Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009679

Physical Location & Seq

Genomic Coordinates Forward (+)

16476091 .. 16482302

Gene Structure 6212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1189200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCTTTTGCACGTAACTATCGCTCACAAGGGGGCACCACTGGTGAAGAGTATTGGCCCACCCTTGGTAGAAATGACTTCAAAAACTTCCACAACTTCAACCACAGGAACAACAACAACTGGAACAGGAGCCGGACCAGTAGCTTTGCTAAGAATTATAACAATTTCCCCAATTTCCAGAATTACGTGGGTGGTTATAAGGAGCATGCTGATAATTCTAATTATTTCAAGCCTGACAGTGCACCATCGTTTAAGAGGAGAAAATTTTCAGATTCTACTTGGGGTGATGGTGGGAGACATTATCTGCCACCCAACACATATGAGTTTGTCTCGTCTACCTGCAATAATTATCTTCCTTATGCAAGATCCAATGGTGATGCCTCTGCATCTACTACTGGTAAACGTGACCGCTCAAAATTAGATGAGGATGAACTGCCCTTTATGTCAAGGGATGAGATAGAGAGATGCTCCCCGTCTAGAAAAGATGGTATAGATTCAGTACGTGAAGCACACTTGCGCTACTCATATTGTTCTTACCTTCAGAATCTTGGATTGCGGCTTGACTTGCCCCAGACTACTATCGCTACAGCAATGGTTCTCTGCCATCGGTTTTTTTCCCGGCGATCACACGCTTGCCATGATAGATTTTTGATTGCTACTGCCGCTCTTTTCCTAGCTGCAAAGTCCGAGGAGACACCACGCCCTTTGAATACTGTGTTGAGAATGTCTTCTGAGATTTCCCATAAGCAGGATATCAGTTTCTTGTCCTATATGCTCCCCATTGACTGGTTTGAGCAGTATCGGGAACGGGTGACTGAGGCTGAGCAAATGATACTGACCACTCTAAATTTTGAACTTGGTGTGCAGCATCCATATGCACCGCTTACGTCTATTCTTAACAAATTAGGTCTCTCACAAACTGTTCTGGTGAATCTGTCCTTAAGCTTGGTCAGTGAAGGGCTTCGGAGTTCTCTGTGGCTCCAGTTCAAACCGCATCATATTGCGGCAGGAGCTGCCTACCTTGCCGCAAAGTTTCTAAATTTGGATCTTGATTCTTATAAAAATATATGGCAGGAATTCCAAGCTACACCAGATATTCTTCAAGCCGTTGCTCAGCAGTTGATGGAACTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

379

Amino Acids

43.51

Weight (kDa)

