Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009679

Physical Location & Seq

Genomic Coordinates Reverse (-)

45055508 .. 45062564

Gene Structure 7057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG218300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCTTTTACACGTCACTTCCGCTCAGAAGGGGGCACTACTCGTGATGAGTATTGGCCGTCATTCAGTAGAAACAACTCCAAAAGCTTCAATAGCAATGCCAGACACAACAACAAGACCAACTATAACAACTGGAACATGAGCAGGAACAATAACTTTGTTAGGAATCATTACGATTTTCAGTATTACATGGGAAATTATAGAGAGCATGCCAATAATTCTAATCATTTCAAGCCTGACGGTGCACCATCCTATAAAAGGAGAAAATTTTCAGCTTCTACTTGGGGTGATGGTGGGAGACATTATCTGCCACCAAACACGTATGATTTCGCTCCTTCAACCTGCAATAATTATGTCCCTCCTACAAGATCCAACGGCATTGCCTCTGCATCTACCACCTGTAAACGTGACCGCTCAAAATTAGAAGAGGATGAAGTTGCCTTTATGTCAAGGGATGAGATTGAGAGATACTCCCCATCTAGGAAAGATGGTATAGATGCAGCACGTGAGGCACATTTGCGATACTCATATTGTTCGTACCTTCAGGATCTTGGTTTGCGGCTGGACTTGCCACAGACCACGATTGCTACTGCAATGGTTCTCTGCCACCGTTTTTTTGCTCGGCGATCACATGCTTGCCATGACAGATTTTTGATTGCTACTGCTGTTCTCTTTCTTGCTGCAAAGTCTGAGGAGACACCTCGCCCTTTGAATAACGTAGTGAGGGCATCTTGTGAGATTTTCCATAAGCAGGATATCAGTCTCTTGTCCTATATACTCCCTGTTGACTGGTTTGAGCAGTATCGGGAACGGGTGACTGAGGCTGAGCATATGATACTGGCTACTCTAAATTTTGAACTGAATGTGCAGCATCCATATGCTCCTCTTACCTCGATACTTGATAAATTAGGGCTGTCACAAACTGTTTTGGTGAATCTGGCCTTAAGCTTGGTCAGTGAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

321

Amino Acids

37.1

Weight (kDa)

