Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009679

Physical Location & Seq

Genomic Coordinates Reverse (-)

35186483 .. 35193878

Gene Structure 7396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG204500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTCTTTTACACGTCACTTCCGCTCAGAAGGGGGCACTACTCGCGATGAGTATTGGCCGTCATTCAGTAGAAGCAACTCCAAAAGCTTCAATAGCAATGCCAGACACAACAACAAGACCAACTACAATAATAACTGGAACATGAGCAGGAACAATAACTTTGTTAGGAATCATTACGATTTTCAGTATTACATGGGAAATTATAGAGAGCATGCCGATAATTCTAATCATTTCAAGCCAGACGGTGCACCATCCTATAAAAGGAGAAAATTTTCAGCTTCTACTTGGGGTGATGGTGGTAGACATTATCTGCCACCAAACACGTATGATTTCGCTCCTTCAACCTGCAATAATTATGTCCCTCCTACAAGATCCAACGGCATTGCCTCTGCATCTACCACCTGTAAACGTGACCGCTCAAAATTAGAAGAGGATGAAGTTGCCTTTATGTCAAGGGATGAGATTGAGAGATACTCCCCATCTAGGAAAGATGGTATAGATGCAGCACGTGAGGCACATTTGCGATACTCATATTGTTCGTACCTTCAGGATCTTGGTTTGCGGCTGGACTTGCCACAGACCACGATTGCTACTGCAATGGTTCTCTGCCACCGTTTTTTTGCTCGGCGATCACATGCTTGCCATGACAGATTTTTGATTGCCACTGCTGTTCTCTTTCTTGCTGCAAAGTCTGAGGAGACACCTCGCCCTTTGAATAACGTAGTGAGGGCATCTTGTGAGATTTTCCATAAGCAGGATATCAGTCTCTTGTCCTATATACTCCCTGTTGACTGGTTTGAGCAGTATCGGGAACGGGTGACTGAGGCTGAGCATATGATACTGGCTACTCTAAATTTTGAACTGAATGTGCAGCATCCATATGCTCCTCTTACCTCGATACTCGATAAATTAGGGCTCTCACAAACTGTTTTGGTGAATCTGGCATTAAGCTTGGTCAGTGAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

322

Amino Acids

37.18

Weight (kDa)

