Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009679

Physical Location & Seq

Genomic Coordinates Forward (+)

16107089 .. 16111570

Gene Structure 4482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1188600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCCTTGTTTGGTTTTTGTTATATTTAGAATAATGTCTTTTGTACGTAACAATCGCTCACAAGGGGGCACTGCTGGTGATGAGTACTGGCCGTCTCTCGGTAGAAATGACGTCAAAAGCTTCAACAACTTCAACCACTTCAACCACAACAACAACAACTGGAACAGGAGCAGGACTAATAACTTCGTTAAGAATTATAACAATTATCAGAAGTACAATTATAACAATTACCAGAAGTACGTGGGTGGTTATAAGGAGCATGCTGATAATTCTAATTATATCAAGCCTGACAGTGCATCATCGTTTAAGAGGAGAAAATTTTCAGATTCTACTTGGGGTGATGGTGGGAGAGATTATCTGCCACCCAACACATATGAATTTATCTCTTCTTCGTGCAATAATTATGTTCCTCATCCAAGATCCAATGGTGATGCCTCTGCATCTACTACTGGTAAACGTGACCGCACAAAGTTAGATGAAGATGAACTGCCCTTTATGTCAAGGGATGAGATAGAGAGATGCTCCCCATCTAGAAAAGATGGTATAGATTCAGTACGTGAAGCACACTTGCGCTACTCATACTGTTCTTACCTTCAGAATCTTGGATTGCGGCTTGACTTGCCCCAGACTACCATCGCTACTGCAATGGTTCTCTGTCATCGGTTTTTCGCCCGGCGGTCACATGCTTGCCATGATAGATTTTTGATTGCTACTGCCGCTCTGTTCCTAGCAGCAAAGTCCGAGGAGACACCACGCCCTTTGAATACTGTGTTGAGAACATCTTCTGAGATTCTCCATAAGCAGGATATCAGTTTCTTGTCCCATATGCTCCCTATTGACTGGTTTGAGCAGCATCGGGAACGGGTGACTGAGGCTGAGCAAATGATACTGACCACTCTAAATTTTGAACTTGGTGTGCAGCATCCATATGCACCACTTACATCTACTCTTAACAAATTAGGTCTTTCACAAACAATTCTGGTGAATCTGTCCTTAAGCTTGGTCAGTGAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

339

Amino Acids

38.94

Weight (kDa)

