Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009679

Physical Location & Seq

Genomic Coordinates Forward (+)

24049519 .. 24051703

Gene Structure 2185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0144600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAAGGATTCGAAGAATGGAAGAAACGGGCAGAGCAATGGTTATCTCAAGCATTGAAACAGGCAGATCCATTATGGTTTCAAGCACATGAGTACATTCAGCAGGTTCCGCCTACTCAGATCTGTGCTGCTCTTGCCATCTTGCTAGTAACCTCAGTTTTACTCTTATTAGGTAGGTTGTTTAAACGCCAAAAAGCTAATACCATATTGCTGAGTGGGCTTAGCGGGAGTGGAAAGACTGTTCTTTTCTATCAACTATGGGATGGGTCTGCTCACCAAGGTACTGTGACATCAATGGAACCAAATGAGGGAACTTTTGTGCTCAATTCTGAAAAATCAAAGAATGGAAAGTTAAAGCCTGTACATCTTGTTGATGTTCCTGGACATTCTCGTCTCAGACCCAAACTAGATGAGTTCCTGCCCCAAGCAGCTGGTATAGTTTTTGTGGTGGATGCTTTGGAATTCTTACCAAACTTGCGTGCCGCTTCAGAGTACCTGTACGATCTTTTGACCAAGGCAAGTGTGGTGAAGAAGAAAATTCCCATTCTTATTCTCTGCAACAAGACAGACAAAGTAACAGCACATAGCAAGGAGTTCATTCGAAAACAATTGGAGAAGGAAATTGACAAATTACGGGCATCAAGAAGTGCAATATCGACAGCTGATATTGCAAATGACATTACTCTTGGGGTACTTGGCGAACCATTTTCATTCACTCAGTGTCAGAACAAAGTTACAGTTGCAGAAGCTGCGGGTATTATAGGCGATATAGCTGAGGTGGAACAGTTCATCAGGGACCATGTAAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

270

Amino Acids

29.99

Weight (kDa)

