Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036474.1

Orthogroup ID

OG0009679

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1353

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036474.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

actgcaatggttctctgccaccgtttttttgctcggcgatcacatgcttgccatgacagatttttgattgccactgctgttctctttcttgctgcaaagtctgaggagacacctcgccctttgaataacgtagtgagggcatcttgtgagattttccataagcaggatatcagtctcttgtcctatatactccctgttgactggtttgagcagtatcgggaacgggtgactgaggctgagcatatgatactggctactctaaattttgaactgaatgtgcagcatccatatgctcctcttacctcgatacttgataaattagggctctcacaaactgttttggtgaatctggccttaagcttggtcagtgaagggatctacacaagattagcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

131

Amino Acids

14.94

Weight (kDa)

6.55

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15100 FvH4_4g15100
malus_domestica	MD13G1188600.v1.1 MD16G1189200.v1.1
prunus_persica	Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1
pyrus_communis	pycom13g16300 pycom16g15920
rosa_chinensis	RchiOBHm_Chr4g0416761
rosa_laevigata	RLG00000007953
rosa_multiflora	Rmu_sc0036474.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360640
rosa_rugosa	Rorug04G0144600 Rorug04G0144700 Rorug04G0144800
rosa_samantha	Rh4AG207300 Rh4BG204500 Rh4CG218300 Rh4DG204400
rosa_wichuraiana	Rw4G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflII	CTTAAG	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	124, 269
AluBI	AGCT	1 cut(s)	360
AluI	AGCT	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	101, 179
AlwI	GGATC	1 cut(s)	383
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	92, 280
ApoI	RAATTY	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	238, 355
BanII	GRGCYC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	79, 292
BcoDI	GTCTC	2 cut(s)	101, 179
BfrI	CTTAAG	1 cut(s)	355
BisI	GCNGC	2 cut(s)	93, 281
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	2 cut(s)	94, 282
BmsI	GCATC	2 cut(s)	149, 292
Bpu1102I	GCTNAGC	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	206, 255
Bse3DI	GCAATG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	3 cut(s)	93, 222, 228
BseNI	ACTGG	2 cut(s)	206, 255
BseRI	GAGGAG	2 cut(s)	119, 285
BseXI	GCAGC	2 cut(s)	79, 292
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	2 cut(s)	101, 179
BsnI	GGCC	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	38, 375
Bsp1720I	GCTNAGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	3 cut(s)	94, 223, 229
BspPI	GGATC	1 cut(s)	383
BspTI	CTTAAG	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	206, 255
BssMI	GATC	2 cut(s)	38, 375
Bst4CI	ACNGT	2 cut(s)	23, 337
BstAFI	CTTAAG	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	102, 231, 237
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	41, 378
BstMAI	GTCTC	2 cut(s)	101, 179
BstMBI	GATC	2 cut(s)	38, 375
BstNSI	RCATGY	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	79, 292
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	72, 373
Cac8I	GCNNGC	1 cut(s)	49
CviAII	CATG	2 cut(s)	44, 53
CviJI	RGCY	5 cut(s)	236, 254, 325, 353, 360
CviKI_1	RGCY	5 cut(s)	236, 254, 325, 353, 360
DdeI	CTNAG	3 cut(s)	102, 231, 237
DpnI	GATC	2 cut(s)	40, 377
DpnII	GATC	2 cut(s)	38, 375
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	2 cut(s)	47, 56
FaiI	YATR	9 cut(s)	45, 54, 159, 186, 188, 243, 245, 289, 291
FatI	CATG	2 cut(s)	43, 52
FauNDI	CATATG	2 cut(s)	243, 289
Fnu4HI	GCNGC	2 cut(s)	93, 281
FokI	GGATG	1 cut(s)	270
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	93, 281
GluI	GCNGC	2 cut(s)	93, 281
HaeIII	GGCC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	47, 56
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	1 cut(s)	346
HphI	GGTGA	2 cut(s)	238, 355
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	2 cut(s)	23, 337
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	5, 95, 280
HpyF3I	CTNAG	3 cut(s)	102, 231, 237
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	47, 56
Kzo9I	GATC	2 cut(s)	38, 375
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	5 cut(s)	149, 187, 207, 236, 335
Lsp1109I	GCAGC	2 cut(s)	79, 292
LweI	GCATC	2 cut(s)	149, 292
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	40, 377
MboI	GATC	2 cut(s)	38, 375
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	2 cut(s)	262, 317
MnlI	CCTC	6 cut(s)	97, 123, 129, 226, 306, 313
MseI	TTAA	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	288
MspCI	CTTAAG	1 cut(s)	355
NdeI	CATATG	2 cut(s)	243, 289
NdeII	GATC	2 cut(s)	38, 375
NlaIII	CATG	2 cut(s)	47, 56
NmeAIII	GCCGAG	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	94, 282
PsuI	RGATCY	1 cut(s)	375
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	93, 281
Sau3AI	GATC	2 cut(s)	38, 375
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	4 cut(s)	115, 132, 305, 362
SfaNI	GCATC	2 cut(s)	149, 292
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	2 cut(s)	262, 317
TaaI	ACNGT	2 cut(s)	23, 337
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	305
TasI	AATT	2 cut(s)	262, 317
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	2 cut(s)	79, 373
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	92, 280
Tsp45I	GTSAC	1 cut(s)	226
TspRI	CASTG	2 cut(s)	79, 373
Vha464I	CTTAAG	1 cut(s)	355
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.