Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Forward (+)

18786681 .. 18787960

Gene Structure 1280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15181.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGATTTTGATGGTTATAAAAGATGTTGGAGGAAAAGCAGCACCAGCCAGAGCCTCGCCTCCATCCTCAACAACCCCAATGCCTCCTCCTCCTCCTCCTGGTCCGCCTGGTGGTCCCTCCTCCGCCTCCGTCGCCGCCCCGCCCGAATTCCTCCCCCTCCTCCCCAAATCCGCCTCCGACTCCCTCACCCGATCCGACTTCCAGCCCTACCTCTCCTCCATCTCCGATCAATACAACCGCTTCGACGACATACTCAACCACCTCAGAAAGGAGAATCTCGACGACCTTGACTCCATCGGCGGCCAGGGCGAGGCTCTCGTCGCGTGTCTCCGCGAAGTCCTCGCCCTCTATTTCAAGGAGGACTTCGCTCTCGAGGACTGCGCCACCTTCAAGTCGGCGTGCCCGTTCTCCGGAGAAGCTGACGCATTACATGGACGTGGTGGAGCTTCACCTGGTGAAGGAGATCTCGCTACGATCGAACTCGTTTTTCGAGGCGCAGGGGCAGCTGGAAGACTTGAATGTGAAGATCGTGGAGGGATGCAATCGGATAAGGGAGCTCAAGGAGACCAATTCGCTGTTGGATGTGGATTTGGTGGACTCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

202

Amino Acids

20.74

Weight (kDa)

