Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001954.1

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Forward (+)

27851 .. 30472

Gene Structure 2622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001954.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgggctttgagcccgagcaaattacgattcggtttcgatatcctggattacaggttcgtttctgcctcgacttcgactccatcggcgggaagggcgaagctctcgtcccttgtctccaggaagttcccgccctctatttcaaagaggacttcgcattggaagacggcgccaccttccgctccgcctaccccttctccggcgtcaccgagaacctcgtcctccaggagaagctctcgcattacttggacccagaagacccagaactgtgttgttggggacatccagagctagaaaagggggccgacgatatcactgtcggagcagtgcacagacaacaaaaagacaaggaggtttcggtccgatcaaactccttctttgaggctcagagccagttggaggatttgaatgtgaagatcgttgaggtatgcaatcggattcaggagcttaaggagaccattttgctgttggatgtggatttggtggactctgcgaggcagattcaggagctcaatgttaccaggagtaatttgttggctcttcaacagaagctgaggctgattctctatgtcaatcaagctctttcggttctcaaactggtattccattgcactttatctcttcggtttagtaatacatatcgattcttgtatgtttacgactttacgacaattgttagcagtttagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

229

Amino Acids

26.19

Weight (kDa)

4.86

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	180
AciI	CCGC	4 cut(s)	87, 129, 178, 183
AcyI	GRCGYC	2 cut(s)	168, 201
AfiI	CCNNNNNNNGG	3 cut(s)	87, 197, 397
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	142, 406, 542
AjnI	CCWGG	4 cut(s)	43, 117, 222, 518
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	7 cut(s)	101, 232, 289, 445, 508, 550, 578
AluI	AGCT	7 cut(s)	101, 232, 289, 445, 508, 550, 578
Alw21I	GWGCWC	2 cut(s)	330, 510
Alw26I	GTCTC	2 cut(s)	119, 446
Alw44I	GTGCAC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	1 cut(s)	300
ApaLI	GTGCAC	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	247, 300, 358
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	2 cut(s)	247, 358
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	2 cut(s)	15, 510
BbsI	GAAGAC	2 cut(s)	168, 261
Bbv12I	GWGCWC	2 cut(s)	330, 510
BbvCI	CCTCAGC	1 cut(s)	551
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	4 cut(s)	45, 119, 224, 520
BcoDI	GTCTC	2 cut(s)	119, 446
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	171
BfrI	CTTAAG	1 cut(s)	446
Bme1390I	CCNGG	4 cut(s)	45, 119, 224, 520
Bme18I	GGWCC	2 cut(s)	247, 358
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	3 cut(s)	247, 300, 358
BmiI	GGNNCC	3 cut(s)	169, 249, 301
BmrFI	CCNGG	4 cut(s)	45, 119, 224, 520
BpiI	GAAGAC	2 cut(s)	168, 261
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpmI	CTGGAG	2 cut(s)	101, 206
Bpu10I	CCTNAGC	1 cut(s)	551
Bsa29I	ATCGAT	1 cut(s)	640
BsaHI	GRCGYC	2 cut(s)	168, 201
BsaI	GGTCTC	1 cut(s)	446
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 179, 209
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 197, 397
Bse1I	ACTGG	2 cut(s)	391, 600
Bse3DI	GCAATG	1 cut(s)	604
BseBI	CCWGG	4 cut(s)	45, 119, 224, 520
BseCI	ATCGAT	1 cut(s)	640
BseGI	GGATG	2 cut(s)	280, 475
BseLI	CCNNNNNNNGG	3 cut(s)	87, 197, 397
BseMI	GCAATG	1 cut(s)	604
BseMII	CTCAG	2 cut(s)	398, 542
BseNI	ACTGG	2 cut(s)	391, 600
BseSI	GKGCMC	1 cut(s)	330
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	640
BsiHKAI	GWGCWC	2 cut(s)	330, 510
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	92, 291
BslI	CCNNNNNNNGG	3 cut(s)	87, 197, 397
BsmAI	GTCTC	2 cut(s)	119, 446
BsmFI	GGGAC	2 cut(s)	92, 291
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	446
BsoBI	CYCGRG	1 cut(s)	14
Bsp1286I	GDGCHC	3 cut(s)	15, 330, 510
Bsp143I	GATC	2 cut(s)	362, 414
BspACI	CCGC	4 cut(s)	87, 129, 178, 183
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	2 cut(s)	397, 543
BspDI	ATCGAT	1 cut(s)	640
BspLI	GGNNCC	3 cut(s)	169, 249, 301
BspQI	GCTCTTC	1 cut(s)	543
BspT107I	GGYRCC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	446
BsrBI	CCGCTC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	604
BsrI	ACTGG	2 cut(s)	391, 600
BssMI	GATC	2 cut(s)	362, 414
BssNI	GRCGYC	2 cut(s)	168, 201
Bst2UI	CCWGG	4 cut(s)	45, 119, 224, 520
Bst4CI	ACNGT	2 cut(s)	267, 316
Bst6I	CTCTTC	2 cut(s)	543, 624
BstACI	GRCGYC	2 cut(s)	168, 201
BstAFI	CTTAAG	1 cut(s)	446
BstDEI	CTNAG	2 cut(s)	384, 551
BstF5I	GGATG	2 cut(s)	280, 475
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	365, 417
BstMAI	GTCTC	2 cut(s)	119, 446
BstMBI	GATC	2 cut(s)	362, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNI	CCWGG	4 cut(s)	45, 119, 224, 520
BstSCI	CCNGG	4 cut(s)	43, 117, 222, 518
