Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010556

Physical Location & Seq

Genomic Coordinates Reverse (-)

8028903 .. 8031117

Gene Structure 2215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000923

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTGGAGCTTCACCTGGTGAAGGAGATCTCGGTCCGATCAAACTCCTTCTTCGAGGCTCAGAGCCAGTTGCAGGATTTGAATGTGAAGATCGTTGAGGGATGCAATTGGATTCGGGAGCTTAAGGAGACCATTTTGCTGTTGGATGTGGATTTGGTGGACTCTGCGAGGCAGATTCGGGAGCTCAATGTTACCAGGAGTAATTTGTTGGCTCTTCAACAGAAGCTGAGGCTGATTCTCTATGTCAATCAAGCTCTTTCGGTTCTCAAACTGCTTGTTGCCTCTGCAGATTGTGCTGGAGCTTTGGATGTCACAGACGACCTACAACATTTGCTGATACTAGAAGATTATTCTCACTGTGTTTCTGATCCACTGTCTTCCCTTAGTCCCAAAATCTTTTTGTACAGTCTTTCAATTACTCAATTGAGTTTTCTCTGTTTATCTAATGCCATACTGTTTGTGTTGAATAGAGATACCAGAAGATTATTCTCACTTGAGTTTCTGATCCACCTCTCAGGATATTGCCCCAAGTGGGATTGTAGCTTCCAGTATGGTAGCTTAGTTGATTTGGTAGATGGACATACATCAGTACTTTATCGTAGGCTTCGGCTACTGGTTCCCAATGTATACATGAAGATTTGGTCTAAGCTTCAAAAAGTACGTACATCTGGTAAATCCTCATTGAAGGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

232

Amino Acids

26.34

Weight (kDa)