4.53

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AccII	CGCG	2 cut(s)	323, 333
AccIII	TCCGGA	1 cut(s)	410
AciI	CCGC	8 cut(s)	104, 123, 135, 140, 171, 238, 300, 331
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	146
AdeI	CACNNNGTG	1 cut(s)	455
AfiI	CCNNNNNNNGG	6 cut(s)	98, 110, 268, 310, 410, 458
AgsI	TTSAA	3 cut(s)	355, 391, 518
AjiI	CACGTC	1 cut(s)	437
AjnI	CCWGG	4 cut(s)	97, 106, 303, 451
AluBI	AGCT	4 cut(s)	419, 446, 506, 557
AluI	AGCT	4 cut(s)	419, 446, 506, 557
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	332, 558
AlwI	GGATC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	410
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	2 cut(s)	38, 503
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	383, 497
AspS9I	GGNCC	2 cut(s)	101, 113
AsuHPI	GGTGA	3 cut(s)	178, 441, 467
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	101, 113
BaeGI	GKGCMC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	2 cut(s)	50, 515
BccI	CCATC	4 cut(s)	4, 70, 227, 302
BciT130I	CCWGG	4 cut(s)	99, 108, 305, 453
BcoDI	GTCTC	2 cut(s)	332, 558
BfaI	CTAG	1 cut(s)	604
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	4 cut(s)	39, 135, 301, 504
BlsI	GCNGC	4 cut(s)	40, 136, 302, 505
Bme1390I	CCNGG	4 cut(s)	99, 108, 305, 453
Bme18I	GGWCC	2 cut(s)	101, 113
BmeT110I	CYCGRG	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	101, 113
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	4 cut(s)	99, 108, 305, 453
BmsI	GCATC	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	517
BpuEI	CTTGAG	1 cut(s)	543
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 275, 305
Bsc4I	CCNNNNNNNGG	6 cut(s)	98, 110, 268, 310, 410, 458
BseAI	TCCGGA	1 cut(s)	410
BseBI	CCWGG	4 cut(s)	99, 108, 305, 453
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	3 cut(s)	62, 543, 587
BseLI	CCNNNNNNNGG	6 cut(s)	98, 110, 268, 310, 410, 458
BseMII	CTCAG	1 cut(s)	277
BseRI	GAGGAG	7 cut(s)	75, 78, 81, 84, 109, 149, 205
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	50, 515
Bsh1236I	CGCG	2 cut(s)	323, 333
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	6 cut(s)	98, 110, 268, 310, 410, 458
BsmAI	GTCTC	2 cut(s)	332, 558
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	303
Bso31I	GGTCTC	1 cut(s)	558
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	404, 559
Bsp13I	TCCGGA	1 cut(s)	410
Bsp143I	GATC	5 cut(s)	191, 226, 463, 474, 526
BspACI	CCGC	8 cut(s)	104, 123, 135, 140, 171, 238, 300, 331
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	276
BspEI	TCCGGA	1 cut(s)	410
BspFNI	CGCG	2 cut(s)	323, 333
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	5 cut(s)	191, 226, 463, 474, 526
Bst2UI	CCWGG	4 cut(s)	99, 108, 305, 453
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	1 cut(s)	263
BstENI	CCTNNNNNAGG	2 cut(s)	266, 456
BstF5I	GGATG	3 cut(s)	62, 543, 587
BstFNI	CGCG	2 cut(s)	323, 333
BstHHI	GCGC	2 cut(s)	383, 497
BstKTI	GATC	5 cut(s)	194, 229, 466, 477, 529
BstMAI	GTCTC	2 cut(s)	332, 558
BstMBI	GATC	5 cut(s)	191, 226, 463, 474, 526
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 131, 306, 320, 503
BstNI	CCWGG	4 cut(s)	99, 108, 305, 453
BstSCI	CCNGG	4 cut(s)	97, 106, 303, 451
BstSLI	GKGCMC	1 cut(s)	404
BstUI	CGCG	2 cut(s)	323, 333
BstV1I	GCAGC	2 cut(s)	50, 515
BstV2I	GAAGAC	1 cut(s)	517
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	437
BtsCI	GGATG	3 cut(s)	62, 543, 587
Cac8I	GCNNGC	1 cut(s)	400
CfoI	GCGC	2 cut(s)	383, 497
Cfr13I	GGNCC	2 cut(s)	101, 113
CseI	GACGC	1 cut(s)	431
CsiI	ACCWGGT	1 cut(s)	451
CviAII	CATG	1 cut(s)	431
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	5 cut(s)	193, 228, 465, 476, 528
DpnII	GATC	5 cut(s)	191, 226, 463, 474, 526
DraIII	CACNNNGTG	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	301
EciI	GGCGGA	3 cut(s)	93, 112, 160
Ecl136II	GAGCTC	1 cut(s)	557
Eco24I	GRGCYC	1 cut(s)	559
Eco31I	GGTCTC	1 cut(s)	558
Eco47I	GGWCC	2 cut(s)	101, 113
Eco53kI	GAGCTC	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	557
EcoNI	CCTNNNNNAGG	2 cut(s)	266, 456
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	4 cut(s)	97, 106, 303, 451
EcoT38I	GRGCYC	1 cut(s)	559
FaeI	CATG	1 cut(s)	434
FaiI	YATR	3 cut(s)	17, 251, 432
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	1 cut(s)	430
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	39, 135, 301, 504
FokI	GGATG	3 cut(s)	49, 550, 594
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	4 cut(s)	39, 135, 301, 504
FspBI	CTAG	1 cut(s)	604
GlaI	GCGC	2 cut(s)	382, 496
GluI	GCNGC	4 cut(s)	39, 135, 301, 504
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	2 cut(s)	383, 497
Hin1II	CATG	1 cut(s)	434
Hin6I	GCGC	2 cut(s)	381, 495
HinP1I	GCGC	2 cut(s)	381, 495
HinfI	GANTC	4 cut(s)	179, 274, 290, 597
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	3 cut(s)	178, 441, 467
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	5 cut(s)	178, 196, 226, 266, 547
Hpy188III	TCNNGA	3 cut(s)	278, 371, 411
Hpy8I	GTNNAC	1 cut(s)	596
Hpy99I	CGWCG	4 cut(s)	134, 248, 284, 323
HpyAV	CCTTC	2 cut(s)	397, 452
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	1 cut(s)	541
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 131, 306, 320, 503
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	1 cut(s)	434
HspAI	GCGC	2 cut(s)	381, 495
Kpn2I	TCCGGA	1 cut(s)	410
Kzo9I	GATC	5 cut(s)	191, 226, 463, 474, 526
LmnI	GCTCC	2 cut(s)	443, 554
Lsp1109I	GCAGC	2 cut(s)	50, 515
LweI	GCATC	1 cut(s)	528
MabI	ACCWGGT	1 cut(s)	451
MaeI	CTAG	1 cut(s)	604
MaeII	ACGT	1 cut(s)	436
MalI	GATC	5 cut(s)	193, 228, 465, 476, 528
MboI	GATC	5 cut(s)	191, 226, 463, 474, 526
MboII	GAAGA	2 cut(s)	522, 536
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	2 cut(s)	404, 559
MluCI	AATT	2 cut(s)	146, 569
MlyI	GAGTC	3 cut(s)	173, 284, 591
MmeI	TCCRAC	4 cut(s)	7, 201, 219, 559
MroI	TCCGGA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	4 cut(s)	99, 108, 305, 453
MvaI	CCWGG	4 cut(s)	99, 108, 305, 453
MvnI	CGCG	2 cut(s)	323, 333
MwoI	GCNNNNNNNGC	5 cut(s)	44, 131, 306, 320, 503
NdeII	GATC	5 cut(s)	191, 226, 463, 474, 526
NlaIII	CATG	1 cut(s)	434
NlaIV	GGNNCC	1 cut(s)	115
NmeAIII	GCCGAG	1 cut(s)	579
PaeR7I	CTCGAG	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	2 cut(s)	401, 474
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	40, 136, 302, 505
Ple19I	CGATCG	1 cut(s)	477
PleI	GAGTC	3 cut(s)	173, 284, 591
PpsI	GAGTC	3 cut(s)	173, 284, 591
PsiI	TTATAA	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	559
Psp6I	CCWGG	4 cut(s)	97, 106, 303, 451
PspGI	CCWGG	4 cut(s)	97, 106, 303, 451
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	101, 113
PsuI	RGATCY	1 cut(s)	463
PvuI	CGATCG	1 cut(s)	477
PvuII	CAGCTG	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	559
SatI	GCNGC	4 cut(s)	39, 135, 301, 504
Sau3AI	GATC	5 cut(s)	191, 226, 463, 474, 526
Sau96I	GGNCC	2 cut(s)	101, 113
SchI	GAGTC	3 cut(s)	173, 284, 591
ScrFI	CCNGG	4 cut(s)	99, 108, 305, 453
SduI	GDGCHC	2 cut(s)	404, 559
SexAI	ACCWGGT	1 cut(s)	451
SfaNI	GCATC	1 cut(s)	528
Sfr274I	CTCGAG	1 cut(s)	371
SinI	GGWCC	2 cut(s)	101, 113
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	2 cut(s)	371, 558
SmoI	CTYRAG	2 cut(s)	371, 558
Sse9I	AATT	2 cut(s)	146, 569
SsiI	CCGC	8 cut(s)	104, 123, 135, 140, 171, 238, 300, 331
SspMI	CTAG	1 cut(s)	604
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	4 cut(s)	97, 106, 303, 451
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	5 cut(s)	243, 279, 372, 477, 490
TasI	AATT	2 cut(s)	146, 569
TauI	GCSGC	2 cut(s)	137, 303
TfiI	GAWTC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	38, 503
TspGWI	ACGGA	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	101, 113
XagI	CCTNNNNNAGG	2 cut(s)	266, 456
XapI	RAATTY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	371
XspI	CTAG	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.