8.47

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	150 - 286	3.9e-15	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009679)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15100 FvH4_4g15100
malus_domestica	MD13G1188600.v1.1 MD16G1189200.v1.1
prunus_persica	Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1 Prupe.1G155700_v2.0.a1
pyrus_communis	pycom13g16300 pycom16g15920
rosa_chinensis	RchiOBHm_Chr4g0416761
rosa_laevigata	RLG00000007953
rosa_multiflora	Rmu_sc0036474.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360640
rosa_rugosa	Rorug04G0144600 Rorug04G0144700 Rorug04G0144800
rosa_samantha	Rh4AG207300 Rh4BG204500 Rh4CG218300 Rh4DG204400
rosa_wichuraiana	Rw4G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	159, 198, 1059
Acc36I	ACCTGC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	786
AccBSI	CCGCTC	2 cut(s)	411, 665
AccI	GTMKAC	1 cut(s)	335
AciI	CCGC	7 cut(s)	409, 556, 663, 881, 992, 1004, 1026
AclWI	GGATC	2 cut(s)	360, 1053
AcsI	RAATTY	4 cut(s)	263, 847, 1039, 1076
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	3 cut(s)	65, 748, 786
AflII	CTTAAG	1 cut(s)	940
AgsI	TTSAA	7 cut(s)	82, 100, 229, 709, 854, 988, 1103
AluBI	AGCT	5 cut(s)	144, 677, 945, 1013, 1085
AluI	AGCT	5 cut(s)	144, 677, 945, 1013, 1085
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	4 cut(s)	289, 334, 686, 914
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	360, 1053
AlwNI	CAGNNNCTG	1 cut(s)	1013
AoxI	GGCC	1 cut(s)	56
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	3 cut(s)	677, 865, 1013
ApoI	RAATTY	4 cut(s)	263, 847, 1039, 1076
Asp700I	GAANNNNTTC	3 cut(s)	265, 727, 960
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	57, 135
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	5 cut(s)	56, 296, 386, 823, 940
AvaII	GGWCC	1 cut(s)	135
BaeGI	GKGCMC	2 cut(s)	38, 244
BanI	GGYRCC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	664, 877, 1000
BccI	CCATC	5 cut(s)	253, 281, 479, 612, 1117
BceAI	ACGGC	1 cut(s)	1091
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	4 cut(s)	289, 334, 686, 914
BfaI	CTAG	3 cut(s)	477, 674, 1135
BfmI	CTRYAG	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	940
BfuAI	ACCTGC	1 cut(s)	347
BisI	GCNGC	7 cut(s)	557, 663, 678, 866, 1005, 1014, 1026
BlpI	GCTNAGC	2 cut(s)	822, 1113
BlsI	GCNGC	7 cut(s)	558, 664, 679, 867, 1006, 1015, 1027
Bme1390I	CCNGG	1 cut(s)	619
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	57, 135
BmiI	GGNNCC	3 cut(s)	37, 131, 980
BmrFI	CCNGG	1 cut(s)	619
BmsI	GCATC	5 cut(s)	367, 395, 455, 877, 1003
BpiI	GAAGAC	1 cut(s)	720
BplI	GAGNNNNNCTC	4 cut(s)	314, 346, 452, 484
BpmI	CTGGAG	1 cut(s)	965
Bpu1102I	GCTNAGC	2 cut(s)	822, 1113
BpuMI	CCSGG	1 cut(s)	619
BsaAI	YACGTR	3 cut(s)	14, 187, 503
BsaI	GGTCTC	1 cut(s)	914
BsaJI	CCNNGG	2 cut(s)	64, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 748, 786
Bse1I	ACTGG	6 cut(s)	46, 125, 138, 400, 791, 982
Bse3DI	GCAATG	1 cut(s)	597
BseDI	CCNNGG	2 cut(s)	64, 687
BseGI	GGATG	3 cut(s)	433, 457, 868
BseLI	CCNNNNNNNGG	3 cut(s)	65, 748, 786
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	4 cut(s)	723, 807, 813, 1127
BseNI	ACTGG	6 cut(s)	46, 125, 138, 400, 791, 982
BseRI	GAGGAG	2 cut(s)	271, 704
BseSI	GKGCMC	2 cut(s)	38, 244