8.65

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	148 - 289	3.6e-14	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15100 FvH4_4g15100
malus_domestica	MD13G1188600.v1.1 MD16G1189200.v1.1
prunus_persica	Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1
pyrus_communis	pycom13g16300 pycom16g15920
rosa_chinensis	RchiOBHm_Chr4g0416761
rosa_laevigata	RLG00000007953
rosa_multiflora	Rmu_sc0036474.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360640
rosa_rugosa	Rorug04G0144600 Rorug04G0144700 Rorug04G0144800
rosa_samantha	Rh4AG207300 Rh4BG204500 Rh4CG218300 Rh4DG204400
rosa_wichuraiana	Rw4G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	353
AccBSI	CCGCTC	2 cut(s)	24, 417
AccI	GTMKAC	1 cut(s)	301
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	22, 415, 562
AclWI	GGATC	2 cut(s)	366, 558
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	2 cut(s)	269, 853
AcuI	CTGAAG	1 cut(s)	530
AcvI	CACGTG	1 cut(s)	509
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	261, 483, 754
AflIII	ACRYGT	2 cut(s)	11, 321
AgsI	TTSAA	5 cut(s)	91, 235, 342, 715, 860
AjiI	CACGTC	1 cut(s)	14
AluBI	AGCT	3 cut(s)	87, 278, 951
AluI	AGCT	3 cut(s)	87, 278, 951
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	2 cut(s)	692, 770
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	366, 558
AoxI	GGCC	1 cut(s)	56
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	503, 683, 871
ApoI	RAATTY	2 cut(s)	269, 853
Asp700I	GAANNNNTTC	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	302, 829, 946
BaeGI	GKGCMC	2 cut(s)	38, 250
BanII	GRGCYC	1 cut(s)	918
BbrPI	CACGTG	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	515, 670, 883
BccI	CCATC	4 cut(s)	259, 287, 485, 487
BceAI	ACGGC	2 cut(s)	43, 394
BcoDI	GTCTC	2 cut(s)	692, 770
BfaI	CTAG	1 cut(s)	483
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	4 cut(s)	504, 563, 684, 872
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	4 cut(s)	505, 564, 685, 873
BmgBI	CACGTC	1 cut(s)	14
BmsI	GCATC	4 cut(s)	401, 490, 740, 883
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
Bpu1102I	GCTNAGC	1 cut(s)	828
BsaAI	YACGTR	2 cut(s)	324, 509
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 483, 754
Bse1I	ACTGG	3 cut(s)	140, 797, 846
Bse3DI	GCAATG	3 cut(s)	103, 381, 603
BseGI	GGATG	4 cut(s)	251, 439, 463, 874
BseLI	CCNNNNNNNGG	3 cut(s)	261, 483, 754
BseMI	GCAATG	3 cut(s)	103, 381, 603
BseMII	CTCAG	4 cut(s)	39, 684, 813, 819
BseNI	ACTGG	3 cut(s)	140, 797, 846
BseRI	GAGGAG	2 cut(s)	710, 876
BseSI	GKGCMC	2 cut(s)	38, 250
BseXI	GCAGC	3 cut(s)	515, 670, 883
BsgI	GTGCAG	1 cut(s)	890
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	3 cut(s)	261, 483, 754
BsmAI	GTCTC	2 cut(s)	692, 770
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	58
Bsp1286I	GDGCHC	3 cut(s)	38, 250, 918
Bsp143I	GATC	3 cut(s)	371, 550, 629
Bsp1720I	GCTNAGC	1 cut(s)	828
Bsp68I	TCGCGA	1 cut(s)	45
BspACI	CCGC	3 cut(s)	22, 415, 562
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	4 cut(s)	38, 685, 814, 820
BspFNI	CGCG	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	366, 558
BsrBI	CCGCTC	2 cut(s)	24, 417
BsrDI	GCAATG	3 cut(s)	103, 381, 603
BsrI	ACTGG	3 cut(s)	140, 797, 846
BssMI	GATC	3 cut(s)	371, 550, 629
Bst4CI	ACNGT	3 cut(s)	245, 614, 928
Bst6I	CTCTTC	1 cut(s)	423
BstBAI	YACGTR	2 cut(s)	324, 509
BstC8I	GCNNGC	2 cut(s)	213, 640
BstDEI	CTNAG	4 cut(s)	25, 693, 822, 828
BstENI	CCTNNNNNAGG	1 cut(s)	259
BstF5I	GGATG	4 cut(s)	251, 439, 463, 874
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	374, 553, 632
BstMAI	GTCTC	2 cut(s)	692, 770
BstMBI	GATC	3 cut(s)	371, 550, 629
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 93, 512, 571
BstNSI	RCATGY	2 cut(s)	215, 638
BstSLI	GKGCMC	2 cut(s)	38, 250
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	515, 670, 883
BstX2I	RGATCY	2 cut(s)	371, 550
BstYI	RGATCY	2 cut(s)	371, 550
BsuRI	GGCC	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	4 cut(s)	251, 439, 463, 874
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	2 cut(s)	663, 964
BtuMI	TCGCGA	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	213, 640
