Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009679

Physical Location & Seq

Genomic Coordinates Forward (+)

23355405 .. 23362107

Gene Structure 6703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007953

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTCATCATGGATGAAGGATCTCTATCGCTGCCGATCAGGACCGATGTCTTTTACACGTCACTTTCGCTCAGAAGGGGGCACTACTCGTGATGAGTATTGGCCGTCATTCAGTAGAAACAACTCCAAAAGCTTCAATAGCAATGCCAGACACAACAACAAGACCAACTACAATAACAACTGGAACATGAGCAGGAACAATAACTTTGTTAGGAATCATTATGATTTTCAGTATTACATGGGAAATTATAGGGAGCATGCCGATAATTCTAATCATTTTAAGCCTGACGGTGCACCATCCTATAAAAGGAGAAAATTTTCAGCTTCTACTTGTGGTGATGGTGGGAGACATTATCTGCCACCAAACACGTATGATTTCGCTCCTTCAACCTGCAACAATTATGTCCCTCCTACAAGATCCAACGGCATTGCCTCTGCATCTACCACCTGCAAACGTGACCGCTCAAAATTAGAAGAGGATGAAGTTGCCTTTATGTCAAGGGATGAGATTGAGAGATACTCCCCATCTAGGAAAGATGGTATAGATGCAGCACGTGAGGCACATTTGCGATATTCATATTGTTCGTACCTTCAGGATCTTGGTTTGCGGCTGGACTTGCCACAGACCACGATTGCTACTGCAATGGTTCTCTGCCACCGTTTTTTTGCTCGGCGATCACATGCTTGCCATGACAGATTTTTGATTGCCACTGCTGTTCTCTTTCTTGCTGCAAAGTCTGAGGAGACACCTCGCCCTTTGAATAATGTAGTGAGGGCATCTTGTGAGATTTTCCATAAGCAGGATATCAGTCTCTTGTCCTATATACTCCCTGTTGACTGGTTTGAGCAGTATCGGGAACGGGTGACTGAGGCTGAGCATATGATACTGGCTACTCTAAATTTTGAACTGAATGTGCAGCATCCATATGCTCCTCTTACCTCGATACTTGATAAATTAGGGCTCTCACAAACTGTTTTGGTGAATCTGGCCTTAAGCTTGGTCAGTGAAGGGCTTCGGAGTTCATTGTGGCTTCAGTTCAAACCGCATCATATTGCTGCTGGAGCTGCCTACCTTGCCGCGAAGTTTCTAAATTTGGATCTGAAACCTTATCAAAATATTTGGCAAGAGTTCCAGGCTACACCAGATGTCCTTCAAGATGTGTCCCAGCAGTTGATGGAACTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

396

Amino Acids

45.65

Weight (kDa)