8.81

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	147 - 288	3.6e-14	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15100 FvH4_4g15100
malus_domestica	MD13G1188600.v1.1 MD16G1189200.v1.1
prunus_persica	Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1
pyrus_communis	pycom13g16300 pycom16g15920
rosa_chinensis	RchiOBHm_Chr4g0416761
rosa_laevigata	RLG00000007953
rosa_multiflora	Rmu_sc0036474.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360640
rosa_rugosa	Rorug04G0144600 Rorug04G0144700 Rorug04G0144800
rosa_samantha	Rh4AG207300 Rh4BG204500 Rh4CG218300 Rh4DG204400
rosa_wichuraiana	Rw4G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	350
AccBSI	CCGCTC	2 cut(s)	24, 414
AciI	CCGC	3 cut(s)	22, 412, 559
AclWI	GGATC	2 cut(s)	363, 555
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	2 cut(s)	266, 850
AcuI	CTGAAG	1 cut(s)	527
AcvI	CACGTG	1 cut(s)	506
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	3 cut(s)	258, 480, 751
AflII	CTTAAG	1 cut(s)	943
AflIII	ACRYGT	2 cut(s)	11, 318
AgsI	TTSAA	5 cut(s)	91, 232, 339, 712, 857
AjiI	CACGTC	1 cut(s)	14
AluBI	AGCT	3 cut(s)	87, 275, 948
AluI	AGCT	3 cut(s)	87, 275, 948
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	3 cut(s)	292, 689, 767
Alw44I	GTGCAC	1 cut(s)	243
AlwI	GGATC	2 cut(s)	363, 555
AoxI	GGCC	2 cut(s)	56, 939
ApaLI	GTGCAC	1 cut(s)	243
ApeKI	GCWGC	3 cut(s)	500, 680, 868
ApoI	RAATTY	2 cut(s)	266, 850
Asp700I	GAANNNNTTC	1 cut(s)	268
AsuHPI	GGTGA	3 cut(s)	299, 826, 943
BaeGI	GKGCMC	2 cut(s)	38, 247
BauI	CACGAG	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	512, 667, 880
BccI	CCATC	4 cut(s)	256, 284, 482, 484
BceAI	ACGGC	2 cut(s)	43, 391
BcoDI	GTCTC	3 cut(s)	292, 689, 767
BfaI	CTAG	1 cut(s)	480
BfrI	CTTAAG	1 cut(s)	943
BfuAI	ACCTGC	1 cut(s)	350
BisI	GCNGC	4 cut(s)	501, 560, 681, 869
BlpI	GCTNAGC	1 cut(s)	825
BlsI	GCNGC	4 cut(s)	502, 561, 682, 870
BmgBI	CACGTC	1 cut(s)	14
BmsI	GCATC	4 cut(s)	398, 487, 737, 880
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
Bpu1102I	GCTNAGC	1 cut(s)	825
BsaAI	YACGTR	2 cut(s)	321, 506
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 480, 751
Bse1I	ACTGG	3 cut(s)	137, 794, 843
Bse3DI	GCAATG	3 cut(s)	103, 378, 600
BseGI	GGATG	4 cut(s)	248, 436, 460, 871
BseLI	CCNNNNNNNGG	3 cut(s)	258, 480, 751
BseMI	GCAATG	3 cut(s)	103, 378, 600
BseMII	CTCAG	4 cut(s)	39, 681, 810, 816
BseNI	ACTGG	3 cut(s)	137, 794, 843
BseRI	GAGGAG	2 cut(s)	707, 873
BseSI	GKGCMC	2 cut(s)	38, 247
BseXI	GCAGC	3 cut(s)	512, 667, 880
BsgI	GTGCAG	1 cut(s)	887
BshFI	GGCC	2 cut(s)	58, 941
BsiHKAI	GWGCWC	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	3 cut(s)	258, 480, 751
BsmAI	GTCTC	3 cut(s)	292, 689, 767
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	58, 941
Bsp1286I	GDGCHC	2 cut(s)	38, 247
Bsp143I	GATC	3 cut(s)	368, 547, 626
Bsp1720I	GCTNAGC	1 cut(s)	825
BspACI	CCGC	3 cut(s)	22, 412, 559
BspANI	GGCC	2 cut(s)	58, 941
BspCNI	CTCAG	4 cut(s)	38, 682, 811, 817
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	363, 555
BspTI	CTTAAG	1 cut(s)	943
BsrBI	CCGCTC	2 cut(s)	24, 414
BsrDI	GCAATG	3 cut(s)	103, 378, 600
BsrI	ACTGG	3 cut(s)	137, 794, 843
BssMI	GATC	3 cut(s)	368, 547, 626
BssSI	CACGAG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	242, 611, 925
Bst6I	CTCTTC	1 cut(s)	420
BstAFI	CTTAAG	1 cut(s)	943
BstBAI	YACGTR	2 cut(s)	321, 506
BstC8I	GCNNGC	2 cut(s)	210, 637
BstDEI	CTNAG	4 cut(s)	25, 690, 819, 825
BstENI	CCTNNNNNAGG	1 cut(s)	256
BstF5I	GGATG	4 cut(s)	248, 436, 460, 871
BstKTI	GATC	3 cut(s)	371, 550, 629
BstMAI	GTCTC	3 cut(s)	292, 689, 767
BstMBI	GATC	3 cut(s)	368, 547, 626
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 509, 568
BstNSI	RCATGY	2 cut(s)	212, 635
BstSLI	GKGCMC	2 cut(s)	38, 247
BstV1I	GCAGC	3 cut(s)	512, 667, 880
BstX2I	RGATCY	2 cut(s)	368, 547
BstYI	RGATCY	2 cut(s)	368, 547
BsuRI	GGCC	2 cut(s)	58, 941
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	4 cut(s)	248, 436, 460, 871
