Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009679

Physical Location & Seq

Genomic Coordinates Reverse (-)

41924988 .. 41931856

Gene Structure 6869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38688

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCTTTTACACGTCACTTTCGCTCAGAAGGGGGCACTACTCGCGATGAGTATTGGCCGTCATTCAGTAGAAGCAACTCCAAAAGCTTCAATAGCAATGCCAGACACAACAACAAGACCAACTACAATAACAACTGGAACATGAGCAGGAACAATAACTTTGTTAGGAATCATTACGATTTTCAGTATTACATGGGAAATTATAGAGAGCATGTCGATAATTCTAATCATTTCAAGCCAGACGGTGCACCATCCTATAAAAGGAGAAAATTTTCAGCTTCTACTTGGGGTGATGGTGGGAGACATTATCTGCCACCAAACACGTATGATTTCACTCCTTCAACCTGCAATAATTATGTCCCTCCTACAAGATCCAATGGCATTGCCTCTGCGTCTACCTCTTGTAAACGTGACCGCTCAAAATTAGAAGAGGATGAAGTTGCCTTTATGTCAAGGGATGAGATTGAGAGATACTCCCCATCTAGGAAAGATGGTATAGATGCAGCACGTGAGGCACATTTGCGATACTCATATTGTTCGTACCTTCAGGATCTTGGTTTGCGGCTGGACTTGCCACAGACCACGATTGCTACTGCAATGGTTCTCTGCCACCGTTTTTTTGCTCGGCGATCACATGCTTGCCATGACAGATTTTTGATTGCCACTGCTGTTCTCTTTCTTGCTGCAAAGTCTGAGGAGACACCTCGCCCTTTGAATAACGTAGTGAGGGCATCTTGTGAGATTTTCCATAAGCAGGATATCAGTCTCTTGTCCTATATACTCCCTGTTGACTGGTTTGAGCAGTATCGGGAACGGGTGACTGAGGCTGAGCATATGATACTGGCTACTCTAAATTTTGAACTGAATGTGCAGCATCCATATGCTCCTCTTACCTCAATACTTGATAAATTAGGGCTCTCACAAACTGTTTTGGTGAATCTGGCCTTAAGCTTGGTCAGTGAAGGGCTTCGGAGTTCATTGTGGCTTCAGTTCAAACCACATCATATTGCTGCTGGAGCTGCCTACCTTGCCGCGAAGTTTCTAAATTTGGATCTGAAACCTTATCAAAATATTTGGCAAGAGTTCCAGGCTACACCAGATGTCCTTCAAGATGTGTCCCAGCAGTTGATGGAACTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

380

Amino Acids

43.96

Weight (kDa)

