Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009679

Physical Location & Seq

Genomic Coordinates Reverse (-)

24053981 .. 24054181

Gene Structure 201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0144800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGTGCCGAAAGCAACCAGGAATAGCGATTGGAAGGTTGTGCAAAAAGTATGATAGTAAGTGTGTGTTGTGCGATTCTATGGTACGTCCTTGCACTCTTGTTTGGATCTATGATGAGTGCAACTATGGATCGTTCCAACTTCCAAGGGCAGTGTGTCATGTGTGGAGGGGTTGGAATTTCTTATGCTGCTTATTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

66

Amino Acids

7.71

Weight (kDa)

8.82

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHF5	PF03660	1 - 54	3.1e-15	PHF5-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15100 FvH4_4g15100
malus_domestica	MD13G1188600.v1.1 MD16G1189200.v1.1
prunus_persica	Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1
pyrus_communis	pycom13g16300 pycom16g15920
rosa_chinensis	RchiOBHm_Chr4g0416761
rosa_laevigata	RLG00000007953
rosa_multiflora	Rmu_sc0036474.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360640
rosa_rugosa	Rorug04G0144600 Rorug04G0144700 Rorug04G0144800
rosa_samantha	Rh4AG207300 Rh4BG204500 Rh4CG218300 Rh4DG204400
rosa_wichuraiana	Rw4G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	113, 136
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	1 cut(s)	84
AjnI	CCWGG	1 cut(s)	16
AlwI	GGATC	2 cut(s)	113, 136
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	18
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	105, 128
BspPI	GGATC	2 cut(s)	113, 136
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	2 cut(s)	105, 128
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	198
BstKTI	GATC	2 cut(s)	108, 131
BstMBI	GATC	2 cut(s)	105, 128
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	1 cut(s)	158
CviQI	GTAC	1 cut(s)	83
DpnI	GATC	2 cut(s)	107, 130
DpnII	GATC	2 cut(s)	105, 128
Eco130I	CCWWGG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	1 cut(s)	161
FaiI	YATR	6 cut(s)	51, 80, 111, 126, 159, 184
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	42, 93, 120
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	105, 128
LpnPI	CCDG	2 cut(s)	3, 30
Lsp1109I	GCAGC	1 cut(s)	173
MaeII	ACGT	1 cut(s)	85
MalI	GATC	2 cut(s)	107, 130
MboI	GATC	2 cut(s)	105, 128
MflI	RGATCY	1 cut(s)	105
MluCI	AATT	1 cut(s)	175
MmeI	TCCRAC	2 cut(s)	152, 160
MnlI	CCTC	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	105, 128
NlaIII	CATG	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	2 cut(s)	105, 128
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	2 cut(s)	38, 88
SgeI	CNNG	6 cut(s)	29, 30, 102, 110, 156, 170
Sse9I	AATT	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	88
TasI	AATT	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	74
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	1 cut(s)	186
TspRI	CASTG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.