Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0009679

Physical Location & Seq

Genomic Coordinates Reverse (-)

39476888 .. 39482475

Gene Structure 5588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G017530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTCTTTTACACGTCACTTCCGCTCAGAAGGGGGCACTACTCGCGATGAGTATTGGCCGTCATTCAGTAGAAGCAACTCCAAAAGCTTCAATAGCAATGCCAGACACAACAACAAGACCAACTACAATAACAACTGGAACATGAGCAGGAACAATAACTTTGTTAGGAATCATTACGATTTTCAGTATTACATGGGAAATTATAGAGAGCATGCCGATAATTCTAATCATTTCAAGCCAGACGGTGCACCATCCTATAAAAGGAGAAAATTTTCAGCTTCTACTTGGGGTGATGCTGGGAGACATTATCTGCCACCAAACACATCCAATGGCATTGCCTCTGCATCTACCACCTGTAAACGTGACCGCTCAAAATTAGAAGAGGATGAAGTTGCCTTTATGTCAAGGGATGAGATTGAGAGATACTCCCCATCTAGAAAAGATGGTATAGATGCAGCACGTGAGGCACATTTGCGATACTCATATTGTTCGTACCTTCAGGATCTTGGTTTGCGGCTGGACTTGCCACAGACCACGATTGCTACTGCAATGGTTCTCTGCCACCGTTTTTTTGCTCGGCGATCACATGCTTGCCATGACAGATTTTTGATTGCCACTGCTGTTCTCTTTCTTGCTGCAAAGTCTGAGGAGACACCTCGCCCTTTGAATAACGTAGTGAGGGCATCTTGTGAGATTTTCCATAAGCAGGATATCAGTCTCTTGTCCTATATACTCCCTGTTGACTGGTTTGAGCAGTATCGGGAACGGGTGACTGAGGCTGAGCATATGATACTGGCTACTCTAAATTTTGAACTGAATGTGCAGCATCCATATGCTCCTCTTACCTCAATACTTGATAAATTAGGGCTCTCACAAACTGTTTTGGTGAATCTGGCCTTAAGCTTGGTCAGTGAAGGGCTTCGGAGTTCATTGTGGCTTCAGTTCAAACCGCATCATATTGCTGCTGGAGCTGCCTACCTTGCCGCGAAGTTTCTAAATTTGGATCTGAAACCTTATCAAAATATTTGGCAAGAGTTCCAGGCTACACCAGATGTCCTTCAAGATGTGTCCCAGCAGTTGATGGAACTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

364

Amino Acids

42.1

Weight (kDa)