8.42

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	148 - 289	5.1e-14	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15100 FvH4_4g15100
malus_domestica	MD13G1188600.v1.1 MD16G1189200.v1.1
prunus_persica	Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1
pyrus_communis	pycom13g16300 pycom16g15920
rosa_chinensis	RchiOBHm_Chr4g0416761
rosa_laevigata	RLG00000007953
rosa_multiflora	Rmu_sc0036474.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360640
rosa_rugosa	Rorug04G0144600 Rorug04G0144700 Rorug04G0144800
rosa_samantha	Rh4AG207300 Rh4BG204500 Rh4CG218300 Rh4DG204400
rosa_wichuraiana	Rw4G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	2 cut(s)	45, 1034
AciI	CCGC	3 cut(s)	415, 562, 1032
AclWI	GGATC	3 cut(s)	366, 558, 1059
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	3 cut(s)	269, 853, 1045
AcuI	CTGAAG	2 cut(s)	530, 971
AcvI	CACGTG	1 cut(s)	509
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	261, 483, 754
AflII	CTTAAG	1 cut(s)	946
AflIII	ACRYGT	2 cut(s)	11, 321
AgsI	TTSAA	7 cut(s)	91, 235, 342, 715, 860, 994, 1109
AjiI	CACGTC	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	1086
AluBI	AGCT	4 cut(s)	87, 278, 951, 1019
AluI	AGCT	4 cut(s)	87, 278, 951, 1019
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	3 cut(s)	295, 692, 770
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	3 cut(s)	366, 558, 1059
AoxI	GGCC	2 cut(s)	56, 942
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	5 cut(s)	503, 683, 871, 1010, 1019
ApoI	RAATTY	3 cut(s)	269, 853, 1045
Asp700I	GAANNNNTTC	2 cut(s)	271, 966
AsuHPI	GGTGA	3 cut(s)	302, 829, 946
BaeGI	GKGCMC	2 cut(s)	38, 250
BanII	GRGCYC	1 cut(s)	918
BbrPI	CACGTG	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	5 cut(s)	515, 670, 883, 997, 1006
BccI	CCATC	5 cut(s)	259, 287, 485, 487, 1123
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	1088
BcoDI	GTCTC	3 cut(s)	295, 692, 770
BfaI	CTAG	1 cut(s)	483
BfrI	CTTAAG	1 cut(s)	946
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	7 cut(s)	504, 563, 684, 872, 1011, 1020, 1032
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	7 cut(s)	505, 564, 685, 873, 1012, 1021, 1033
Bme1390I	CCNGG	1 cut(s)	1088
BmgBI	CACGTC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	1088
BmsI	GCATC	3 cut(s)	490, 740, 883
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	1 cut(s)	1035
Bpu1102I	GCTNAGC	1 cut(s)	828
BsaAI	YACGTR	2 cut(s)	324, 509
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 483, 754
Bse1I	ACTGG	3 cut(s)	140, 797, 846
Bse3DI	GCAATG	3 cut(s)	103, 381, 603
BseBI	CCWGG	1 cut(s)	1088
BseGI	GGATG	4 cut(s)	251, 439, 463, 874
BseLI	CCNNNNNNNGG	3 cut(s)	261, 483, 754
BseMI	GCAATG	3 cut(s)	103, 381, 603
BseMII	CTCAG	4 cut(s)	39, 684, 813, 819
BseNI	ACTGG	3 cut(s)	140, 797, 846
BseRI	GAGGAG	2 cut(s)	710, 876
BseSI	GKGCMC	2 cut(s)	38, 250
BseXI	GCAGC	5 cut(s)	515, 670, 883, 997, 1006
BseYI	CCCAGC	1 cut(s)	1119
BsgI	GTGCAG	1 cut(s)	890
Bsh1236I	CGCG	2 cut(s)	45, 1034
BshFI	GGCC	2 cut(s)	58, 944
BsiHKAI	GWGCWC	1 cut(s)	250
BslFI	GGGAC	2 cut(s)	344, 1102
BslI	CCNNNNNNNGG	3 cut(s)	261, 483, 754
BsmAI	GTCTC	3 cut(s)	295, 692, 770