8.64

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	56 - 217	1.6e-17	ADP-ribosylation factor family
SRPRB	PF09439	65 - 245	5.9e-35	Signal recognition particle receptor beta subunit
Gtr1_RagA	PF04670	69 - 211	1.7e-07	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15100 FvH4_4g15100
malus_domestica	MD13G1188600.v1.1 MD16G1189200.v1.1
prunus_persica	Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1
pyrus_communis	pycom13g16300 pycom16g15920
rosa_chinensis	RchiOBHm_Chr4g0416761
rosa_laevigata	RLG00000007953
rosa_multiflora	Rmu_sc0036474.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360640
rosa_rugosa	Rorug04G0144600 Rorug04G0144700 Rorug04G0144800
rosa_samantha	Rh4AG207300 Rh4BG204500 Rh4CG218300 Rh4DG204400
rosa_wichuraiana	Rw4G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	94
AciI	CCGC	4 cut(s)	110, 225, 483, 752
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	461, 537
AcuI	CTGAAG	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	720
AfaI	GTAC	6 cut(s)	95, 283, 363, 494, 500, 693
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	58, 83
AjnI	CCWGG	1 cut(s)	379
AloI	GAACNNNNNNTCC	2 cut(s)	225, 257
AluBI	AGCT	5 cut(s)	197, 431, 662, 749, 773
AluI	AGCT	5 cut(s)	197, 431, 662, 749, 773
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	62
AlwNI	CAGNNNCTG	1 cut(s)	749
ApeKI	GCWGC	3 cut(s)	128, 428, 749
ApoI	RAATTY	2 cut(s)	461, 537
AspS9I	GGNCC	1 cut(s)	796
AsuHPI	GGTGA	2 cut(s)	266, 538
AsuII	TTCGAA	2 cut(s)	12, 601
AvaII	GGWCC	1 cut(s)	796
Bbv12I	GWGCWC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	3 cut(s)	115, 440, 736
BccI	CCATC	2 cut(s)	146, 257
BciT130I	CCWGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	146, 407
BfuAI	ACCTGC	1 cut(s)	94
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	4 cut(s)	129, 429, 483, 750
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	4 cut(s)	130, 430, 484, 751
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	796
BmiI	GGNNCC	3 cut(s)	108, 300, 797
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	442, 647
Bpu10I	CCTNAGC	1 cut(s)	774
Bpu1102I	GCTNAGC	1 cut(s)	221
Bpu14I	TTCGAA	2 cut(s)	12, 601
BpuEI	CTTGAG	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	277, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	277, 513
BseGI	GGATG	2 cut(s)	268, 457
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	6 cut(s)	131, 168, 203, 409, 731, 765
BseXI	GCAGC	3 cut(s)	115, 440, 736
BsiHKAI	GWGCWC	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	398
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	809
Bsp119I	TTCGAA	2 cut(s)	12, 601
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	67, 120, 502
Bsp1720I	GCTNAGC	1 cut(s)	221
BspACI	CCGC	4 cut(s)	110, 225, 483, 752
BspCNI	CTCAG	6 cut(s)	130, 167, 204, 408, 730, 766
BspLI	GGNNCC	3 cut(s)	108, 300, 797
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	62
BspT104I	TTCGAA	2 cut(s)	12, 601
BsrDI	GCAATG	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	277, 513
BssMI	GATC	3 cut(s)	67, 120, 502
BssT1I	CCWWGG	2 cut(s)	277, 513
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	4 cut(s)	241, 286, 739, 786
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstAUI	TGTACA	1 cut(s)	361
BstBI	TTCGAA	2 cut(s)	12, 601
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	8 cut(s)	117, 154, 212, 221, 395, 717, 774, 810
BstF5I	GGATG	2 cut(s)	268, 457
BstKTI	GATC	3 cut(s)	70, 123, 505
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	3 cut(s)	67, 120, 502
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 134, 217, 668, 749
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstV1I	GCAGC	3 cut(s)	115, 440, 736
BstX2I	RGATCY	2 cut(s)	67, 120
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	2 cut(s)	67, 120
BtsCI	GGATG	2 cut(s)	268, 457
BtsIMutI	CAGTG	1 cut(s)	725
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	480
CaiI	CAGNNNCTG	1 cut(s)	749
Cfr13I	GGNCC	1 cut(s)	796
Csp6I	GTAC	6 cut(s)	94, 282, 362, 493, 499, 692