8.48

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	132 - 273	4.6e-14	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15100 FvH4_4g15100
malus_domestica	MD13G1188600.v1.1 MD16G1189200.v1.1
prunus_persica	Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1
pyrus_communis	pycom13g16300 pycom16g15920
rosa_chinensis	RchiOBHm_Chr4g0416761
rosa_laevigata	RLG00000007953
rosa_multiflora	Rmu_sc0036474.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360640
rosa_rugosa	Rorug04G0144600 Rorug04G0144700 Rorug04G0144800
rosa_samantha	Rh4AG207300 Rh4BG204500 Rh4CG218300 Rh4DG204400
rosa_wichuraiana	Rw4G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	24, 369
AccII	CGCG	2 cut(s)	45, 986
AciI	CCGC	5 cut(s)	22, 367, 514, 950, 984
AclWI	GGATC	2 cut(s)	510, 1011
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	3 cut(s)	269, 805, 997
AcuI	CTGAAG	2 cut(s)	482, 923
AcvI	CACGTG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	261, 706
AflII	CTTAAG	1 cut(s)	898
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	6 cut(s)	91, 235, 667, 812, 946, 1061
AjiI	CACGTC	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	1038
AluBI	AGCT	4 cut(s)	87, 278, 903, 971
AluI	AGCT	4 cut(s)	87, 278, 903, 971
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	3 cut(s)	295, 644, 722
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	510, 1011
AoxI	GGCC	2 cut(s)	56, 894
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	5 cut(s)	455, 635, 823, 962, 971
ApoI	RAATTY	3 cut(s)	269, 805, 997
Asp700I	GAANNNNTTC	2 cut(s)	271, 918
AsuHPI	GGTGA	3 cut(s)	302, 781, 898
BaeGI	GKGCMC	2 cut(s)	38, 250
BanII	GRGCYC	1 cut(s)	870
BbrPI	CACGTG	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	5 cut(s)	467, 622, 835, 949, 958
BccI	CCATC	4 cut(s)	259, 437, 439, 1075
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	1040
BcoDI	GTCTC	3 cut(s)	295, 644, 722
BfaI	CTAG	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	898
BisI	GCNGC	7 cut(s)	456, 515, 636, 824, 963, 972, 984
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	7 cut(s)	457, 516, 637, 825, 964, 973, 985
Bme1390I	CCNGG	1 cut(s)	1040
BmgBI	CACGTC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	1040
BmsI	GCATC	6 cut(s)	283, 353, 442, 692, 835, 961
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpmI	CTGGAG	1 cut(s)	987
Bpu1102I	GCTNAGC	1 cut(s)	780
BsaAI	YACGTR	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 706
Bse1I	ACTGG	3 cut(s)	140, 749, 798
Bse3DI	GCAATG	3 cut(s)	103, 333, 555
BseBI	CCWGG	1 cut(s)	1040
BseGI	GGATG	5 cut(s)	251, 323, 391, 415, 826
BseLI	CCNNNNNNNGG	2 cut(s)	261, 706
BseMI	GCAATG	3 cut(s)	103, 333, 555
BseMII	CTCAG	4 cut(s)	39, 636, 765, 771
BseNI	ACTGG	3 cut(s)	140, 749, 798
BseRI	GAGGAG	2 cut(s)	662, 828
BseSI	GKGCMC	2 cut(s)	38, 250
BseXI	GCAGC	5 cut(s)	467, 622, 835, 949, 958
BseYI	CCCAGC	2 cut(s)	296, 1071
BsgI	GTGCAG	1 cut(s)	842
Bsh1236I	CGCG	2 cut(s)	45, 986
BshFI	GGCC	2 cut(s)	58, 896
BsiHKAI	GWGCWC	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	1054
BslI	CCNNNNNNNGG	2 cut(s)	261, 706
BsmAI	GTCTC	3 cut(s)	295, 644, 722