BsmFI	GGGAC	2 cut(s)	344, 1102
BsnI	GGCC	2 cut(s)	58, 944
Bsp1286I	GDGCHC	3 cut(s)	38, 250, 918
Bsp143I	GATC	4 cut(s)	371, 550, 629, 1051
Bsp1720I	GCTNAGC	1 cut(s)	828
Bsp68I	TCGCGA	1 cut(s)	45
BspACI	CCGC	3 cut(s)	415, 562, 1032
BspANI	GGCC	2 cut(s)	58, 944
BspCNI	CTCAG	4 cut(s)	38, 685, 814, 820
BspFNI	CGCG	2 cut(s)	45, 1034
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	3 cut(s)	366, 558, 1059
BspTI	CTTAAG	1 cut(s)	946
BsrBI	CCGCTC	1 cut(s)	417
BsrDI	GCAATG	3 cut(s)	103, 381, 603
BsrI	ACTGG	3 cut(s)	140, 797, 846
BssMI	GATC	4 cut(s)	371, 550, 629, 1051
Bst2UI	CCWGG	1 cut(s)	1088
Bst4CI	ACNGT	3 cut(s)	245, 614, 928
Bst6I	CTCTTC	1 cut(s)	423
BstAFI	CTTAAG	1 cut(s)	946
BstBAI	YACGTR	2 cut(s)	324, 509
BstC8I	GCNNGC	1 cut(s)	640
BstDEI	CTNAG	4 cut(s)	25, 693, 822, 828
BstENI	CCTNNNNNAGG	1 cut(s)	259
BstF5I	GGATG	4 cut(s)	251, 439, 463, 874
BstFNI	CGCG	2 cut(s)	45, 1034
BstKTI	GATC	4 cut(s)	374, 553, 632, 1054
BstMAI	GTCTC	3 cut(s)	295, 692, 770
BstMBI	GATC	4 cut(s)	371, 550, 629, 1051
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 93, 512, 571, 1016, 1019, 1028
BstNI	CCWGG	1 cut(s)	1088
BstNSI	RCATGY	2 cut(s)	215, 638
BstSCI	CCNGG	1 cut(s)	1086
BstSLI	GKGCMC	2 cut(s)	38, 250
BstUI	CGCG	2 cut(s)	45, 1034
BstV1I	GCAGC	5 cut(s)	515, 670, 883, 997, 1006
BstX2I	RGATCY	3 cut(s)	371, 550, 1051
BstYI	RGATCY	3 cut(s)	371, 550, 1051
BsuRI	GGCC	2 cut(s)	58, 944
BtgZI	GCGATG	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	4 cut(s)	251, 439, 463, 874
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	663, 964
BtuMI	TCGCGA	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	640
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	5 cut(s)	142, 193, 212, 635, 644
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	4 cut(s)	25, 693, 822, 828
DpnI	GATC	4 cut(s)	373, 552, 631, 1053
DpnII	GATC	4 cut(s)	371, 550, 629, 1051
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	918
Eco32I	GATATC	1 cut(s)	760
Eco57I	CTGAAG	2 cut(s)	530, 971
Eco72I	CACGTG	1 cut(s)	509
EcoNI	CCTNNNNNAGG	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	1086
EcoRV	GATATC	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	918
FaeI	CATG	5 cut(s)	145, 196, 215, 638, 647
FaqI	GGGAC	2 cut(s)	344, 1102
FatI	CATG	5 cut(s)	141, 192, 211, 634, 643
FauNDI	CATATG	2 cut(s)	834, 880
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	7 cut(s)	504, 563, 684, 872, 1011, 1020, 1032
FokI	GGATG	4 cut(s)	238, 446, 470, 861
FriOI	GRGCYC	1 cut(s)	918
Fsp4HI	GCNGC	7 cut(s)	504, 563, 684, 872, 1011, 1020, 1032
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	7 cut(s)	504, 563, 684, 872, 1011, 1020, 1032
GsaI	CCCAGC	1 cut(s)	1123
GsuI	CTGGAG	1 cut(s)	1035
HaeIII	GGCC	2 cut(s)	58, 944
HgaI	GACGC	1 cut(s)	381
Hin1II	CATG	5 cut(s)	145, 196, 215, 638, 647
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	2 cut(s)	85, 949
HinfI	GANTC	2 cut(s)	169, 937
HphI	GGTGA	3 cut(s)	302, 829, 946
Hpy166II	GTNNAC	4 cut(s)	248, 396, 407, 790
Hpy188I	TCNGA	4 cut(s)	28, 694, 972, 1056
Hpy188III	TCNNGA	4 cut(s)	44, 548, 809, 1109
Hpy8I	GTNNAC	4 cut(s)	248, 396, 407, 790