8.19

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15181 FvH4_4g15480 FvH4_5g17630
rosa_chinensis	RchiOBHm_Chr2g0113461
rosa_laevigata	RLG00000000521 RLG00000000923 RLG00000000924 RLG00000020750
rosa_multiflora	Rmu_co8349827.1_g000001 Rmu_sc0001954.1_g000005 Rmu_sc0007873.1_g000007 Rmu_sc0008698.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301430 Rroxscaffold_4G00329220
rosa_samantha	Rh1BG222200 Rh1DG248900 Rh2CG246400 Rh3BG312200 Rh4AG022700
rosa_wichuraiana	Rw2G029940 Rw4G001600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	627
AclWI	GGATC	2 cut(s)	362, 499
AdeI	CACNNNGTG	1 cut(s)	19
AfaI	GTAC	4 cut(s)	404, 591, 660, 664
AfiI	CCNNNNNNNGG	3 cut(s)	22, 73, 532
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	6 cut(s)	82, 218, 414, 466, 653, 685
AjnI	CCWGG	2 cut(s)	15, 194
AluBI	AGCT	9 cut(s)	10, 121, 184, 226, 254, 302, 543, 558, 649
AluI	AGCT	9 cut(s)	10, 121, 184, 226, 254, 302, 543, 558, 649
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	2 cut(s)	362, 499
AlwNI	CAGNNNCTG	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	5, 31
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	569
BciT130I	CCWGG	2 cut(s)	17, 196
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	285
BfrI	CTTAAG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	27
BmcAI	AGTACT	1 cut(s)	591
Bme1390I	CCNGG	2 cut(s)	17, 196
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	618
BmrFI	CCNGG	2 cut(s)	17, 196
BmsI	GCATC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	515
BsaAI	YACGTR	1 cut(s)	662
BsaI	GGTCTC	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 73, 532
Bse1I	ACTGG	3 cut(s)	67, 547, 618
BseBI	CCWGG	2 cut(s)	17, 196
BseGI	GGATG	3 cut(s)	107, 151, 313
BseLI	CCNNNNNNNGG	3 cut(s)	22, 73, 532
BseMII	CTCAG	3 cut(s)	74, 218, 528
BseNI	ACTGG	3 cut(s)	67, 547, 618
BsiHKAI	GWGCWC	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	3 cut(s)	22, 73, 532
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	372
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp1407I	TGTACA	1 cut(s)	402
Bsp143I	GATC	5 cut(s)	27, 38, 90, 367, 504
BspCNI	CTCAG	3 cut(s)	73, 219, 527
BspLI	GGNNCC	1 cut(s)	618
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	2 cut(s)	362, 499
BspQI	GCTCTTC	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	402
BsrI	ACTGG	3 cut(s)	67, 547, 618
BssMI	GATC	5 cut(s)	27, 38, 90, 367, 504
BssNAI	GTATAC	1 cut(s)	628
Bst1107I	GTATAC	1 cut(s)	628
Bst2UI	CCWGG	2 cut(s)	17, 196
Bst4CI	ACNGT	4 cut(s)	359, 375, 407, 456
Bst6I	CTCTTC	1 cut(s)	219
BstAFI	CTTAAG	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	402
BstBAI	YACGTR	1 cut(s)	662
BstDEI	CTNAG	6 cut(s)	60, 227, 383, 514, 559, 645
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	3 cut(s)	107, 151, 313
BstKTI	GATC	5 cut(s)	30, 41, 93, 370, 507
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	5 cut(s)	27, 38, 90, 367, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	2 cut(s)	17, 196
BstSCI	CCNGG	2 cut(s)	15, 194
BstSFI	CTRYAG	1 cut(s)	285
BstSNI	TACGTA	1 cut(s)	662
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BstZ17I	GTATAC	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	107, 151, 313
BtsIMutI	CAGTG	2 cut(s)	355, 371
CaiI	CAGNNNCTG	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	34
CpoI	CGGWCCG	1 cut(s)	34
CsiI	ACCWGGT	1 cut(s)	15
Csp6I	GTAC	4 cut(s)	403, 590, 659, 663
CspI	CGGWCCG	1 cut(s)	34
CviAII	CATG	1 cut(s)	631
CviQI	GTAC	4 cut(s)	403, 590, 659, 663
DdeI	CTNAG	6 cut(s)	60, 227, 383, 514, 559, 645
DpnI	GATC	5 cut(s)	29, 40, 92, 369, 506
DpnII	GATC	5 cut(s)	27, 38, 90, 367, 504
DraIII	CACNNNGTG	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	184
Eco105I	TACGTA	1 cut(s)	662
Eco24I	GRGCYC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	15, 194
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	1 cut(s)	634
FaiI	YATR	6 cut(s)	243, 452, 552, 582, 628, 632
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	630
FblI	GTMKAC	1 cut(s)	627
FokI	GGATG	3 cut(s)	114, 158, 320
FriOI	GRGCYC	1 cut(s)	186
FspBI	CTAG	1 cut(s)	341
GsuI	CTGGAG	1 cut(s)	318
Hin1II	CATG	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	4 cut(s)	112, 161, 175, 235
HphI	GGTGA	2 cut(s)	5, 31
Hpy166II	GTNNAC	2 cut(s)	160, 628
Hpy188I	TCNGA	4 cut(s)	38, 63, 367, 504
Hpy188III	TCNNGA	3 cut(s)	116, 179, 516
Hpy8I	GTNNAC	2 cut(s)	160, 628
HpyAV	CCTTC	3 cut(s)	16, 58, 679
HpyCH4III	ACNGT	4 cut(s)	359, 375, 407, 456
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	3 cut(s)	73, 105, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	6 cut(s)	60, 227, 383, 514, 559, 645
HpySE526I	ACGT	1 cut(s)	661
Hsp92II	CATG	1 cut(s)	634
Kzo9I	GATC	5 cut(s)	27, 38, 90, 367, 504
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	4 cut(s)	7, 118, 181, 299
LweI	GCATC	1 cut(s)	92
MabI	ACCWGGT	1 cut(s)	15
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	2 cut(s)	190, 310
MalI	GATC	5 cut(s)	29, 40, 92, 369, 506
MboI	GATC	5 cut(s)	27, 38, 90, 367, 504
MboII	GAAGA	7 cut(s)	43, 100, 206, 356, 369, 492, 646
MfeI	CAATTG	2 cut(s)	106, 422
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	4 cut(s)	106, 202, 414, 422
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	7 cut(s)	49, 91, 162, 222, 292, 521, 688
MseI	TTAA	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	17, 196
MunI	CAATTG	2 cut(s)	106, 422
MvaI	CCWGG	2 cut(s)	17, 196
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	5 cut(s)	27, 38, 90, 367, 504
NlaIII	CATG	1 cut(s)	634
NlaIV	GGNNCC	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	112, 175, 235
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	662
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	15, 194
PspGI	CCWGG	2 cut(s)	15, 194
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	4 cut(s)	404, 591, 660, 664
RsaNI	GTAC	4 cut(s)	403, 590, 659, 663
Rsr2I	CGGWCCG	1 cut(s)	34
RsrII	CGGWCCG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	5 cut(s)	27, 38, 90, 367, 504
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	591
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	17, 196
SduI	GDGCHC	1 cut(s)	186
SexAI	ACCWGGT	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	122, 494
SmoI	CTYRAG	2 cut(s)	122, 494
SnaBI	TACGTA	1 cut(s)	662
Sse9I	AATT	4 cut(s)	106, 202, 414, 422
SspMI	CTAG	1 cut(s)	341
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	15, 194
TaaI	ACNGT	4 cut(s)	359, 375, 407, 456
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	1 cut(s)	54
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	4 cut(s)	106, 202, 414, 422
TatI	WGTACW	2 cut(s)	402, 589
TfiI	GAWTC	3 cut(s)	112, 175, 235
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	362, 378
TseFI	GTSAC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	647
TspRI	CASTG	2 cut(s)	362, 378
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	1 cut(s)	341
ZrmI	AGTACT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.