8.66

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	164 - 304	5.4e-14	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15100 FvH4_4g15100
malus_domestica	MD13G1188600.v1.1 MD16G1189200.v1.1
prunus_persica	Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1
pyrus_communis	pycom13g16300 pycom16g15920
rosa_chinensis	RchiOBHm_Chr4g0416761
rosa_laevigata	RLG00000007953
rosa_multiflora	Rmu_sc0036474.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360640
rosa_rugosa	Rorug04G0144600 Rorug04G0144700 Rorug04G0144800
rosa_samantha	Rh4AG207300 Rh4BG204500 Rh4CG218300 Rh4DG204400
rosa_wichuraiana	Rw4G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	455
Acc36I	ACCTGC	2 cut(s)	398, 455
AccBSI	CCGCTC	1 cut(s)	462
AccII	CGCG	1 cut(s)	1079
AciI	CCGC	4 cut(s)	460, 607, 1043, 1077
AclWI	GGATC	4 cut(s)	27, 411, 603, 1104
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	3 cut(s)	314, 898, 1090
AcuI	CTGAAG	2 cut(s)	575, 1016
AcvI	CACGTG	1 cut(s)	554
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	3 cut(s)	306, 528, 799
AflII	CTTAAG	1 cut(s)	991
AflIII	ACRYGT	2 cut(s)	56, 366
AgsI	TTSAA	6 cut(s)	136, 387, 760, 905, 1039, 1154
AjiI	CACGTC	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	1131
AluBI	AGCT	4 cut(s)	132, 323, 996, 1064
AluI	AGCT	4 cut(s)	132, 323, 996, 1064
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	3 cut(s)	340, 737, 815
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	4 cut(s)	27, 411, 603, 1104
AoxI	GGCC	2 cut(s)	101, 987
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	6 cut(s)	30, 548, 728, 916, 1055, 1064
ApoI	RAATTY	3 cut(s)	314, 898, 1090
Asp700I	GAANNNNTTC	2 cut(s)	316, 1011
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	3 cut(s)	347, 874, 991
AvaII	GGWCC	1 cut(s)	41
BaeGI	GKGCMC	2 cut(s)	83, 295
BanII	GRGCYC	1 cut(s)	963
BauI	CACGAG	1 cut(s)	87
BbrPI	CACGTG	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	6 cut(s)	17, 560, 715, 928, 1042, 1051
BccI	CCATC	5 cut(s)	304, 332, 530, 532, 1168
BceAI	ACGGC	2 cut(s)	88, 439
BciT130I	CCWGG	1 cut(s)	1133
BcoDI	GTCTC	3 cut(s)	340, 737, 815
BfaI	CTAG	1 cut(s)	528
BfrI	CTTAAG	1 cut(s)	991
BfuAI	ACCTGC	2 cut(s)	398, 455
BisI	GCNGC	8 cut(s)	31, 549, 608, 729, 917, 1056, 1065, 1077
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	8 cut(s)	32, 550, 609, 730, 918, 1057, 1066, 1078
Bme1390I	CCNGG	1 cut(s)	1133
Bme18I	GGWCC	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	1133
BmsI	GCATC	5 cut(s)	446, 535, 785, 928, 1054
BoxI	GACNNNNGTC	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	1 cut(s)	1080
Bpu1102I	GCTNAGC	1 cut(s)	873
BsaAI	YACGTR	2 cut(s)	369, 554
BsaBI	GATNNNNATC	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 528, 799
Bse1I	ACTGG	3 cut(s)	185, 842, 891
Bse3DI	GCAATG	3 cut(s)	148, 426, 648
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	1133
BseGI	GGATG	5 cut(s)	18, 296, 484, 508, 919
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	3 cut(s)	306, 528, 799
BseMI	GCAATG	3 cut(s)	148, 426, 648
BseMII	CTCAG	4 cut(s)	84, 729, 858, 864
BseNI	ACTGG	3 cut(s)	185, 842, 891
BseRI	GAGGAG	2 cut(s)	755, 921
BseSI	GKGCMC	2 cut(s)	83, 295
BseXI	GCAGC	6 cut(s)	17, 560, 715, 928, 1042, 1051
BseYI	CCCAGC	1 cut(s)	1164
BsgI	GTGCAG	1 cut(s)	935
Bsh1236I	CGCG	1 cut(s)	1079
BshFI	GGCC	2 cut(s)	103, 989
BsiHKAI	GWGCWC	1 cut(s)	295
