s)	199, 278, 431, 862, 917, 1054, 1091, 1133
Mph1103I	ATGCAT	1 cut(s)	514
MroXI	GAANNNNTTC	2 cut(s)	280, 975
MseI	TTAA	2 cut(s)	912, 956
MslI	CAYNNNNRTG	1 cut(s)	888
MspCI	CTTAAG	1 cut(s)	955
MspR9I	CCNGG	1 cut(s)	1097
MunI	CAATTG	1 cut(s)	1133
MvaI	CCWGG	1 cut(s)	1097
MwoI	GCNNNNNNNGC	5 cut(s)	93, 580, 1025, 1028, 1037
NdeI	CATATG	2 cut(s)	843, 889
NdeII	GATC	6 cut(s)	169, 380, 559, 638, 892, 1060
NlaIII	CATG	5 cut(s)	145, 230, 647, 656, 1121
NmeAIII	GCCGAG	1 cut(s)	613
NmuCI	GTSAC	3 cut(s)	419, 826, 927
NsiI	ATGCAT	1 cut(s)	514
NspI	RCATGY	1 cut(s)	647
PagI	TCATGA	1 cut(s)	1117
PdmI	GAANNNNTTC	2 cut(s)	280, 975
PfeI	GAWTC	3 cut(s)	480, 907, 946
PkrI	GCNGC	6 cut(s)	573, 694, 882, 1021, 1030, 1042
Ppu21I	YACGTR	2 cut(s)	333, 518
Psp1406I	AACGTT	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	1095
PspFI	CCCAGC	1 cut(s)	1128
PspGI	CCWGG	1 cut(s)	1095
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	3 cut(s)	380, 559, 1060
RseI	CAYNNNNRTG	1 cut(s)	888
SaqAI	TTAA	2 cut(s)	912, 956
SatI	GCNGC	6 cut(s)	572, 693, 881, 1020, 1029, 1041
Sau3AI	GATC	6 cut(s)	169, 380, 559, 638, 892, 1060
Sau96I	GGNCC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	1097
SduI	GDGCHC	2 cut(s)	38, 259
SfaNI	GCATC	4 cut(s)	410, 499, 892, 1018
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	1 cut(s)	955
SmoI	CTYRAG	1 cut(s)	955
Sse9I	AATT	8 cut(s)	199, 278, 431, 862, 917, 1054, 1091, 1133
SsiI	CCGC	6 cut(s)	22, 324, 424, 571, 1007, 1041
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	1095
TaaI	ACNGT	2 cut(s)	362, 937
TaiI	ACGT	5 cut(s)	16, 335, 421, 520, 732
TaqI	TCGA	2 cut(s)	70, 905
TasI	AATT	8 cut(s)	199, 278, 431, 862, 917, 1054, 1091, 1133
TauI	GCSGC	2 cut(s)	574, 1043
TfiI	GAWTC	3 cut(s)	480, 907, 946
Tru1I	TTAA	2 cut(s)	912, 956
Tru9I	TTAA	2 cut(s)	912, 956
TscAI	CASTG	1 cut(s)	973
TseFI	GTSAC	3 cut(s)	419, 826, 927
TseI	GCWGC	4 cut(s)	692, 880, 1019, 1028
Tsp45I	GTSAC	3 cut(s)	419, 826, 927
TspDTI	ATGAA	3 cut(s)	144, 975, 1106
TspRI	CASTG	1 cut(s)	973
Vha464I	CTTAAG	1 cut(s)	955
XagI	CCTNNNNNAGG	1 cut(s)	268
XapI	RAATTY	4 cut(s)	278, 862, 1054, 1091
XbaI	TCTAGA	1 cut(s)	491
XceI	RCATGY	1 cut(s)	647
XmnI	GAANNNNTTC	2 cut(s)	280, 975
XspI	CTAG	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.