8.79

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	167 - 304	1.5e-14	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15100 FvH4_4g15100
malus_domestica	MD13G1188600.v1.1 MD16G1189200.v1.1
prunus_persica	Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1
pyrus_communis	pycom13g16300 pycom16g15920
rosa_chinensis	RchiOBHm_Chr4g0416761
rosa_laevigata	RLG00000007953
rosa_multiflora	Rmu_sc0036474.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360640
rosa_rugosa	Rorug04G0144600 Rorug04G0144700 Rorug04G0144800
rosa_samantha	Rh4AG207300 Rh4BG204500 Rh4CG218300 Rh4DG204400
rosa_wichuraiana	Rw4G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	198, 222, 252
AatII	GACGTC	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	719
AciI	CCGC	4 cut(s)	463, 610, 676, 717
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	89
AcsI	RAATTY	3 cut(s)	317, 377, 901
AcuI	CTGAAG	1 cut(s)	578
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	5 cut(s)	45, 86, 215, 239, 555
AfiI	CCNNNNNNNGG	2 cut(s)	98, 802
AflII	CTTAAG	1 cut(s)	994
AgsI	TTSAA	5 cut(s)	124, 133, 142, 763, 908
AluBI	AGCT	2 cut(s)	120, 999
AluI	AGCT	2 cut(s)	120, 999
Alw26I	GTCTC	2 cut(s)	99, 740
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	3 cut(s)	731, 850, 919
ApoI	RAATTY	3 cut(s)	317, 377, 901
Asp700I	GAANNNNTTC	2 cut(s)	319, 781
AspLEI	GCGC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	5 cut(s)	89, 350, 440, 877, 994
BaeGI	GKGCMC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	743, 862, 931
BccI	CCATC	4 cut(s)	335, 533, 535, 641
BceAI	ACGGC	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	99, 740
BfaI	CTAG	2 cut(s)	531, 728
BfrI	CTTAAG	1 cut(s)	994
BisI	GCNGC	5 cut(s)	611, 717, 732, 851, 920
BlpI	GCTNAGC	1 cut(s)	876
BlsI	GCNGC	5 cut(s)	612, 718, 733, 852, 921
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	673
BmrFI	CCNGG	1 cut(s)	673
BmsI	GCATC	6 cut(s)	305, 421, 449, 509, 862, 931
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
Bpu1102I	GCTNAGC	1 cut(s)	876
BpuMI	CCSGG	1 cut(s)	673
BsaAI	YACGTR	3 cut(s)	47, 241, 557
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 802
Bse1I	ACTGG	4 cut(s)	92, 164, 454, 845
Bse3DI	GCAATG	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	741
BseGI	GGATG	3 cut(s)	412, 511, 922
BseLI	CCNNNNNNNGG	2 cut(s)	98, 802
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	3 cut(s)	777, 861, 867
BseNI	ACTGG	4 cut(s)	92, 164, 454, 845
BseRI	GAGGAG	2 cut(s)	325, 758
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	743, 862, 931
BsgI	GTGCAG	1 cut(s)	938
BshFI	GGCC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	673
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	2 cut(s)	98, 802
BsmAI	GTCTC	2 cut(s)	99, 740
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	805
BsnI	GGCC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	419
Bsp1720I	GCTNAGC	1 cut(s)	876
BspACI	CCGC	4 cut(s)	463, 610, 676, 717
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	3 cut(s)	778, 862, 868
BspPI	GGATC	1 cut(s)	414
BspTI	CTTAAG	1 cut(s)	994
BsrBI	CCGCTC	1 cut(s)	719
BsrDI	GCAATG	1 cut(s)	651
BsrI	ACTGG	4 cut(s)	92, 164, 454, 845
BssECI	CCNNGG	1 cut(s)	741
BssMI	GATC	1 cut(s)	419
BssNI	GRCGYC	1 cut(s)	111
Bst4CI	ACNGT	3 cut(s)	293, 584, 769
Bst6I	CTCTTC	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	994
BstBAI	YACGTR	3 cut(s)	47, 241, 557
BstC8I	GCNNGC	2 cut(s)	261, 688
BstDEI	CTNAG	3 cut(s)	786, 870, 876
BstF5I	GGATG	3 cut(s)	412, 511, 922
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	1 cut(s)	422
BstMAI	GTCTC	2 cut(s)	99, 740
BstMBI	GATC	1 cut(s)	419
BstMWI	GCNNNNNNNGC	2 cut(s)	619, 716
BstNSI	RCATGY	2 cut(s)	263, 686
BstSCI	CCNGG	1 cut(s)	671
BstSLI	GKGCMC	1 cut(s)	71
BstSNI	TACGTA	1 cut(s)	47
BstV1I	GCAGC	3 cut(s)	743, 862, 931
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	91
BtgZI	GCGATG	1 cut(s)	619
BtsCI	GGATG	3 cut(s)	412, 511, 922
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	3 cut(s)	69, 298, 1012
Cac8I	GCNNGC	2 cut(s)	261, 688
CfoI	GCGC	1 cut(s)	573
Csp6I	GTAC	5 cut(s)	44, 85, 214, 238, 554
CspCI	CAANNNNNGTGG	2 cut(s)	741, 776
CviAII	CATG	3 cut(s)	260, 683, 692
CviJI	RGCY	6 cut(s)	91, 120, 286, 613, 875, 999