BslFI	GGGAC	2 cut(s)	389, 1147
BslI	CCNNNNNNNGG	3 cut(s)	306, 528, 799
BsmAI	GTCTC	3 cut(s)	340, 737, 815
BsmFI	GGGAC	2 cut(s)	389, 1147
BsnI	GGCC	2 cut(s)	103, 989
Bsp1286I	GDGCHC	3 cut(s)	83, 295, 963
Bsp143I	GATC	6 cut(s)	19, 35, 416, 595, 674, 1096
Bsp1720I	GCTNAGC	1 cut(s)	873
BspACI	CCGC	4 cut(s)	460, 607, 1043, 1077
BspANI	GGCC	2 cut(s)	103, 989
BspCNI	CTCAG	4 cut(s)	83, 730, 859, 865
BspFNI	CGCG	1 cut(s)	1079
BspMI	ACCTGC	2 cut(s)	398, 455
BspPI	GGATC	4 cut(s)	27, 411, 603, 1104
BspTI	CTTAAG	1 cut(s)	991
BsrBI	CCGCTC	1 cut(s)	462
BsrDI	GCAATG	3 cut(s)	148, 426, 648
BsrI	ACTGG	3 cut(s)	185, 842, 891
BssMI	GATC	6 cut(s)	19, 35, 416, 595, 674, 1096
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	1133
Bst4CI	ACNGT	3 cut(s)	290, 659, 973
Bst6I	CTCTTC	1 cut(s)	468
BstAFI	CTTAAG	1 cut(s)	991
BstBAI	YACGTR	2 cut(s)	369, 554
BstC8I	GCNNGC	2 cut(s)	258, 685
BstDEI	CTNAG	4 cut(s)	70, 738, 867, 873
BstENI	CCTNNNNNAGG	1 cut(s)	304
BstF5I	GGATG	5 cut(s)	18, 296, 484, 508, 919
BstFNI	CGCG	1 cut(s)	1079
BstKTI	GATC	6 cut(s)	22, 38, 419, 598, 677, 1099
BstMAI	GTCTC	3 cut(s)	340, 737, 815
BstMBI	GATC	6 cut(s)	19, 35, 416, 595, 674, 1096
BstMWI	GCNNNNNNNGC	6 cut(s)	138, 557, 616, 1061, 1064, 1073
BstNI	CCWGG	1 cut(s)	1133
BstNSI	RCATGY	2 cut(s)	260, 683
BstPAI	GACNNNNGTC	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	1131
BstSLI	GKGCMC	2 cut(s)	83, 295
BstUI	CGCG	1 cut(s)	1079
BstV1I	GCAGC	6 cut(s)	17, 560, 715, 928, 1042, 1051
BstX2I	RGATCY	4 cut(s)	19, 416, 595, 1096
BstYI	RGATCY	4 cut(s)	19, 416, 595, 1096
BsuRI	GGCC	2 cut(s)	103, 989
BtrI	CACGTC	1 cut(s)	59
BtsCI	GGATG	5 cut(s)	18, 296, 484, 508, 919
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	2 cut(s)	708, 1009
BveI	ACCTGC	2 cut(s)	398, 455
Cac8I	GCNNGC	2 cut(s)	258, 685
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	6 cut(s)	9, 187, 238, 257, 680, 689
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	4 cut(s)	70, 738, 867, 873
DpnI	GATC	6 cut(s)	21, 37, 418, 597, 676, 1098
DpnII	GATC	6 cut(s)	19, 35, 416, 595, 674, 1096
EaeI	YGGCCR	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	963
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	575, 1016
Eco72I	CACGTG	1 cut(s)	554
EcoNI	CCTNNNNNAGG	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	1131
EcoRV	GATATC	1 cut(s)	805
EcoT38I	GRGCYC	1 cut(s)	963
FaeI	CATG	6 cut(s)	12, 190, 241, 260, 683, 692
FaqI	GGGAC	2 cut(s)	389, 1147
FatI	CATG	6 cut(s)	8, 186, 237, 256, 679, 688
FauNDI	CATATG	2 cut(s)	879, 925
Fnu4HI	GCNGC	8 cut(s)	31, 549, 608, 729, 917, 1056, 1065, 1077
FokI	GGATG	5 cut(s)	25, 283, 491, 515, 906
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	8 cut(s)	31, 549, 608, 729, 917, 1056, 1065, 1077
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	8 cut(s)	31, 549, 608, 729, 917, 1056, 1065, 1077
GsaI	CCCAGC	1 cut(s)	1168
GsuI	CTGGAG	1 cut(s)	1080
HaeIII	GGCC	2 cut(s)	103, 989
Hin1II	CATG	6 cut(s)	12, 190, 241, 260, 683, 692
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HindIII	AAGCTT	2 cut(s)	130, 994
HinfI	GANTC	2 cut(s)	214, 982
HphI	GGTGA	3 cut(s)	347, 874, 991
Hpy166II	GTNNAC	2 cut(s)	293, 835
Hpy188I	TCNGA	4 cut(s)	73, 739, 1017, 1101
Hpy188III	TCNNGA	5 cut(s)	39, 89, 593, 854, 1154
Hpy8I	GTNNAC	2 cut(s)	293, 835
HpyAV	CCTTC	6 cut(s)	10, 68, 393, 599, 1001, 1160
HpyCH4III	ACNGT	3 cut(s)	290, 659, 973
