Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Reverse (-)

31714057 .. 31717779

Gene Structure 3723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG312200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGTCATGTTATGGGCTTCGAGCCCGAGCAAATTACGATTCGGTTTCGATATCCTGGATTACAGGTTTGTTTCTAAGAGCCTCGACTTCGACTCCATCGGCGGCCAGGGCGAAGCTCTCATCGCTTGTCTCCGGGAAGTCCCCGCCCTCTATTTCAAAGAGGACTTCGCATTGGAAGACGGCGCCACCTTCCGCTCCACCTGCCCCTTCTCCGGCGTCGCCGAGAATCTCGTCCTCCAGGAGAAGCTCTTGCATTACTTGGACCCAGAAGACCCAGAACTGTGTTGTTGGAGACACCCAGAGCTAGGAAAGGGGGCCGACGATATCACTGTCGGAGCAGTGCACAAACAACAAAAAGACAAGGTGGAGCTTCACCTGGTGAAGGAGATCTCGGTCCGATCAAACTCCTTCTTCGTGGCTCAGAGCCAGTTGCAGGATTTGAATGTGAAGATCGTTGAGGGATGCAATTGGATTCGGGAGCTTAAGGAGACCATTTTGCTGTTGGATGTGGATTTGGTGGACTCTGTGAGGCAGATTCAGGAGCTCAATGTTACCAAGAGTAATTTGTTGGCTCTTCAACAGAAGCTGAGGCTGATTCTCTATGTCAATCAAGCTCTTTCGGTTCTTAAACTGCTTGTTGCCTCTGCAGATTGTGCTGGAGCTTTGGATGTCACAGACGACCTACAACATTTGCTGGTGTTTGTGTTGAATATAGATACTAGAAGATTATTCTCACTGTGTGTTTCTGATCCACCGTCTTCCCTGTCTTCCCTTAGTCCCAAAATCCTTTTGTACAGTCTTTCAATTACTCAATTGAGTTTTCTCTGTTTATCTAATGTCATACTGTTTGTGTTGAATAGAGATACCAGAAGATTATTCTCACTGAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

297

Amino Acids

33.4

Weight (kDa)