BsmFI	GGGAC	1 cut(s)	1054
BsnI	GGCC	2 cut(s)	58, 896
Bsp1286I	GDGCHC	3 cut(s)	38, 250, 870
Bsp143I	GATC	3 cut(s)	502, 581, 1003
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp68I	TCGCGA	1 cut(s)	45
BspACI	CCGC	5 cut(s)	22, 367, 514, 950, 984
BspANI	GGCC	2 cut(s)	58, 896
BspCNI	CTCAG	4 cut(s)	38, 637, 766, 772
BspFNI	CGCG	2 cut(s)	45, 986
BspPI	GGATC	2 cut(s)	510, 1011
BspTI	CTTAAG	1 cut(s)	898
BsrBI	CCGCTC	2 cut(s)	24, 369
BsrDI	GCAATG	3 cut(s)	103, 333, 555
BsrI	ACTGG	3 cut(s)	140, 749, 798
BssMI	GATC	3 cut(s)	502, 581, 1003
Bst2UI	CCWGG	1 cut(s)	1040
Bst4CI	ACNGT	3 cut(s)	245, 566, 880
Bst6I	CTCTTC	1 cut(s)	375
BstAFI	CTTAAG	1 cut(s)	898
BstBAI	YACGTR	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	213, 592
BstDEI	CTNAG	4 cut(s)	25, 645, 774, 780
BstENI	CCTNNNNNAGG	1 cut(s)	259
BstF5I	GGATG	5 cut(s)	251, 323, 391, 415, 826
BstFNI	CGCG	2 cut(s)	45, 986
BstKTI	GATC	3 cut(s)	505, 584, 1006
BstMAI	GTCTC	3 cut(s)	295, 644, 722
BstMBI	GATC	3 cut(s)	502, 581, 1003
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 93, 464, 523, 968, 971, 980
BstNI	CCWGG	1 cut(s)	1040
BstNSI	RCATGY	2 cut(s)	215, 590
BstSCI	CCNGG	1 cut(s)	1038
BstSLI	GKGCMC	2 cut(s)	38, 250
BstUI	CGCG	2 cut(s)	45, 986
BstV1I	GCAGC	5 cut(s)	467, 622, 835, 949, 958
BstX2I	RGATCY	2 cut(s)	502, 1003
BstYI	RGATCY	2 cut(s)	502, 1003
BsuRI	GGCC	2 cut(s)	58, 896
BtgZI	GCGATG	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	5 cut(s)	251, 323, 391, 415, 826
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	615, 916
BtuMI	TCGCGA	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	213, 592
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	5 cut(s)	142, 193, 212, 587, 596
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	4 cut(s)	25, 645, 774, 780
DpnI	GATC	3 cut(s)	504, 583, 1005
DpnII	GATC	3 cut(s)	502, 581, 1003
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	870
Eco32I	GATATC	1 cut(s)	712
Eco57I	CTGAAG	2 cut(s)	482, 923
Eco72I	CACGTG	1 cut(s)	461
EcoNI	CCTNNNNNAGG	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	1038
EcoRV	GATATC	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	870
FaeI	CATG	5 cut(s)	145, 196, 215, 590, 599
FaqI	GGGAC	1 cut(s)	1054
FatI	CATG	5 cut(s)	141, 192, 211, 586, 595
FauNDI	CATATG	2 cut(s)	786, 832
Fnu4HI	GCNGC	7 cut(s)	456, 515, 636, 824, 963, 972, 984
FokI	GGATG	5 cut(s)	238, 310, 398, 422, 813
FriOI	GRGCYC	1 cut(s)	870
Fsp4HI	GCNGC	7 cut(s)	456, 515, 636, 824, 963, 972, 984
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	7 cut(s)	456, 515, 636, 824, 963, 972, 984
GsaI	CCCAGC	2 cut(s)	300, 1075
GsuI	CTGGAG	1 cut(s)	987
HaeIII	GGCC	2 cut(s)	58, 896
Hin1II	CATG	5 cut(s)	145, 196, 215, 590, 599
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	2 cut(s)	85, 901
HinfI	GANTC	2 cut(s)	169, 889
HphI	GGTGA	3 cut(s)	302, 781, 898
Hpy166II	GTNNAC	3 cut(s)	248, 359, 742
Hpy188I	TCNGA	4 cut(s)	28, 646, 924, 1008
Hpy188III	TCNNGA	5 cut(s)	44, 435, 500, 761, 1061
Hpy8I	GTNNAC	3 cut(s)	248, 359, 742
HpyAV	CCTTC	4 cut(s)	23, 506, 908, 1067
HpyCH4III	ACNGT	3 cut(s)	245, 566, 880
