Rroxscaffold_5G00360640

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
41249684 .. 41256974
7291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360640.1

Sequence Viewer

Length: 1503 bp
ATGTCTTTTACACGTCACTTCCGCTCAGAAGGGGGCACTACTCGCGATGAGTATTGGCCGTCATTTAGTAGAAACAACTCCAAAAGCTTCAATAGCAATGCCAGACACAACAACAAGACCAACTACAATAACAACTGGAACATGAGCAGGAACAATAACTTTGTTAGGAATCATTACGATTTTCAGTATTACATGGGAAATTATAGAGAGCATGCCGATAATTCTAATCATTTCAAGCCAGACGGTGCACCATCCTATAAAAGGAGAAAATTTTCAGCTTCTACTTGGGGTGATGGTGGGAGACATTATCTGCCACCAAACACGTATGATTTCGCTCCTTCAACCTGCAATAATTATGTCCCTCCTACAAGATCCAACGGCATTGCCTCTGCATCTACCACCTGTAAACGTGACCGCTCAAAATTAGAAGAGGATGAAGTTGCCTTTATGTCAAGGGATGAGATTGAGAGATACTCCCCATCTAGGAAAGATGGTATAGATGCAGCACGTGAGGCACATTTGCGATACTCATATTGTTCGTACCTTCAGGATCTTGGTTTGCGGCTGGACTTGCCACAGACCACGATTGCTACTGCAATGGTTCTCTGCCACCGTTTTTTTGCTCGGCGATCACATGCTTGCCATGACAGATTTTTGATTGCCACTGCTGTTCTCTTTCTTGCTGCAAAGTCTGAGGAGACACCTCGCCCTTTGAATAACGTAGTGAGGGCATCTTGTGAGATTTTCCATAAGCAGGATATCAGTCTCTTGTCCTATATACTCCCTGTTGACTGGTTTGAGCAGTATCGGGAACGGGTGACTGAGGCTGAGCATATGATACTGGCTACTCTAAATTTTGAACTGAATGTGCAGCATCCATATGCTCCTCTTACCTCGATACTTGATAAATTAGGGCTCTCACAAACTGTTTTGGTGAATCTGGCCTTAAGCTTGGTCAGTGAAGGGAACATGCATGGGTTGCTGCCTGATTTGGATTCTGTTATAAATTTTGGTTGGGTATTCTCCTCTCCAGTACGAAATGGAATAGCGGACCTTATATTTGGTATAATGCCAGTCATCTGCTCCCATGCCCAAAAGAAAAGAAGAATAATGCAGTACATGAGAAATGAGAAATTTGTTATAGTGTATTCAACACATGTCCTGGTAGTGCTTTTCAGATCTAGACCTTGCTTAATCATTTATCAGGGTCAGACCTTGATTGGGAACTATTTGTTATGGTACTCTATCAGCAATCCTGCAGAGATTCTGGAAAATATTCTACCTGACTTGCTGCTTTTGCTTCGGAGTTCATTGTGGCTTCAGTTCAAACCGCATCATATTGCTGCTGGAGCTGCCTACCTTGCCGCAAAGTTTCTAAATTTGGATCTGAAACCTTATCAAAATATTTGGCAAGAGTTCCAGGCTACACCAGATGTCCTTCAAGCAGTTGATGGAACTCTTCTAAATGGATCAAAACATGGTTGTGGTCGCATTAGGCTTTAG

Protein Analysis

500

Amino Acids

57.45

Weight (kDa)