CviKI_1	RGCY	6 cut(s)	91, 120, 286, 613, 875, 999
CviQI	GTAC	5 cut(s)	44, 85, 214, 238, 554
DdeI	CTNAG	3 cut(s)	786, 870, 876
DpnI	GATC	1 cut(s)	421
DpnII	GATC	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco105I	TACGTA	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	578
EcoRV	GATATC	1 cut(s)	808
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	3 cut(s)	263, 686, 695
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	3 cut(s)	259, 682, 691
FauNDI	CATATG	3 cut(s)	373, 825, 928
Fnu4HI	GCNGC	5 cut(s)	611, 717, 732, 851, 920
FokI	GGATG	3 cut(s)	399, 518, 909
Fsp4HI	GCNGC	5 cut(s)	611, 717, 732, 851, 920
FspBI	CTAG	2 cut(s)	531, 728
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	5 cut(s)	611, 717, 732, 851, 920
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	673
HhaI	GCGC	1 cut(s)	573
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	263, 686, 695
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HindIII	AAGCTT	2 cut(s)	118, 997
HinfI	GANTC	5 cut(s)	326, 548, 598, 790, 985
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	5 cut(s)	89, 350, 440, 877, 994
Hpy166II	GTNNAC	1 cut(s)	455
Hpy188I	TCNGA	5 cut(s)	210, 325, 597, 742, 787
Hpy188III	TCNNGA	2 cut(s)	531, 857
Hpy8I	GTNNAC	1 cut(s)	455
HpyAV	CCTTC	2 cut(s)	602, 1004
HpyCH4III	ACNGT	3 cut(s)	293, 584, 769
HpyCH4IV	ACGT	5 cut(s)	46, 111, 240, 457, 556
HpyCH4V	TGCA	6 cut(s)	296, 396, 440, 644, 919, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	619, 716
HpyF3I	CTNAG	3 cut(s)	786, 870, 876
HpySE526I	ACGT	5 cut(s)	46, 111, 240, 457, 556
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	263, 686, 695
HspAI	GCGC	1 cut(s)	571
Kzo9I	GATC	1 cut(s)	419
LmnI	GCTCC	4 cut(s)	168, 256, 527, 834
Lsp1109I	GCAGC	3 cut(s)	743, 862, 931
LweI	GCATC	6 cut(s)	305, 421, 449, 509, 862, 931
MaeI	CTAG	2 cut(s)	531, 728
MaeII	ACGT	5 cut(s)	46, 111, 240, 457, 556
MaeIII	GTNAC	4 cut(s)	47, 458, 678, 865
MalI	GATC	1 cut(s)	421
MbiI	CCGCTC	1 cut(s)	719
MboI	GATC	1 cut(s)	419
MboII	GAAGA	4 cut(s)	378, 381, 491, 774
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	303, 420, 445, 736, 865
MroXI	GAANNNNTTC	2 cut(s)	319, 781
MseI	TTAA	4 cut(s)	189, 306, 951, 995
MslI	CAYNNNNRTG	1 cut(s)	927
MspCI	CTTAAG	1 cut(s)	994
MspI	CCGG	1 cut(s)	673
MspR9I	CCNGG	1 cut(s)	673
MwoI	GCNNNNNNNGC	2 cut(s)	619, 716
NciI	CCSGG	1 cut(s)	673
NdeI	CATATG	3 cut(s)	373, 825, 928
NdeII	GATC	1 cut(s)	419
NlaIII	CATG	3 cut(s)	263, 686, 695
NmuCI	GTSAC	3 cut(s)	458, 678, 865
NspI	RCATGY	2 cut(s)	263, 686
PaeI	GCATGC	1 cut(s)	263
PdmI	GAANNNNTTC	2 cut(s)	319, 781
PfeI	GAWTC	5 cut(s)	326, 548, 598, 790, 985
PkrI	GCNGC	5 cut(s)	612, 718, 733, 852, 921
Ppu21I	YACGTR	3 cut(s)	47, 241, 557
PsiI	TTATAA	3 cut(s)	198, 222, 252
PsuI	RGATCY	1 cut(s)	419
RsaI	GTAC	5 cut(s)	45, 86, 215, 239, 555
RsaNI	GTAC	5 cut(s)	44, 85, 214, 238, 554
RseI	CAYNNNNRTG	1 cut(s)	927
SaqAI	TTAA	4 cut(s)	189, 306, 951, 995
SatI	GCNGC	5 cut(s)	611, 717, 732, 851, 920
Sau3AI	GATC	1 cut(s)	419
ScaI	AGTACT	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	673
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	9 cut(s)	49, 114, 122, 243, 460, 559, 594, 964, 1001
SfaNI	GCATC	6 cut(s)	305, 421, 449, 509, 862, 931
SmiMI	CAYNNNNRTG	1 cut(s)	927
SmlI	CTYRAG	1 cut(s)	994
SmoI	CTYRAG	1 cut(s)	994
SnaBI	TACGTA	1 cut(s)	47
SphI	GCATGC	1 cut(s)	263
SsiI	CCGC	4 cut(s)	463, 610, 676, 717
SspMI	CTAG	2 cut(s)	531, 728
StyD4I	CCNGG	1 cut(s)	671
TaaI	ACNGT	3 cut(s)	293, 584, 769
TaiI	ACGT	5 cut(s)	49, 114, 243, 460, 559
TatI	WGTACW	2 cut(s)	84, 213
TauI	GCSGC	2 cut(s)	613, 719
TfiI	GAWTC	5 cut(s)	326, 548, 598, 790, 985
Tru1I	TTAA	4 cut(s)	189, 306, 951, 995
Tru9I	TTAA	4 cut(s)	189, 306, 951, 995
TscAI	CASTG	3 cut(s)	76, 298, 1012
TseFI	GTSAC	3 cut(s)	458, 678, 865
TseI	GCWGC	3 cut(s)	731, 850, 919
Tsp45I	GTSAC	3 cut(s)	458, 678, 865
TspDTI	ATGAA	3 cut(s)	390, 492, 498
TspRI	CASTG	3 cut(s)	76, 298, 1012
Vha464I	CTTAAG	1 cut(s)	994
XapI	RAATTY	3 cut(s)	317, 377, 901
XbaI	TCTAGA	1 cut(s)	530
XceI	RCATGY	2 cut(s)	263, 686
XmnI	GAANNNNTTC	2 cut(s)	319, 781
XspI	CTAG	2 cut(s)	531, 728
ZraI	GACGTC	1 cut(s)	112
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.