HpyAV	CCTTC	5 cut(s)	23, 348, 554, 956, 1115
HpyCH4III	ACNGT	3 cut(s)	245, 614, 928
HpyCH4IV	ACGT	5 cut(s)	13, 323, 409, 508, 720
HpyCH4V	TGCA	6 cut(s)	248, 348, 503, 596, 686, 871
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 93, 512, 571, 1016, 1019, 1028
HpyF3I	CTNAG	4 cut(s)	25, 693, 822, 828
HpySE526I	ACGT	5 cut(s)	13, 323, 409, 508, 720
Hsp92II	CATG	5 cut(s)	145, 196, 215, 638, 647
Kzo9I	GATC	4 cut(s)	371, 550, 629, 1051
LmnI	GCTCC	2 cut(s)	889, 1016
Lsp1109I	GCAGC	5 cut(s)	515, 670, 883, 997, 1006
LweI	GCATC	3 cut(s)	490, 740, 883
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	5 cut(s)	13, 323, 409, 508, 720
MaeIII	GTNAC	3 cut(s)	14, 410, 817
MalI	GATC	4 cut(s)	373, 552, 631, 1053
MbiI	CCGCTC	1 cut(s)	417
MboI	GATC	4 cut(s)	371, 550, 629, 1051
MboII	GAAGA	2 cut(s)	440, 1129
MflI	RGATCY	3 cut(s)	371, 550, 1051
MhlI	GDGCHC	3 cut(s)	38, 250, 918
MluCI	AATT	8 cut(s)	199, 220, 269, 352, 422, 853, 908, 1045
MroXI	GAANNNNTTC	2 cut(s)	271, 966
MseI	TTAA	1 cut(s)	947
MslI	CAYNNNNRTG	1 cut(s)	879
MspCI	CTTAAG	1 cut(s)	946
MspR9I	CCNGG	1 cut(s)	1088
MvaI	CCWGG	1 cut(s)	1088
MvnI	CGCG	2 cut(s)	45, 1034
MwoI	GCNNNNNNNGC	7 cut(s)	42, 93, 512, 571, 1016, 1019, 1028
NdeI	CATATG	2 cut(s)	834, 880
NdeII	GATC	4 cut(s)	371, 550, 629, 1051
NlaIII	CATG	5 cut(s)	145, 196, 215, 638, 647
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	3 cut(s)	14, 410, 817
NruI	TCGCGA	1 cut(s)	45
NspI	RCATGY	2 cut(s)	215, 638
PdmI	GAANNNNTTC	2 cut(s)	271, 966
PfeI	GAWTC	2 cut(s)	169, 937
PkrI	GCNGC	7 cut(s)	505, 564, 685, 873, 1012, 1021, 1033
PmaCI	CACGTG	1 cut(s)	509
PmlI	CACGTG	1 cut(s)	509
Ppu21I	YACGTR	2 cut(s)	324, 509
Psp6I	CCWGG	1 cut(s)	1086
PspCI	CACGTG	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	1119
PspGI	CCWGG	1 cut(s)	1086
PsuI	RGATCY	3 cut(s)	371, 550, 1051
RruI	TCGCGA	1 cut(s)	45
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	879
SaqAI	TTAA	1 cut(s)	947
SatI	GCNGC	7 cut(s)	504, 563, 684, 872, 1011, 1020, 1032
Sau3AI	GATC	4 cut(s)	371, 550, 629, 1051
ScrFI	CCNGG	1 cut(s)	1088
SduI	GDGCHC	3 cut(s)	38, 250, 918
SfaNI	GCATC	3 cut(s)	490, 740, 883
SmiMI	CAYNNNNRTG	1 cut(s)	879
SmlI	CTYRAG	1 cut(s)	946
SmoI	CTYRAG	1 cut(s)	946
Sse9I	AATT	8 cut(s)	199, 220, 269, 352, 422, 853, 908, 1045
SsiI	CCGC	3 cut(s)	415, 562, 1032
SspI	AATATT	1 cut(s)	1072
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	1086
TaaI	ACNGT	3 cut(s)	245, 614, 928
TaiI	ACGT	5 cut(s)	16, 326, 412, 511, 723
TaqI	TCGA	1 cut(s)	216
TasI	AATT	8 cut(s)	199, 220, 269, 352, 422, 853, 908, 1045
TauI	GCSGC	2 cut(s)	565, 1034
TfiI	GAWTC	2 cut(s)	169, 937
Tru1I	TTAA	1 cut(s)	947
Tru9I	TTAA	1 cut(s)	947
TscAI	CASTG	2 cut(s)	670, 964
TseFI	GTSAC	3 cut(s)	14, 410, 817
TseI	GCWGC	5 cut(s)	503, 683, 871, 1010, 1019
Tsp45I	GTSAC	3 cut(s)	14, 410, 817
TspDTI	ATGAA	2 cut(s)	450, 966
TspRI	CASTG	2 cut(s)	670, 964
Vha464I	CTTAAG	1 cut(s)	946
VneI	GTGCAC	1 cut(s)	246
XagI	CCTNNNNNAGG	1 cut(s)	259
XapI	RAATTY	3 cut(s)	269, 853, 1045
XceI	RCATGY	2 cut(s)	215, 638
XmiI	GTMKAC	1 cut(s)	395
XmnI	GAANNNNTTC	2 cut(s)	271, 966
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.