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	5 cut(s)	142, 193, 212, 635, 644
CviJI	RGCY	9 cut(s)	58, 87, 238, 278, 565, 827, 845, 916, 951
CviKI_1	RGCY	9 cut(s)	58, 87, 238, 278, 565, 827, 845, 916, 951
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	4 cut(s)	25, 693, 822, 828
DpnI	GATC	3 cut(s)	373, 552, 631
DpnII	GATC	3 cut(s)	371, 550, 629
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	918
Eco32I	GATATC	1 cut(s)	760
Eco57I	CTGAAG	1 cut(s)	530
Eco72I	CACGTG	1 cut(s)	509
EcoNI	CCTNNNNNAGG	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	918
FaeI	CATG	5 cut(s)	145, 196, 215, 638, 647
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	5 cut(s)	141, 192, 211, 634, 643
FauNDI	CATATG	2 cut(s)	834, 880
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	504, 563, 684, 872
FokI	GGATG	4 cut(s)	238, 446, 470, 861
FriOI	GRGCYC	1 cut(s)	918
Fsp4HI	GCNGC	4 cut(s)	504, 563, 684, 872
FspBI	CTAG	1 cut(s)	483
GluI	GCNGC	4 cut(s)	504, 563, 684, 872
HaeIII	GGCC	1 cut(s)	58
Hin1II	CATG	5 cut(s)	145, 196, 215, 638, 647
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	2 cut(s)	85, 949
HinfI	GANTC	2 cut(s)	169, 937
HphI	GGTGA	3 cut(s)	302, 829, 946
Hpy166II	GTNNAC	4 cut(s)	248, 302, 407, 790
Hpy188I	TCNGA	2 cut(s)	28, 694
Hpy188III	TCNNGA	3 cut(s)	44, 548, 809
Hpy8I	GTNNAC	4 cut(s)	248, 302, 407, 790
HpyAV	CCTTC	4 cut(s)	23, 348, 554, 956
HpyCH4III	ACNGT	3 cut(s)	245, 614, 928
HpyCH4IV	ACGT	5 cut(s)	13, 323, 409, 508, 720
HpyCH4V	TGCA	7 cut(s)	248, 348, 392, 503, 596, 686, 871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 93, 512, 571
HpyF3I	CTNAG	4 cut(s)	25, 693, 822, 828
HpySE526I	ACGT	5 cut(s)	13, 323, 409, 508, 720
Hsp92II	CATG	5 cut(s)	145, 196, 215, 638, 647
Kzo9I	GATC	3 cut(s)	371, 550, 629
LmnI	GCTCC	2 cut(s)	340, 889
Lsp1109I	GCAGC	3 cut(s)	515, 670, 883
LweI	GCATC	4 cut(s)	401, 490, 740, 883
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	5 cut(s)	13, 323, 409, 508, 720
MaeIII	GTNAC	3 cut(s)	14, 410, 817
MalI	GATC	3 cut(s)	373, 552, 631
MbiI	CCGCTC	2 cut(s)	24, 417
MboI	GATC	3 cut(s)	371, 550, 629
MboII	GAAGA	1 cut(s)	440
MflI	RGATCY	2 cut(s)	371, 550
MhlI	GDGCHC	3 cut(s)	38, 250, 918
MluCI	AATT	7 cut(s)	199, 220, 269, 352, 422, 853, 908
MmeI	TCCRAC	1 cut(s)	399
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	1 cut(s)	947
MslI	CAYNNNNRTG	1 cut(s)	879
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	42, 93, 512, 571
NdeI	CATATG	2 cut(s)	834, 880
NdeII	GATC	3 cut(s)	371, 550, 629
NlaIII	CATG	5 cut(s)	145, 196, 215, 638, 647
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	3 cut(s)	14, 410, 817
NruI	TCGCGA	1 cut(s)	45
NspI	RCATGY	2 cut(s)	215, 638
PaeI	GCATGC	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	169, 937
PkrI	GCNGC	4 cut(s)	505, 564, 685, 873
PmaCI	CACGTG	1 cut(s)	509
PmlI	CACGTG	1 cut(s)	509
Ppu21I	YACGTR	2 cut(s)	324, 509
PspCI	CACGTG	1 cut(s)	509
PsuI	RGATCY	2 cut(s)	371, 550
RruI	TCGCGA	1 cut(s)	45
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	879
SaqAI	TTAA	1 cut(s)	947
SatI	GCNGC	4 cut(s)	504, 563, 684, 872
Sau3AI	GATC	3 cut(s)	371, 550, 629
SduI	GDGCHC	3 cut(s)	38, 250, 918
SfaNI	GCATC	4 cut(s)	401, 490, 740, 883
SmiMI	CAYNNNNRTG	1 cut(s)	879
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	7 cut(s)	199, 220, 269, 352, 422, 853, 908
SsiI	CCGC	3 cut(s)	22, 415, 562
SspMI	CTAG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	245, 614, 928
TaiI	ACGT	5 cut(s)	16, 326, 412, 511, 723
TaqI	TCGA	2 cut(s)	896, 903
TasI	AATT	7 cut(s)	199, 220, 269, 352, 422, 853, 908
TauI	GCSGC	1 cut(s)	565
TfiI	GAWTC	2 cut(s)	169, 937
Tru1I	TTAA	1 cut(s)	947
Tru9I	TTAA	1 cut(s)	947
TscAI	CASTG	2 cut(s)	670, 964
TseFI	GTSAC	3 cut(s)	14, 410, 817
TseI	GCWGC	3 cut(s)	503, 683, 871
Tsp45I	GTSAC	3 cut(s)	14, 410, 817
TspDTI	ATGAA	1 cut(s)	450
TspRI	CASTG	2 cut(s)	670, 964
VneI	GTGCAC	1 cut(s)	246
XagI	CCTNNNNNAGG	1 cut(s)	259
XapI	RAATTY	2 cut(s)	269, 853
XceI	RCATGY	2 cut(s)	215, 638
XmiI	GTMKAC	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	271
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.