5.32

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	195
AciI	CCGC	3 cut(s)	102, 144, 193
AclWI	GGATC	1 cut(s)	743
AcoI	YGGCCR	1 cut(s)	103
AcyI	GRCGYC	2 cut(s)	183, 216
AdeI	CACNNNGTG	2 cut(s)	379, 740
AfaI	GTAC	1 cut(s)	794
AfiI	CCNNNNNNNGG	4 cut(s)	212, 305, 382, 433
AflII	CTTAAG	1 cut(s)	482
AgsI	TTSAA	6 cut(s)	157, 442, 578, 709, 804, 856
AjnI	CCWGG	4 cut(s)	54, 105, 237, 375
AluBI	AGCT	9 cut(s)	116, 247, 304, 370, 481, 544, 586, 614, 662
AluI	AGCT	9 cut(s)	116, 247, 304, 370, 481, 544, 586, 614, 662
Alw21I	GWGCWC	2 cut(s)	345, 546
Alw26I	GTCTC	3 cut(s)	134, 286, 482
Alw44I	GTGCAC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	743
AlwNI	CAGNNNCTG	1 cut(s)	586
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	103, 315
ApaLI	GTGCAC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	3 cut(s)	262, 315, 394
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	365, 391
AvaI	CYCGRG	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	262, 394
BaeGI	GKGCMC	1 cut(s)	345
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	2 cut(s)	26, 546
BbsI	GAAGAC	4 cut(s)	183, 276, 750, 759
Bbv12I	GWGCWC	2 cut(s)	345, 546
BbvCI	CCTCAGC	1 cut(s)	587
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	4 cut(s)	56, 107, 239, 377
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	3 cut(s)	134, 286, 482
BfaI	CTAG	2 cut(s)	305, 720
BfmI	CTRYAG	1 cut(s)	645
BfoI	RGCGCY	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	209
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	5 cut(s)	56, 107, 134, 239, 377
Bme18I	GGWCC	2 cut(s)	262, 394
BmeT110I	CYCGRG	1 cut(s)	25
BmgT120I	GGNCC	3 cut(s)	262, 315, 394
BmiI	GGNNCC	3 cut(s)	184, 264, 316
BmrFI	CCNGG	5 cut(s)	56, 107, 134, 239, 377
BmsI	GCATC	1 cut(s)	452
BpiI	GAAGAC	4 cut(s)	183, 276, 750, 759
BpmI	CTGGAG	2 cut(s)	221, 678
Bpu10I	CCTNAGC	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	2 cut(s)	183, 216
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 305, 382, 433
Bse1I	ACTGG	1 cut(s)	427
BseBI	CCWGG	4 cut(s)	56, 107, 239, 377
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	3 cut(s)	467, 511, 673
BseLI	CCNNNNNNNGG	4 cut(s)	212, 305, 382, 433
BseMII	CTCAG	3 cut(s)	434, 578, 875
BseNI	ACTGG	1 cut(s)	427
BseSI	GKGCMC	1 cut(s)	345
BshFI	GGCC	2 cut(s)	105, 317
BshNI	GGYRCC	1 cut(s)	182
BsiHKAI	GWGCWC	2 cut(s)	345, 546
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	133, 213
BslFI	GGGAC	2 cut(s)	125, 762
BslI	CCNNNNNNNGG	4 cut(s)	212, 305, 382, 433
BsmAI	GTCTC	3 cut(s)	134, 286, 482
BsmFI	GGGAC	2 cut(s)	125, 762
BsnI	GGCC	2 cut(s)	105, 317
Bso31I	GGTCTC	1 cut(s)	482
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	3 cut(s)	26, 345, 546
Bsp1407I	TGTACA	1 cut(s)	792
Bsp143I	GATC	4 cut(s)	387, 398, 450, 748
BspACI	CCGC	3 cut(s)	102, 144, 193
BspANI	GGCC	2 cut(s)	105, 317
BspCNI	CTCAG	3 cut(s)	433, 579, 876
BspLI	GGNNCC	3 cut(s)	184, 264, 316
BspMAI	CTGCAG	1 cut(s)	649
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	743
BspQI	GCTCTTC	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	482
BsrBI	CCGCTC	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	792
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	4 cut(s)	387, 398, 450, 748
BssNI	GRCGYC	2 cut(s)	183, 216
Bst2UI	CCWGG	4 cut(s)	56, 107, 239, 377
Bst4CI	ACNGT	6 cut(s)	282, 331, 738, 756, 797, 846
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	2 cut(s)	183, 216
BstAFI	CTTAAG	1 cut(s)	482
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstAUI	TGTACA	1 cut(s)	792
BstDEI	CTNAG	5 cut(s)	75, 420, 587, 773, 884
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	3 cut(s)	467, 511, 673
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	4 cut(s)	390, 401, 453, 751
BstMAI	GTCTC	3 cut(s)	134, 286, 482
BstMBI	GATC	4 cut(s)	387, 398, 450, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 122, 201, 653
BstNI	CCWGG	4 cut(s)	56, 107, 239, 377
BstSCI	CCNGG	5 cut(s)	54, 105, 132, 237, 375
BstSFI	CTRYAG	1 cut(s)	645
BstSLI	GKGCMC	1 cut(s)	345
BstV2I	GAAGAC	4 cut(s)	183, 276, 750, 759
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	105, 317
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	3 cut(s)	467, 511, 673
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	4 cut(s)	327, 345, 734, 881
BveI	ACCTGC	1 cut(s)	209
CaiI	CAGNNNCTG	1 cut(s)	586
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	3 cut(s)	262, 315, 394
CpoI	CGGWCCG	1 cut(s)	394
CseI	GACGC	1 cut(s)	205
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	793
CspI	CGGWCCG	1 cut(s)	394
CviAII	CATG	1 cut(s)	7
CviQI	GTAC	1 cut(s)	793
DdeI	CTNAG	5 cut(s)	75, 420, 587, 773, 884
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	4 cut(s)	389, 400, 452, 750
DpnII	GATC	4 cut(s)	387, 398, 450, 748
DraIII	CACNNNGTG	2 cut(s)	379, 740
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Ecl136II	GAGCTC	1 cut(s)	544
Eco24I	GRGCYC	2 cut(s)	26, 546
Eco31I	GGTCTC	1 cut(s)	482