HpyCH4IV	ACGT	4 cut(s)	58, 368, 454, 553
HpyCH4V	TGCA	8 cut(s)	293, 393, 437, 450, 548, 641, 731, 916
HpyF10VI	GCNNNNNNNGC	6 cut(s)	138, 557, 616, 1061, 1064, 1073
HpyF3I	CTNAG	4 cut(s)	70, 738, 867, 873
HpySE526I	ACGT	4 cut(s)	58, 368, 454, 553
Hsp92II	CATG	6 cut(s)	12, 190, 241, 260, 683, 692
Kzo9I	GATC	6 cut(s)	19, 35, 416, 595, 674, 1096
LmnI	GCTCC	4 cut(s)	253, 385, 934, 1061
Lsp1109I	GCAGC	6 cut(s)	17, 560, 715, 928, 1042, 1051
LweI	GCATC	5 cut(s)	446, 535, 785, 928, 1054
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	4 cut(s)	58, 368, 454, 553
MaeIII	GTNAC	3 cut(s)	59, 455, 862
MalI	GATC	6 cut(s)	21, 37, 418, 597, 676, 1098
MbiI	CCGCTC	1 cut(s)	462
MboI	GATC	6 cut(s)	19, 35, 416, 595, 674, 1096
MboII	GAAGA	2 cut(s)	485, 1174
MflI	RGATCY	4 cut(s)	19, 416, 595, 1096
MhlI	GDGCHC	3 cut(s)	83, 295, 963
MluCI	AATT	8 cut(s)	244, 265, 314, 397, 467, 898, 953, 1090
MmeI	TCCRAC	1 cut(s)	444
MroXI	GAANNNNTTC	2 cut(s)	316, 1011
MseI	TTAA	2 cut(s)	279, 992
MslI	CAYNNNNRTG	1 cut(s)	924
MspCI	CTTAAG	1 cut(s)	991
MspR9I	CCNGG	1 cut(s)	1133
MvaI	CCWGG	1 cut(s)	1133
MvnI	CGCG	1 cut(s)	1079
MwoI	GCNNNNNNNGC	6 cut(s)	138, 557, 616, 1061, 1064, 1073
NdeI	CATATG	2 cut(s)	879, 925
NdeII	GATC	6 cut(s)	19, 35, 416, 595, 674, 1096
NlaIII	CATG	6 cut(s)	12, 190, 241, 260, 683, 692
NmeAIII	GCCGAG	1 cut(s)	649
NmuCI	GTSAC	3 cut(s)	59, 455, 862
NspI	RCATGY	2 cut(s)	260, 683
PaeI	GCATGC	1 cut(s)	260
PaqCI	CACCTGC	1 cut(s)	455
PdmI	GAANNNNTTC	2 cut(s)	316, 1011
PfeI	GAWTC	2 cut(s)	214, 982
PkrI	GCNGC	8 cut(s)	32, 550, 609, 730, 918, 1057, 1066, 1078
PmaCI	CACGTG	1 cut(s)	554
PmlI	CACGTG	1 cut(s)	554
Ppu21I	YACGTR	2 cut(s)	369, 554
PshAI	GACNNNNGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	1131
PspCI	CACGTG	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	1164
PspGI	CCWGG	1 cut(s)	1131
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	4 cut(s)	19, 416, 595, 1096
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
RseI	CAYNNNNRTG	1 cut(s)	924
SaqAI	TTAA	2 cut(s)	279, 992
SatI	GCNGC	8 cut(s)	31, 549, 608, 729, 917, 1056, 1065, 1077
Sau3AI	GATC	6 cut(s)	19, 35, 416, 595, 674, 1096
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	1133
SduI	GDGCHC	3 cut(s)	83, 295, 963
SfaNI	GCATC	5 cut(s)	446, 535, 785, 928, 1054
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	1 cut(s)	991
SmoI	CTYRAG	1 cut(s)	991
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	8 cut(s)	244, 265, 314, 397, 467, 898, 953, 1090
SsiI	CCGC	4 cut(s)	460, 607, 1043, 1077
SspI	AATATT	1 cut(s)	1117
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	1131
TaaI	ACNGT	3 cut(s)	290, 659, 973
TaiI	ACGT	4 cut(s)	61, 371, 457, 556
TaqI	TCGA	1 cut(s)	941
TaqII	GACCGA	1 cut(s)	58
TasI	AATT	8 cut(s)	244, 265, 314, 397, 467, 898, 953, 1090
TauI	GCSGC	2 cut(s)	610, 1079
TfiI	GAWTC	2 cut(s)	214, 982
Tru1I	TTAA	2 cut(s)	279, 992
Tru9I	TTAA	2 cut(s)	279, 992
TscAI	CASTG	2 cut(s)	715, 1009
TseFI	GTSAC	3 cut(s)	59, 455, 862
TseI	GCWGC	6 cut(s)	30, 548, 728, 916, 1055, 1064
Tsp45I	GTSAC	3 cut(s)	59, 455, 862
TspDTI	ATGAA	4 cut(s)	29, 495, 564, 1011
TspRI	CASTG	2 cut(s)	715, 1009
Vha464I	CTTAAG	1 cut(s)	991
VneI	GTGCAC	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	304
XapI	RAATTY	3 cut(s)	314, 898, 1090
XceI	RCATGY	2 cut(s)	260, 683
XmnI	GAANNNNTTC	2 cut(s)	316, 1011
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.