8.98

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 149 - 289 8.5e-14 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1004
Acc36I ACCTGC 1 cut(s) 353
AccBSI CCGCTC 2 cut(s) 24, 417
AccII CGCG 1 cut(s) 45
AciI CCGC 6 cut(s) 22, 415, 562, 1049, 1331, 1365
AclWI GGATC 4 cut(s) 366, 558, 1392, 1477
AcoI YGGCCR 1 cut(s) 56
AcsI RAATTY 5 cut(s) 269, 853, 1006, 1133, 1378
AcuI CTGAAG 2 cut(s) 530, 1304
AcvI CACGTG 1 cut(s) 509
AfaI GTAC 4 cut(s) 542, 1035, 1118, 1241
AfiI CCNNNNNNNGG 4 cut(s) 261, 483, 754, 1221
AflII CTTAAG 1 cut(s) 946
AflIII ACRYGT 3 cut(s) 11, 321, 1156
AgsI TTSAA 8 cut(s) 91, 235, 342, 715, 860, 1152, 1327, 1442
AjiI CACGTC 1 cut(s) 14
AjnI CCWGG 2 cut(s) 1161, 1419
AluBI AGCT 4 cut(s) 87, 278, 951, 1352
AluI AGCT 4 cut(s) 87, 278, 951, 1352
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 3 cut(s) 295, 692, 770
Alw44I GTGCAC 1 cut(s) 246
AlwI GGATC 4 cut(s) 366, 558, 1392, 1477
AoxI GGCC 2 cut(s) 56, 942
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 7 cut(s) 503, 683, 871, 982, 1291, 1343, 1352
ApoI RAATTY 5 cut(s) 269, 853, 1006, 1133, 1378
ArsI GACNNNNNNTTYG 2 cut(s) 1043, 1075
Asp700I GAANNNNTTC 2 cut(s) 271, 1275
AspS9I GGNCC 1 cut(s) 1051
AsuHPI GGTGA 3 cut(s) 302, 829, 946
AvaII GGWCC 1 cut(s) 1051
BaeGI GKGCMC 2 cut(s) 38, 250
BanII GRGCYC 1 cut(s) 918
BbrPI CACGTG 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 7 cut(s) 515, 670, 883, 969, 1278, 1330, 1339
BccI CCATC 5 cut(s) 259, 287, 485, 487, 1445
BceAI ACGGC 2 cut(s) 43, 394
BciT130I CCWGG 2 cut(s) 1163, 1421
BcoDI GTCTC 3 cut(s) 295, 692, 770
BfaI CTAG 2 cut(s) 483, 1182
BfmI CTRYAG 1 cut(s) 1257
BfrI CTTAAG 1 cut(s) 946
BfuAI ACCTGC 1 cut(s) 353
BglII AGATCT 1 cut(s) 1178
BisI GCNGC 9 cut(s) 504, 563, 684, 872, 983, 1292, 1344, 1353, 1365
BlpI GCTNAGC 1 cut(s) 828
BlsI GCNGC 9 cut(s) 505, 564, 685, 873, 984, 1293, 1345, 1354, 1366
Bme1390I CCNGG 2 cut(s) 1163, 1421
Bme18I GGWCC 1 cut(s) 1051
BmgBI CACGTC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 1051
BmrFI CCNGG 2 cut(s) 1163, 1421
BmsI GCATC 5 cut(s) 401, 490, 740, 883, 1342
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 2 cut(s) 1014, 1368
Bpu1102I GCTNAGC 1 cut(s) 828
BsaAI YACGTR 2 cut(s) 324, 509
Bsc4I CCNNNNNNNGG 4 cut(s) 261, 483, 754, 1221
Bse1I ACTGG 5 cut(s) 140, 797, 846, 1031, 1073
Bse3DI GCAATG 3 cut(s) 103, 381, 603
BseBI CCWGG 2 cut(s) 1163, 1421
BseGI GGATG 4 cut(s) 251, 439, 463, 874
BseLI CCNNNNNNNGG 4 cut(s) 261, 483, 754, 1221