Eco32I	GATATC	2 cut(s)	52, 325
Eco47I	GGWCC	2 cut(s)	262, 394
Eco53kI	GAGCTC	1 cut(s)	544
Eco88I	CYCGRG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	544
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoRII	CCWGG	4 cut(s)	54, 105, 237, 375
EcoRV	GATATC	2 cut(s)	52, 325
EcoT38I	GRGCYC	2 cut(s)	26, 546
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
FaeI	CATG	1 cut(s)	10
FaiI	YATR	5 cut(s)	8, 13, 603, 713, 842
FaqI	GGGAC	2 cut(s)	125, 762
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	3 cut(s)	474, 518, 680
FriOI	GRGCYC	2 cut(s)	26, 546
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	2 cut(s)	305, 720
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	103
GsuI	CTGGAG	2 cut(s)	221, 678
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	105, 317
HapII	CCGG	2 cut(s)	133, 213
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	2 cut(s)	183, 216
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	8 cut(s)	39, 92, 226, 472, 521, 535, 595, 888
HpaII	CCGG	2 cut(s)	133, 213
HphI	GGTGA	2 cut(s)	365, 391
Hpy166II	GTNNAC	2 cut(s)	343, 520
Hpy188I	TCNGA	5 cut(s)	335, 398, 423, 748, 893
Hpy188III	TCNNGA	2 cut(s)	476, 539
Hpy8I	GTNNAC	2 cut(s)	343, 520
Hpy99I	CGWCG	2 cut(s)	221, 323
HpyAV	CCTTC	4 cut(s)	199, 217, 376, 418
HpyCH4III	ACNGT	6 cut(s)	282, 331, 738, 756, 797, 846
HpyCH4V	TGCA	5 cut(s)	253, 343, 433, 465, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 122, 201, 653
HpyF3I	CTNAG	5 cut(s)	75, 420, 587, 773, 884
Hsp92I	GRCGYC	2 cut(s)	183, 216
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	1 cut(s)	183
KasI	GGCGCC	1 cut(s)	182
Kzo9I	GATC	4 cut(s)	387, 398, 450, 748
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	6 cut(s)	200, 335, 367, 478, 541, 659
LweI	GCATC	1 cut(s)	452
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	2 cut(s)	305, 720
MaeIII	GTNAC	2 cut(s)	550, 670
MalI	GATC	4 cut(s)	389, 400, 452, 750
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	4 cut(s)	387, 398, 450, 748
MboII	GAAGA	9 cut(s)	188, 281, 403, 460, 566, 735, 750, 759, 882
MfeI	CAATTG	2 cut(s)	466, 812
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	3 cut(s)	26, 345, 546
MluCI	AATT	5 cut(s)	32, 466, 562, 804, 812
Mly113I	GGCGCC	1 cut(s)	183
MlyI	GAGTC	2 cut(s)	86, 515
MmeI	TCCRAC	3 cut(s)	269, 313, 483
MnlI	CCTC	8 cut(s)	92, 154, 158, 245, 451, 522, 582, 652
MseI	TTAA	2 cut(s)	483, 627
MspCI	CTTAAG	1 cut(s)	482
MspI	CCGG	2 cut(s)	133, 213
MspR9I	CCNGG	5 cut(s)	56, 107, 134, 239, 377
MunI	CAATTG	2 cut(s)	466, 812
MvaI	CCWGG	4 cut(s)	56, 107, 239, 377
MwoI	GCNNNNNNNGC	4 cut(s)	108, 122, 201, 653
NarI	GGCGCC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	4 cut(s)	387, 398, 450, 748
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	3 cut(s)	184, 264, 316
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	670
PaqCI	CACCTGC	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	579
PfeI	GAWTC	5 cut(s)	39, 226, 472, 535, 595
PfoI	TCCNGGA	3 cut(s)	54, 132, 237
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	2 cut(s)	86, 515
PluTI	GGCGCC	1 cut(s)	186
PpsI	GAGTC	2 cut(s)	86, 515
Psp124BI	GAGCTC	1 cut(s)	546
Psp6I	CCWGG	4 cut(s)	54, 105, 237, 375
PspGI	CCWGG	4 cut(s)	54, 105, 237, 375
PspN4I	GGNNCC	3 cut(s)	184, 264, 316
PspPI	GGNCC	3 cut(s)	262, 315, 394
PstI	CTGCAG	1 cut(s)	649
PstNI	CAGNNNCTG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	1 cut(s)	794
RsaNI	GTAC	1 cut(s)	793
Rsr2I	CGGWCCG	1 cut(s)	394
RsrII	CGGWCCG	1 cut(s)	394
SacI	GAGCTC	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	483, 627
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	4 cut(s)	387, 398, 450, 748
Sau96I	GGNCC	3 cut(s)	262, 315, 394
SchI	GAGTC	2 cut(s)	86, 515
ScrFI	CCNGG	5 cut(s)	56, 107, 134, 239, 377
SduI	GDGCHC	3 cut(s)	26, 345, 546
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	452
SfcI	CTRYAG	1 cut(s)	645
SfoI	GGCGCC	1 cut(s)	184
SinI	GGWCC	2 cut(s)	262, 394
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	5 cut(s)	32, 466, 562, 804, 812
SsiI	CCGC	3 cut(s)	102, 144, 193
SspDI	GGCGCC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	305, 720
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	5 cut(s)	54, 105, 132, 237, 375
TaaI	ACNGT	6 cut(s)	282, 331, 738, 756, 797, 846
TaqI	TCGA	4 cut(s)	20, 48, 84, 90
TaqII	GACCGA	1 cut(s)	382
TasI	AATT	5 cut(s)	32, 466, 562, 804, 812
TatI	WGTACW	1 cut(s)	792
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	5 cut(s)	39, 226, 472, 535, 595
Tru1I	TTAA	2 cut(s)	483, 627
Tru9I	TTAA	2 cut(s)	483, 627
TscAI	CASTG	4 cut(s)	334, 345, 741, 888
TseFI	GTSAC	1 cut(s)	670
Tsp45I	GTSAC	1 cut(s)	670
TspRI	CASTG	4 cut(s)	334, 345, 741, 888
Vha464I	CTTAAG	1 cut(s)	482
VneI	GTGCAC	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	262, 394
XagI	CCTNNNNNAGG	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XspI	CTAG	2 cut(s)	305, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.