HpyCH4IV	ACGT	4 cut(s)	13, 361, 460, 672
HpyCH4V	TGCA	6 cut(s)	248, 344, 455, 548, 638, 823
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 93, 464, 523, 968, 971, 980
HpyF3I	CTNAG	4 cut(s)	25, 645, 774, 780
HpySE526I	ACGT	4 cut(s)	13, 361, 460, 672
Hsp92II	CATG	5 cut(s)	145, 196, 215, 590, 599
Kzo9I	GATC	3 cut(s)	502, 581, 1003
LmnI	GCTCC	2 cut(s)	841, 968
Lsp1109I	GCAGC	5 cut(s)	467, 622, 835, 949, 958
LweI	GCATC	6 cut(s)	283, 353, 442, 692, 835, 961
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	4 cut(s)	13, 361, 460, 672
MaeIII	GTNAC	3 cut(s)	14, 362, 769
MalI	GATC	3 cut(s)	504, 583, 1005
MbiI	CCGCTC	2 cut(s)	24, 369
MboI	GATC	3 cut(s)	502, 581, 1003
MboII	GAAGA	2 cut(s)	392, 1081
MflI	RGATCY	2 cut(s)	502, 1003
MhlI	GDGCHC	3 cut(s)	38, 250, 870
MluCI	AATT	7 cut(s)	199, 220, 269, 374, 805, 860, 997
MnlI	CCTC	9 cut(s)	349, 376, 457, 640, 666, 672, 769, 849, 856
MroXI	GAANNNNTTC	2 cut(s)	271, 918
MseI	TTAA	1 cut(s)	899
MslI	CAYNNNNRTG	1 cut(s)	831
MspCI	CTTAAG	1 cut(s)	898
MspR9I	CCNGG	1 cut(s)	1040
MvaI	CCWGG	1 cut(s)	1040
MvnI	CGCG	2 cut(s)	45, 986
MwoI	GCNNNNNNNGC	7 cut(s)	42, 93, 464, 523, 968, 971, 980
NdeI	CATATG	2 cut(s)	786, 832
NdeII	GATC	3 cut(s)	502, 581, 1003
NlaIII	CATG	5 cut(s)	145, 196, 215, 590, 599
NmeAIII	GCCGAG	1 cut(s)	556
NmuCI	GTSAC	3 cut(s)	14, 362, 769
NruI	TCGCGA	1 cut(s)	45
NspI	RCATGY	2 cut(s)	215, 590
PaeI	GCATGC	1 cut(s)	215
PdmI	GAANNNNTTC	2 cut(s)	271, 918
PfeI	GAWTC	2 cut(s)	169, 889
PkrI	GCNGC	7 cut(s)	457, 516, 637, 825, 964, 973, 985
PmaCI	CACGTG	1 cut(s)	461
PmlI	CACGTG	1 cut(s)	461
Ppu21I	YACGTR	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	1038
PspCI	CACGTG	1 cut(s)	461
PspFI	CCCAGC	2 cut(s)	296, 1071
PspGI	CCWGG	1 cut(s)	1038
PsuI	RGATCY	2 cut(s)	502, 1003
RruI	TCGCGA	1 cut(s)	45
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	831
SaqAI	TTAA	1 cut(s)	899
SatI	GCNGC	7 cut(s)	456, 515, 636, 824, 963, 972, 984
Sau3AI	GATC	3 cut(s)	502, 581, 1003
ScrFI	CCNGG	1 cut(s)	1040
SduI	GDGCHC	3 cut(s)	38, 250, 870
SfaNI	GCATC	6 cut(s)	283, 353, 442, 692, 835, 961
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	1 cut(s)	898
SmoI	CTYRAG	1 cut(s)	898
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	7 cut(s)	199, 220, 269, 374, 805, 860, 997
SsiI	CCGC	5 cut(s)	22, 367, 514, 950, 984
SspI	AATATT	1 cut(s)	1024
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	1038
TaaI	ACNGT	3 cut(s)	245, 566, 880
TaiI	ACGT	4 cut(s)	16, 364, 463, 675
TasI	AATT	7 cut(s)	199, 220, 269, 374, 805, 860, 997
TauI	GCSGC	2 cut(s)	517, 986
TfiI	GAWTC	2 cut(s)	169, 889
Tru1I	TTAA	1 cut(s)	899
Tru9I	TTAA	1 cut(s)	899
TscAI	CASTG	2 cut(s)	622, 916
TseFI	GTSAC	3 cut(s)	14, 362, 769
TseI	GCWGC	5 cut(s)	455, 635, 823, 962, 971
Tsp45I	GTSAC	3 cut(s)	14, 362, 769
TspDTI	ATGAA	2 cut(s)	402, 918
TspRI	CASTG	2 cut(s)	622, 916
Vha464I	CTTAAG	1 cut(s)	898
VneI	GTGCAC	1 cut(s)	246
XagI	CCTNNNNNAGG	1 cut(s)	259
XapI	RAATTY	3 cut(s)	269, 805, 997
XbaI	TCTAGA	1 cut(s)	434
XceI	RCATGY	2 cut(s)	215, 590
XmnI	GAANNNNTTC	2 cut(s)	271, 918
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.