BseMI GCAATG 3 cut(s) 103, 381, 603
BseMII CTCAG 4 cut(s) 39, 684, 813, 819
BseNI ACTGG 5 cut(s) 140, 797, 846, 1031, 1073
BseRI GAGGAG 3 cut(s) 710, 876, 1015
BseSI GKGCMC 2 cut(s) 38, 250
BseXI GCAGC 7 cut(s) 515, 670, 883, 969, 1278, 1330, 1339
BsgI GTGCAG 1 cut(s) 890
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 58, 944
BsiHKAI GWGCWC 1 cut(s) 250
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 4 cut(s) 261, 483, 754, 1221
BsmAI GTCTC 3 cut(s) 295, 692, 770
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 2 cut(s) 58, 944
Bsp1286I GDGCHC 3 cut(s) 38, 250, 918
Bsp143I GATC 6 cut(s) 371, 550, 629, 1178, 1384, 1469
Bsp1720I GCTNAGC 1 cut(s) 828
Bsp68I TCGCGA 1 cut(s) 45
BspACI CCGC 6 cut(s) 22, 415, 562, 1049, 1331, 1365
BspANI GGCC 2 cut(s) 58, 944
BspCNI CTCAG 4 cut(s) 38, 685, 814, 820
BspFNI CGCG 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 1261
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 4 cut(s) 366, 558, 1392, 1477
BspTI CTTAAG 1 cut(s) 946
BsrBI CCGCTC 2 cut(s) 24, 417
BsrDI GCAATG 3 cut(s) 103, 381, 603
BsrI ACTGG 5 cut(s) 140, 797, 846, 1031, 1073
BssMI GATC 6 cut(s) 371, 550, 629, 1178, 1384, 1469
Bst2UI CCWGG 2 cut(s) 1163, 1421
Bst4CI ACNGT 3 cut(s) 245, 614, 928
Bst6I CTCTTC 2 cut(s) 423, 1464
BstAFI CTTAAG 1 cut(s) 946
BstAPI GCANNNNNTGC 1 cut(s) 979
BstBAI YACGTR 2 cut(s) 324, 509
BstC8I GCNNGC 2 cut(s) 213, 640
BstDEI CTNAG 4 cut(s) 25, 693, 822, 828
BstENI CCTNNNNNAGG 1 cut(s) 259
BstF5I GGATG 4 cut(s) 251, 439, 463, 874
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 6 cut(s) 374, 553, 632, 1181, 1387, 1472
BstMAI GTCTC 3 cut(s) 295, 692, 770
BstMBI GATC 6 cut(s) 371, 550, 629, 1178, 1384, 1469
BstMWI GCNNNNNNNGC 9 cut(s) 42, 93, 512, 571, 979, 1297, 1349, 1352, 1361
BstNI CCWGG 2 cut(s) 1163, 1421
BstNSI RCATGY 4 cut(s) 215, 638, 973, 1160
BstSCI CCNGG 2 cut(s) 1161, 1419
BstSFI CTRYAG 1 cut(s) 1257
BstSLI GKGCMC 2 cut(s) 38, 250
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 7 cut(s) 515, 670, 883, 969, 1278, 1330, 1339
BstX2I RGATCY 4 cut(s) 371, 550, 1178, 1384
BstYI RGATCY 4 cut(s) 371, 550, 1178, 1384
BsuRI GGCC 2 cut(s) 58, 944
BtgZI GCGATG 1 cut(s) 60
BtrI CACGTC 1 cut(s) 14
BtsCI GGATG 4 cut(s) 251, 439, 463, 874
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 2 cut(s) 663, 964
BtuMI TCGCGA 1 cut(s) 45
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 2 cut(s) 213, 640
Cfr13I GGNCC 1 cut(s) 1051