BtsIMutI	CAGTG	1 cut(s)	961
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	210, 637
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	5 cut(s)	139, 190, 209, 632, 641
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	4 cut(s)	25, 690, 819, 825
DpnI	GATC	3 cut(s)	370, 549, 628
DpnII	GATC	3 cut(s)	368, 547, 626
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	527
Eco72I	CACGTG	1 cut(s)	506
EcoNI	CCTNNNNNAGG	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	757
FaeI	CATG	5 cut(s)	142, 193, 212, 635, 644
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	5 cut(s)	138, 189, 208, 631, 640
FauNDI	CATATG	2 cut(s)	831, 877
Fnu4HI	GCNGC	4 cut(s)	501, 560, 681, 869
FokI	GGATG	4 cut(s)	235, 443, 467, 858
Fsp4HI	GCNGC	4 cut(s)	501, 560, 681, 869
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	4 cut(s)	501, 560, 681, 869
HaeIII	GGCC	2 cut(s)	58, 941
Hin1II	CATG	5 cut(s)	142, 193, 212, 635, 644
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HindIII	AAGCTT	2 cut(s)	85, 946
HinfI	GANTC	2 cut(s)	166, 934
HphI	GGTGA	3 cut(s)	299, 826, 943
Hpy166II	GTNNAC	3 cut(s)	245, 404, 787
Hpy188I	TCNGA	2 cut(s)	28, 691
Hpy188III	TCNNGA	3 cut(s)	44, 545, 806
Hpy8I	GTNNAC	3 cut(s)	245, 404, 787
HpyAV	CCTTC	4 cut(s)	23, 345, 551, 953
HpyCH4III	ACNGT	3 cut(s)	242, 611, 925
HpyCH4IV	ACGT	5 cut(s)	13, 320, 406, 505, 717
HpyCH4V	TGCA	7 cut(s)	245, 345, 389, 500, 593, 683, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 509, 568
HpyF3I	CTNAG	4 cut(s)	25, 690, 819, 825
HpySE526I	ACGT	5 cut(s)	13, 320, 406, 505, 717
Hsp92II	CATG	5 cut(s)	142, 193, 212, 635, 644
Kzo9I	GATC	3 cut(s)	368, 547, 626
LmnI	GCTCC	2 cut(s)	337, 886
Lsp1109I	GCAGC	3 cut(s)	512, 667, 880
LweI	GCATC	4 cut(s)	398, 487, 737, 880
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	5 cut(s)	13, 320, 406, 505, 717
MaeIII	GTNAC	4 cut(s)	14, 407, 814, 915
MalI	GATC	3 cut(s)	370, 549, 628
MbiI	CCGCTC	2 cut(s)	24, 414
MboI	GATC	3 cut(s)	368, 547, 626
MboII	GAAGA	1 cut(s)	437
MflI	RGATCY	2 cut(s)	368, 547
MhlI	GDGCHC	2 cut(s)	38, 247
MluCI	AATT	7 cut(s)	196, 217, 266, 349, 419, 850, 905
MmeI	TCCRAC	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	1 cut(s)	944
MslI	CAYNNNNRTG	1 cut(s)	876
MspCI	CTTAAG	1 cut(s)	943
MwoI	GCNNNNNNNGC	3 cut(s)	93, 509, 568
NdeI	CATATG	2 cut(s)	831, 877
NdeII	GATC	3 cut(s)	368, 547, 626
NlaIII	CATG	5 cut(s)	142, 193, 212, 635, 644
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	4 cut(s)	14, 407, 814, 915
NspI	RCATGY	2 cut(s)	212, 635
PaeI	GCATGC	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	166, 934
PkrI	GCNGC	4 cut(s)	502, 561, 682, 870
PmaCI	CACGTG	1 cut(s)	506
PmlI	CACGTG	1 cut(s)	506
Ppu21I	YACGTR	2 cut(s)	321, 506
PspCI	CACGTG	1 cut(s)	506
PsuI	RGATCY	2 cut(s)	368, 547
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	876
SaqAI	TTAA	1 cut(s)	944
SatI	GCNGC	4 cut(s)	501, 560, 681, 869
Sau3AI	GATC	3 cut(s)	368, 547, 626
SduI	GDGCHC	2 cut(s)	38, 247
SfaNI	GCATC	4 cut(s)	398, 487, 737, 880
SmiMI	CAYNNNNRTG	1 cut(s)	876
SmlI	CTYRAG	1 cut(s)	943
SmoI	CTYRAG	1 cut(s)	943
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	7 cut(s)	196, 217, 266, 349, 419, 850, 905
SsiI	CCGC	3 cut(s)	22, 412, 559
SspMI	CTAG	1 cut(s)	480
TaaI	ACNGT	3 cut(s)	242, 611, 925
TaiI	ACGT	5 cut(s)	16, 323, 409, 508, 720
TaqI	TCGA	1 cut(s)	893
TasI	AATT	7 cut(s)	196, 217, 266, 349, 419, 850, 905
TauI	GCSGC	1 cut(s)	562
TfiI	GAWTC	2 cut(s)	166, 934
Tru1I	TTAA	1 cut(s)	944
Tru9I	TTAA	1 cut(s)	944
TscAI	CASTG	1 cut(s)	961
TseFI	GTSAC	4 cut(s)	14, 407, 814, 915
TseI	GCWGC	3 cut(s)	500, 680, 868
Tsp45I	GTSAC	4 cut(s)	14, 407, 814, 915
TspDTI	ATGAA	1 cut(s)	447
TspRI	CASTG	1 cut(s)	961
Vha464I	CTTAAG	1 cut(s)	943
VneI	GTGCAC	1 cut(s)	243
XagI	CCTNNNNNAGG	1 cut(s)	256
XapI	RAATTY	2 cut(s)	266, 850
XceI	RCATGY	2 cut(s)	212, 635
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.