BseXI	GCAGC	3 cut(s)	664, 877, 1000
BsgI	GTGCAG	1 cut(s)	884
BshFI	GGCC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	133, 619
BslI	CCNNNNNNNGG	3 cut(s)	65, 748, 786
BsmAI	GTCTC	4 cut(s)	289, 334, 686, 914
BsnI	GGCC	1 cut(s)	58
Bso31I	GGTCTC	1 cut(s)	914
Bsp1286I	GDGCHC	2 cut(s)	38, 244
Bsp143I	GATC	3 cut(s)	365, 623, 1045
Bsp1720I	GCTNAGC	2 cut(s)	822, 1113
BspACI	CCGC	7 cut(s)	409, 556, 663, 881, 992, 1004, 1026
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	4 cut(s)	724, 808, 814, 1126
BspLI	GGNNCC	3 cut(s)	37, 131, 980
BspMI	ACCTGC	1 cut(s)	347
BspPI	GGATC	2 cut(s)	360, 1053
BspT107I	GGYRCC	1 cut(s)	35
BspTI	CTTAAG	1 cut(s)	940
BspTNI	GGTCTC	1 cut(s)	914
BsrBI	CCGCTC	2 cut(s)	411, 665
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	6 cut(s)	46, 125, 138, 400, 791, 982
BssECI	CCNNGG	2 cut(s)	64, 687
BssMI	GATC	3 cut(s)	365, 623, 1045
BssT1I	CCWWGG	1 cut(s)	64
Bst4CI	ACNGT	3 cut(s)	239, 715, 922
Bst6I	CTCTTC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	940
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstBAI	YACGTR	3 cut(s)	14, 187, 503
BstC8I	GCNNGC	2 cut(s)	207, 634
BstDEI	CTNAG	5 cut(s)	150, 732, 816, 822, 1113
BstF5I	GGATG	3 cut(s)	433, 457, 868
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	3 cut(s)	368, 626, 1048
BstMAI	GTCTC	4 cut(s)	289, 334, 686, 914
BstMBI	GATC	3 cut(s)	365, 623, 1045
BstMWI	GCNNNNNNNGC	5 cut(s)	565, 662, 1010, 1013, 1022
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	585
BstSLI	GKGCMC	2 cut(s)	38, 244
BstV1I	GCAGC	3 cut(s)	664, 877, 1000
BstV2I	GAAGAC	1 cut(s)	720
BstX2I	RGATCY	2 cut(s)	365, 1045
BstYI	RGATCY	2 cut(s)	365, 1045
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	433, 457, 868
BtsIMutI	CAGTG	3 cut(s)	39, 244, 958
BveI	ACCTGC	1 cut(s)	347
Cac8I	GCNNGC	2 cut(s)	207, 634
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	2 cut(s)	57, 135
Csp6I	GTAC	1 cut(s)	500
CspCI	CAANNNNNGTGG	2 cut(s)	687, 722
CviAII	CATG	2 cut(s)	206, 638
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	5 cut(s)	150, 732, 816, 822, 1113
DpnI	GATC	3 cut(s)	367, 625, 1047
DpnII	GATC	3 cut(s)	365, 623, 1045
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	914
Eco32I	GATATC	1 cut(s)	754
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	1076
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	2 cut(s)	209, 641
FatI	CATG	2 cut(s)	205, 637
FauNDI	CATATG	2 cut(s)	319, 874
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	7 cut(s)	557, 663, 678, 866, 1005, 1014, 1026
FokI	GGATG	3 cut(s)	440, 464, 855
Fsp4HI	GCNGC	7 cut(s)	557, 663, 678, 866, 1005, 1014, 1026
FspBI	CTAG	3 cut(s)	477, 674, 1135
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	7 cut(s)	557, 663, 678, 866, 1005, 1014, 1026
GsuI	CTGGAG	1 cut(s)	965
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	2 cut(s)	133, 619
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	2 cut(s)	209, 641
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	943
HinfI	GANTC	5 cut(s)	272, 494, 544, 931, 1052
HpaII	CCGG	2 cut(s)	133, 619
HphI	GGTGA	5 cut(s)	56, 296, 386, 823, 940
Hpy166II	GTNNAC	3 cut(s)	242, 336, 401
Hpy188I	TCNGA	5 cut(s)	271, 543, 688, 733, 966
Hpy188III	TCNNGA	4 cut(s)	178, 477, 803, 1049