Csp6I GTAC 4 cut(s) 541, 1034, 1117, 1240
CviQI GTAC 4 cut(s) 541, 1034, 1117, 1240
DdeI CTNAG 4 cut(s) 25, 693, 822, 828
DpnI GATC 6 cut(s) 373, 552, 631, 1180, 1386, 1471
DpnII GATC 6 cut(s) 371, 550, 629, 1178, 1384, 1469
EaeI YGGCCR 1 cut(s) 56
Eam1104I CTCTTC 2 cut(s) 423, 1464
EarI CTCTTC 2 cut(s) 423, 1464
Eco24I GRGCYC 1 cut(s) 918
Eco32I GATATC 1 cut(s) 760
Eco47I GGWCC 1 cut(s) 1051
Eco57I CTGAAG 2 cut(s) 530, 1304
Eco72I CACGTG 1 cut(s) 509
EcoNI CCTNNNNNAGG 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 1161, 1419
EcoRV GATATC 1 cut(s) 760
EcoT22I ATGCAT 1 cut(s) 975
EcoT38I GRGCYC 1 cut(s) 918
FaqI GGGAC 1 cut(s) 344
FauNDI CATATG 2 cut(s) 834, 880
Fnu4HI GCNGC 9 cut(s) 504, 563, 684, 872, 983, 1292, 1344, 1353, 1365
FokI GGATG 4 cut(s) 238, 446, 470, 861
FriOI GRGCYC 1 cut(s) 918
Fsp4HI GCNGC 9 cut(s) 504, 563, 684, 872, 983, 1292, 1344, 1353, 1365
FspBI CTAG 2 cut(s) 483, 1182
GluI GCNGC 9 cut(s) 504, 563, 684, 872, 983, 1292, 1344, 1353, 1365
GsuI CTGGAG 2 cut(s) 1014, 1368
HaeIII GGCC 2 cut(s) 58, 944
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HindIII AAGCTT 2 cut(s) 85, 949
HinfI GANTC 4 cut(s) 169, 937, 995, 1264
HphI GGTGA 3 cut(s) 302, 829, 946
Hpy166II GTNNAC 3 cut(s) 248, 407, 790
Hpy188I TCNGA 6 cut(s) 28, 694, 1178, 1212, 1305, 1389
Hpy188III TCNNGA 5 cut(s) 44, 548, 809, 1182, 1268
Hpy8I GTNNAC 3 cut(s) 248, 407, 790
HpyAV CCTTC 5 cut(s) 23, 348, 554, 956, 1448
HpyCH4III ACNGT 3 cut(s) 245, 614, 928
HpyCH4IV ACGT 5 cut(s) 13, 323, 409, 508, 720
HpyF10VI GCNNNNNNNGC 9 cut(s) 42, 93, 512, 571, 979, 1297, 1349, 1352, 1361
HpyF3I CTNAG 4 cut(s) 25, 693, 822, 828
HpySE526I ACGT 5 cut(s) 13, 323, 409, 508, 720
Kzo9I GATC 6 cut(s) 371, 550, 629, 1178, 1384, 1469
LmnI GCTCC 4 cut(s) 340, 889, 1088, 1349
Lsp1109I GCAGC 7 cut(s) 515, 670, 883, 969, 1278, 1330, 1339
LweI GCATC 5 cut(s) 401, 490, 740, 883, 1342
MaeI CTAG 2 cut(s) 483, 1182
MaeII ACGT 5 cut(s) 13, 323, 409, 508, 720
MaeIII GTNAC 3 cut(s) 14, 410, 817
MalI GATC 6 cut(s) 373, 552, 631, 1180, 1386, 1471
MbiI CCGCTC 2 cut(s) 24, 417
MboI GATC 6 cut(s) 371, 550, 629, 1178, 1384, 1469
MboII GAAGA 3 cut(s) 440, 1116, 1451
MflI RGATCY 4 cut(s) 371, 550, 1178, 1384
MhlI GDGCHC 3 cut(s) 38, 250, 918
MmeI TCCRAC 1 cut(s) 399
Mph1103I ATGCAT 1 cut(s) 975
MroXI GAANNNNTTC 2 cut(s) 271, 1275
MseI TTAA 2 cut(s) 947, 1193
MslI CAYNNNNRTG 2 cut(s) 879, 1482
MspCI CTTAAG 1 cut(s) 946
MspR9I CCNGG 2 cut(s) 1163, 1421
MvaI CCWGG 2 cut(s) 1163, 1421