CviAII	CATG	2 cut(s)	89, 800
CviJI	RGCY	7 cut(s)	197, 220, 358, 431, 662, 749, 773
CviKI_1	RGCY	7 cut(s)	197, 220, 358, 431, 662, 749, 773
CviQI	GTAC	6 cut(s)	94, 282, 362, 493, 499, 692
DdeI	CTNAG	8 cut(s)	117, 154, 212, 221, 395, 717, 774, 810
DpnI	GATC	3 cut(s)	69, 122, 504
DpnII	GATC	3 cut(s)	67, 120, 502
DraI	TTTAAA	1 cut(s)	184
DraIII	CACNNNGTG	1 cut(s)	720
DrdI	GACNNNNNNGTC	1 cut(s)	390
DseDI	GACNNNNNNGTC	1 cut(s)	390
EciI	GGCGGA	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	277, 513
Eco47I	GGWCC	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	471
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	277, 513
ErhI	CCWWGG	2 cut(s)	277, 513
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	2 cut(s)	92, 803
FaiI	YATR	9 cut(s)	76, 90, 206, 259, 437, 585, 761, 770, 801
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	2 cut(s)	88, 799
FauI	CCCGC	2 cut(s)	218, 745
Fnu4HI	GCNGC	4 cut(s)	129, 429, 483, 750
FokI	GGATG	2 cut(s)	275, 464
Fsp4HI	GCNGC	4 cut(s)	129, 429, 483, 750
FspBI	CTAG	2 cut(s)	146, 407
GluI	GCNGC	4 cut(s)	129, 429, 483, 750
Hin1II	CATG	2 cut(s)	92, 803
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	2 cut(s)	266, 538
Hpy188I	TCNGA	5 cut(s)	120, 331, 398, 490, 726
Hpy188III	TCNNGA	1 cut(s)	642
HpyAV	CCTTC	1 cut(s)	610
HpyCH4III	ACNGT	4 cut(s)	241, 286, 739, 786
HpyCH4V	TGCA	4 cut(s)	558, 650, 671, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 134, 217, 668, 749
HpyF3I	CTNAG	8 cut(s)	117, 154, 212, 221, 395, 717, 774, 810
Hsp92II	CATG	2 cut(s)	92, 803
Kzo9I	GATC	3 cut(s)	67, 120, 502
LpnPI	CCDG	9 cut(s)	47, 89, 366, 372, 393, 417, 431, 509, 778
Lsp1109I	GCAGC	3 cut(s)	115, 440, 736
LweI	GCATC	2 cut(s)	442, 647
MaeI	CTAG	2 cut(s)	146, 407
MaeIII	GTNAC	4 cut(s)	148, 286, 574, 733
MalI	GATC	3 cut(s)	69, 122, 504
MboI	GATC	3 cut(s)	67, 120, 502
MboII	GAAGA	4 cut(s)	26, 34, 541, 544
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	2 cut(s)	67, 120
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	6 cut(s)	325, 461, 537, 608, 621, 629
MnlI	CCTC	3 cut(s)	163, 301, 769
MseI	TTAA	2 cut(s)	183, 353
MspA1I	CMGCKG	2 cut(s)	431, 662
MspR9I	CCNGG	1 cut(s)	381
MssI	GTTTAAAC	1 cut(s)	184
MunI	CAATTG	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	5 cut(s)	109, 134, 217, 668, 749
NdeII	GATC	3 cut(s)	67, 120, 502
NlaIII	CATG	2 cut(s)	92, 803
NlaIV	GGNNCC	3 cut(s)	108, 300, 797
NmuCI	GTSAC	1 cut(s)	286
NspV	TTCGAA	2 cut(s)	12, 601
PfeI	GAWTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	4 cut(s)	130, 430, 484, 751
PmeI	GTTTAAAC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	3 cut(s)	108, 300, 797
PspPI	GGNCC	1 cut(s)	796
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	2 cut(s)	67, 120
PvuII	CAGCTG	2 cut(s)	431, 662
RsaI	GTAC	6 cut(s)	95, 283, 363, 494, 500, 693
RsaNI	GTAC	6 cut(s)	94, 282, 362, 493, 499, 692
SaqAI	TTAA	2 cut(s)	183, 353
SatI	GCNGC	4 cut(s)	129, 429, 483, 750
Sau3AI	GATC	3 cut(s)	67, 120, 502
Sau96I	GGNCC	1 cut(s)	796
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	324
SfaNI	GCATC	2 cut(s)	442, 647
SfuI	TTCGAA	2 cut(s)	12, 601
SinI	GGWCC	1 cut(s)	796
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	6 cut(s)	325, 461, 537, 608, 621, 629
SsiI	CCGC	4 cut(s)	110, 225, 483, 752
SspMI	CTAG	2 cut(s)	146, 407
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	2 cut(s)	277, 513
TaaI	ACNGT	4 cut(s)	241, 286, 739, 786
TaqI	TCGA	3 cut(s)	12, 601, 656
TasI	AATT	6 cut(s)	325, 461, 537, 608, 621, 629
TatI	WGTACW	2 cut(s)	93, 361
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	183, 353
Tru9I	TTAA	2 cut(s)	183, 353
TscAI	CASTG	1 cut(s)	725
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	3 cut(s)	128, 428, 749
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	586, 699, 778
TspRI	CASTG	1 cut(s)	725
VpaK11BI	GGWCC	1 cut(s)	796
XapI	RAATTY	2 cut(s)	461, 537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XspI	CTAG	2 cut(s)	146, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.