Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Forward (+)

4435406 .. 4436565

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG022700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTGTTGTTGGGGACATCCAGAGCTAGAAAAGGGGGCCGACGATATCACTGTCGGAGCAGTGCATAGACAACAAAAAGACAAGTTGTCAGAGGGGATCATCCATAGAGATGTCAAGGCTGATAATATTCTACTGACACAGGATTTTGTGCCTCATATATGTGATTTTAGCAAAAGTGGCAACCGAAACAATGACTCATCACAATGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

70

Amino Acids

7.87

Weight (kDa)

5.67

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	30 - 66	1.5e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	104
AhdI	GACNNNNNGTC	1 cut(s)	85
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
AlwI	GGATC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	26
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	37
BseGI	GGATG	2 cut(s)	16, 99
BshFI	GGCC	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	104
BssMI	GATC	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	16, 99
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	16, 99
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	48, 66
Cfr13I	GGNCC	1 cut(s)	36
CviJI	RGCY	3 cut(s)	25, 38, 119
CviKI_1	RGCY	3 cut(s)	25, 38, 119
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
DriI	GACNNNNNGTC	1 cut(s)	85
Eam1105I	GACNNNNNGTC	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	46
FaiI	YATR	5 cut(s)	66, 105, 156, 158, 160
FaqI	GGGAC	1 cut(s)	27
FokI	GGATG	2 cut(s)	3, 86
FspBI	CTAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	194
Hpy188I	TCNGA	2 cut(s)	56, 91
Hpy188III	TCNNGA	1 cut(s)	20
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	2 cut(s)	33, 125
MaeI	CTAG	1 cut(s)	26
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	2 cut(s)	85, 162
MseI	TTAA	1 cut(s)	211
MslI	CAYNNNNRTG	3 cut(s)	108, 159, 202
MwoI	GCNNNNNNNGC	1 cut(s)	177
NdeII	GATC	1 cut(s)	96
NlaIV	GGNNCC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	36
RseI	CAYNNNNRTG	3 cut(s)	108, 159, 202
SaqAI	TTAA	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	188
SetI	ASST	1 cut(s)	27
SgeI	CNNG	5 cut(s)	32, 38, 94, 127, 152
SmiMI	CAYNNNNRTG	3 cut(s)	108, 159, 202
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	211
Tru9I	TTAA	1 cut(s)	211
TscAI	CASTG	2 cut(s)	55, 66
TspRI	CASTG	2 cut(s)	55, 66
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.