BstSLI	GKGCMC	1 cut(s)	330
BstV2I	GAAGAC	2 cut(s)	168, 261
Bsu15I	ATCGAT	1 cut(s)	640
BsuRI	GGCC	1 cut(s)	302
BsuTUI	ATCGAT	1 cut(s)	640
BtsCI	GGATG	2 cut(s)	280, 475
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	312, 330
CaiI	CAGNNNCTG	1 cut(s)	550
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	247, 300, 358
ClaI	ATCGAT	1 cut(s)	640
CpoI	CGGWCCG	1 cut(s)	358
CseI	GACGC	1 cut(s)	190
CspI	CGGWCCG	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	384, 551
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	2 cut(s)	364, 416
DpnII	GATC	2 cut(s)	362, 414
Eam1104I	CTCTTC	2 cut(s)	543, 624
EarI	CTCTTC	2 cut(s)	543, 624
EciI	GGCGGA	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	508
Eco24I	GRGCYC	2 cut(s)	15, 510
Eco31I	GGTCTC	1 cut(s)	446
Eco32I	GATATC	2 cut(s)	41, 310
Eco47I	GGWCC	2 cut(s)	247, 358
Eco53kI	GAGCTC	1 cut(s)	508
Eco88I	CYCGRG	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	508
EcoRII	CCWGG	4 cut(s)	43, 117, 222, 518
EcoRV	GATATC	2 cut(s)	41, 310
EcoT38I	GRGCYC	2 cut(s)	15, 510
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaiI	YATR	4 cut(s)	427, 567, 637, 651
FaqI	GGGAC	2 cut(s)	92, 291
FauI	CCCGC	2 cut(s)	80, 136
FokI	GGATG	2 cut(s)	267, 482
FriOI	GRGCYC	2 cut(s)	15, 510
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	169
GsuI	CTGGAG	2 cut(s)	101, 206
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	2 cut(s)	168, 201
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	7 cut(s)	28, 77, 436, 485, 499, 559, 642
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	3 cut(s)	328, 484, 655
Hpy188I	TCNGA	4 cut(s)	320, 362, 387, 435
Hpy188III	TCNNGA	3 cut(s)	284, 440, 503
Hpy8I	GTNNAC	3 cut(s)	328, 484, 655
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	4 cut(s)	85, 184, 202, 382
HpyCH4III	ACNGT	2 cut(s)	267, 316
HpyCH4V	TGCA	3 cut(s)	328, 429, 609
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	2 cut(s)	384, 551
Hsp92I	GRCGYC	2 cut(s)	168, 201
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	362, 414
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	4 cut(s)	185, 320, 442, 505
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	2 cut(s)	202, 514
MalI	GATC	2 cut(s)	364, 416
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	2 cut(s)	362, 414
MboII	GAAGA	5 cut(s)	173, 266, 424, 530, 611
MfeI	CAATTG	1 cut(s)	669
MhlI	GDGCHC	3 cut(s)	15, 330, 510
MluCI	AATT	3 cut(s)	21, 526, 669
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	71, 479
MmeI	TCCRAC	3 cut(s)	298, 375, 447
MseI	TTAA	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	4 cut(s)	45, 119, 224, 520
MunI	CAATTG	1 cut(s)	669
MvaI	CCWGG	4 cut(s)	45, 119, 224, 520
MwoI	GCNNNNNNNGC	1 cut(s)	93
NarI	GGCGCC	1 cut(s)	168
NdeII	GATC	2 cut(s)	362, 414
NlaIV	GGNNCC	3 cut(s)	169, 249, 301
NmuCI	GTSAC	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	543
PfeI	GAWTC	5 cut(s)	28, 436, 499, 559, 642
PfoI	TCCNGGA	3 cut(s)	43, 117, 222
PleI	GAGTC	2 cut(s)	71, 479
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	2 cut(s)	71, 479
Psp124BI	GAGCTC	1 cut(s)	510
Psp6I	CCWGG	4 cut(s)	43, 117, 222, 518
PspGI	CCWGG	4 cut(s)	43, 117, 222, 518
PspN4I	GGNNCC	3 cut(s)	169, 249, 301
PspPI	GGNCC	3 cut(s)	247, 300, 358
PstNI	CAGNNNCTG	1 cut(s)	550
Rsr2I	CGGWCCG	1 cut(s)	358
RsrII	CGGWCCG	1 cut(s)	358
SacI	GAGCTC	1 cut(s)	510
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	447
Sau3AI	GATC	2 cut(s)	362, 414
Sau96I	GGNCC	3 cut(s)	247, 300, 358
SchI	GAGTC	2 cut(s)	71, 479
ScrFI	CCNGG	4 cut(s)	45, 119, 224, 520
SduI	GDGCHC	3 cut(s)	15, 330, 510
SfoI	GGCGCC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	247, 358
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	3 cut(s)	21, 526, 669
SsiI	CCGC	4 cut(s)	87, 129, 178, 183
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	510
StyD4I	CCNGG	4 cut(s)	43, 117, 222, 518
TaaI	ACNGT	2 cut(s)	267, 316
TaqI	TCGA	4 cut(s)	37, 69, 75, 640
TaqII	GACCGA	1 cut(s)	346
TasI	AATT	3 cut(s)	21, 526, 669
TfiI	GAWTC	5 cut(s)	28, 436, 499, 559, 642
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	319, 330
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspRI	CASTG	2 cut(s)	319, 330
Vha464I	CTTAAG	1 cut(s)	446
VneI	GTGCAC	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	247, 358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.