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 9 cut(s) 42, 93, 512, 571, 979, 1297, 1349, 1352, 1361
NdeI CATATG 2 cut(s) 834, 880
NdeII GATC 6 cut(s) 371, 550, 629, 1178, 1384, 1469
NmeAIII GCCGAG 1 cut(s) 604
NmuCI GTSAC 3 cut(s) 14, 410, 817
NruI TCGCGA 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 975
NspI RCATGY 4 cut(s) 215, 638, 973, 1160
PaeI GCATGC 1 cut(s) 215
PciI ACATGT 1 cut(s) 1156
PdmI GAANNNNTTC 2 cut(s) 271, 1275
PfeI GAWTC 4 cut(s) 169, 937, 995, 1264
PkrI GCNGC 9 cut(s) 505, 564, 685, 873, 984, 1293, 1345, 1354, 1366
PmaCI CACGTG 1 cut(s) 509
PmlI CACGTG 1 cut(s) 509
Ppu21I YACGTR 2 cut(s) 324, 509
PscI ACATGT 1 cut(s) 1156
PsiI TTATAA 1 cut(s) 1004
Psp6I CCWGG 2 cut(s) 1161, 1419
PspCI CACGTG 1 cut(s) 509
PspGI CCWGG 2 cut(s) 1161, 1419
PspPI GGNCC 1 cut(s) 1051
PstI CTGCAG 1 cut(s) 1261
PsuI RGATCY 4 cut(s) 371, 550, 1178, 1384
RruI TCGCGA 1 cut(s) 45
RsaI GTAC 4 cut(s) 542, 1035, 1118, 1241
RsaNI GTAC 4 cut(s) 541, 1034, 1117, 1240
RseI CAYNNNNRTG 2 cut(s) 879, 1482
SaqAI TTAA 2 cut(s) 947, 1193
SatI GCNGC 9 cut(s) 504, 563, 684, 872, 983, 1292, 1344, 1353, 1365
Sau3AI GATC 6 cut(s) 371, 550, 629, 1178, 1384, 1469
Sau96I GGNCC 1 cut(s) 1051
ScrFI CCNGG 2 cut(s) 1163, 1421
SduI GDGCHC 3 cut(s) 38, 250, 918
SfaNI GCATC 5 cut(s) 401, 490, 740, 883, 1342
SfcI CTRYAG 1 cut(s) 1257
SinI GGWCC 1 cut(s) 1051
SmiMI CAYNNNNRTG 2 cut(s) 879, 1482
SmlI CTYRAG 1 cut(s) 946
SmoI CTYRAG 1 cut(s) 946
SphI GCATGC 1 cut(s) 215
SsiI CCGC 6 cut(s) 22, 415, 562, 1049, 1331, 1365
SspI AATATT 2 cut(s) 1276, 1405
SspMI CTAG 2 cut(s) 483, 1182
StyD4I CCNGG 2 cut(s) 1161, 1419
TaaI ACNGT 3 cut(s) 245, 614, 928
TaiI ACGT 5 cut(s) 16, 326, 412, 511, 723
TaqI TCGA 1 cut(s) 896
TatI WGTACW 1 cut(s) 1116
TauI GCSGC 2 cut(s) 565, 1367
TfiI GAWTC 4 cut(s) 169, 937, 995, 1264
Tru1I TTAA 2 cut(s) 947, 1193
Tru9I TTAA 2 cut(s) 947, 1193
TscAI CASTG 2 cut(s) 670, 964
TseFI GTSAC 3 cut(s) 14, 410, 817
TseI GCWGC 7 cut(s) 503, 683, 871, 982, 1291, 1343, 1352
Tsp45I GTSAC 3 cut(s) 14, 410, 817
TspDTI ATGAA 2 cut(s) 450, 1299
TspRI CASTG 2 cut(s) 670, 964
Vha464I CTTAAG 1 cut(s) 946
VneI GTGCAC 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 1051
XagI CCTNNNNNAGG 1 cut(s) 259
XapI RAATTY 5 cut(s) 269, 853, 1006, 1133, 1378
XbaI TCTAGA 1 cut(s) 1181
XceI RCATGY 4 cut(s) 215, 638, 973, 1160
XmnI GAANNNNTTC 2 cut(s) 271, 1275
XspI CTAG 2 cut(s) 483, 1182
Zsp2I ATGCAT 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.