Hpy8I	GTNNAC	3 cut(s)	242, 336, 401
HpyAV	CCTTC	2 cut(s)	548, 950
HpyCH4III	ACNGT	3 cut(s)	239, 715, 922
HpyCH4IV	ACGT	5 cut(s)	13, 186, 403, 502, 887
HpyCH4V	TGCA	8 cut(s)	11, 242, 342, 362, 386, 680, 865, 878
HpyF10VI	GCNNNNNNNGC	5 cut(s)	565, 662, 1010, 1013, 1022
HpyF3I	CTNAG	5 cut(s)	150, 732, 816, 822, 1113
HpySE526I	ACGT	5 cut(s)	13, 186, 403, 502, 887
Hsp92II	CATG	2 cut(s)	209, 641
HspAI	GCGC	1 cut(s)	517
Kzo9I	GATC	3 cut(s)	365, 623, 1045
LmnI	GCTCC	6 cut(s)	129, 202, 473, 780, 984, 1010
Lsp1109I	GCAGC	3 cut(s)	664, 877, 1000
LweI	GCATC	5 cut(s)	367, 395, 455, 877, 1003
MaeI	CTAG	3 cut(s)	477, 674, 1135
MaeII	ACGT	5 cut(s)	13, 186, 403, 502, 887
MaeIII	GTNAC	3 cut(s)	14, 404, 811
MalI	GATC	3 cut(s)	367, 625, 1047
MbiI	CCGCTC	2 cut(s)	411, 665
MboI	GATC	3 cut(s)	365, 623, 1045
MboII	GAAGA	5 cut(s)	59, 344, 720, 1091, 1123
MflI	RGATCY	2 cut(s)	365, 1045
MhlI	GDGCHC	2 cut(s)	38, 244
MnlI	CCTC	5 cut(s)	249, 391, 418, 682, 811
MroXI	GAANNNNTTC	3 cut(s)	265, 727, 960
MseI	TTAA	3 cut(s)	252, 897, 941
MslI	CAYNNNNRTG	1 cut(s)	873
MspCI	CTTAAG	1 cut(s)	940
MspI	CCGG	2 cut(s)	133, 619
MspR9I	CCNGG	1 cut(s)	619
MwoI	GCNNNNNNNGC	5 cut(s)	565, 662, 1010, 1013, 1022
NciI	CCSGG	1 cut(s)	619
NdeI	CATATG	2 cut(s)	319, 874
NdeII	GATC	3 cut(s)	365, 623, 1045
NlaIII	CATG	2 cut(s)	209, 641
NlaIV	GGNNCC	3 cut(s)	37, 131, 980
NmuCI	GTSAC	2 cut(s)	404, 811
NspI	RCATGY	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	209
PdmI	GAANNNNTTC	3 cut(s)	265, 727, 960
PfeI	GAWTC	5 cut(s)	272, 494, 544, 931, 1052
PflMI	CCANNNNNTGG	1 cut(s)	786
PkrI	GCNGC	7 cut(s)	558, 664, 679, 867, 1006, 1015, 1027
Ppu21I	YACGTR	3 cut(s)	14, 187, 503
PsiI	TTATAA	3 cut(s)	159, 198, 1059
PspN4I	GGNNCC	3 cut(s)	37, 131, 980
PspPI	GGNCC	2 cut(s)	57, 135
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	2 cut(s)	365, 1045
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
RseI	CAYNNNNRTG	1 cut(s)	873
SaqAI	TTAA	3 cut(s)	252, 897, 941
SatI	GCNGC	7 cut(s)	557, 663, 678, 866, 1005, 1014, 1026
Sau3AI	GATC	3 cut(s)	365, 623, 1045
Sau96I	GGNCC	2 cut(s)	57, 135
ScrFI	CCNGG	1 cut(s)	619
SduI	GDGCHC	2 cut(s)	38, 244
SfaNI	GCATC	5 cut(s)	367, 395, 455, 877, 1003
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	1 cut(s)	940
SmoI	CTYRAG	1 cut(s)	940
SphI	GCATGC	1 cut(s)	209
SsiI	CCGC	7 cut(s)	409, 556, 663, 881, 992, 1004, 1026
SspMI	CTAG	3 cut(s)	477, 674, 1135
StyD4I	CCNGG	1 cut(s)	617
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	3 cut(s)	239, 715, 922
TaiI	ACGT	5 cut(s)	16, 189, 406, 505, 890
TauI	GCSGC	4 cut(s)	559, 665, 1007, 1028
TfiI	GAWTC	5 cut(s)	272, 494, 544, 931, 1052
Tru1I	TTAA	3 cut(s)	252, 897, 941
Tru9I	TTAA	3 cut(s)	252, 897, 941
TscAI	CASTG	3 cut(s)	46, 244, 958
TseFI	GTSAC	2 cut(s)	404, 811
TseI	GCWGC	3 cut(s)	677, 865, 1013
Tsp45I	GTSAC	2 cut(s)	404, 811
TspDTI	ATGAA	1 cut(s)	444
TspRI	CASTG	3 cut(s)	46, 244, 958
Van91I	CCANNNNNTGG	1 cut(s)	786
Vha464I	CTTAAG	1 cut(s)	940
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	4 cut(s)	263, 847, 1039, 1076
XbaI	TCTAGA	1 cut(s)	476
XceI	RCATGY	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	335
XmnI	GAANNNNTTC	3 cut(s)	265, 727, 960
XspI	CTAG	3 cut(s)	477, 674, 1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.